zr1394_6_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.1 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 12340582 lines in total Total number of methylation call strings processed: 12340582 Final Cytosine Methylation Report ================================= Total number of C's analysed: 71229852 Total methylated C's in CpG context: 6643663 Total methylated C's in CHG context: 308396 Total methylated C's in CHH context: 4254229 Total C to T conversions in CpG context: 1870268 Total C to T conversions in CHG context: 13553335 Total C to T conversions in CHH context: 44599961 C methylated in CpG context: 78.0% C methylated in CHG context: 2.2% C methylated in CHH context: 8.7%