Bismark Processing Report


Data processed at 15:02 on 2018-08-13


Sequences analysed in total 49730113
Single-end alignments with a unique best hit 16050504
Sequences without alignments under any condition 13690949
Sequences that did not map uniquely 19988660
Genomic sequence context not extractable (edges of chromosomes) 32535

Cytosine Methylation

Total C's analysed 97950003
Methylated C's in CpG context 13411305
Methylated C's in CHG context 439668
Methylated C's in CHH context 4998131
Methylated C's in Unknown context 2679
Unmethylated C's in CpG context 2579761
Unmethylated C's in CHG context 19668551
Unmethylated C's in CHH context 56852587
Unmethylated C's in Unknown context 18411
Percentage methylation (CpG context) 83.9%
Percentage methylation (CHG context) 2.2%
Percentage methylation (CHH context) 8.1%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 3651285 original top strand
CTOT 4389654 complementary to original top strand
CTOB 4346235 complementary to original bottom strand
OB 3630795 original bottom strand