Bismark Processing Report


Data processed at 15:02 on 2018-08-13


Sequences analysed in total 46455148
Single-end alignments with a unique best hit 16197809
Sequences without alignments under any condition 12629511
Sequences that did not map uniquely 17627828
Genomic sequence context not extractable (edges of chromosomes) 28969

Cytosine Methylation

Total C's analysed 94305654
Methylated C's in CpG context 9507171
Methylated C's in CHG context 406569
Methylated C's in CHH context 5152555
Methylated C's in Unknown context 2031
Unmethylated C's in CpG context 2409490
Unmethylated C's in CHG context 18493047
Unmethylated C's in CHH context 58336822
Unmethylated C's in Unknown context 16126
Percentage methylation (CpG context) 79.8%
Percentage methylation (CHG context) 2.2%
Percentage methylation (CHH context) 8.1%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 3590424 original top strand
CTOT 4517598 complementary to original top strand
CTOB 4486372 complementary to original bottom strand
OB 3574446 original bottom strand