Bismark Processing Report


Data processed at 15:02 on 2018-08-13


Sequences analysed in total 38697189
Single-end alignments with a unique best hit 12575055
Sequences without alignments under any condition 10453397
Sequences that did not map uniquely 15668737
Genomic sequence context not extractable (edges of chromosomes) 25167

Cytosine Methylation

Total C's analysed 76972639
Methylated C's in CpG context 11089716
Methylated C's in CHG context 334631
Methylated C's in CHH context 3887465
Methylated C's in Unknown context 2216
Unmethylated C's in CpG context 1652203
Unmethylated C's in CHG context 15523342
Unmethylated C's in CHH context 44485282
Unmethylated C's in Unknown context 14395
Percentage methylation (CpG context) 87.0%
Percentage methylation (CHG context) 2.1%
Percentage methylation (CHH context) 8.0%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 2775397 original top strand
CTOT 3516452 complementary to original top strand
CTOB 3496207 complementary to original bottom strand
OB 2761832 original bottom strand