#-----Location of Executables Used by MAKER/EVALUATOR makeblastdb=/opt/ncbi-blast-2.6.0+/bin/makeblastdb #location of NCBI+ makeblastdb executable blastn=/opt/ncbi-blast-2.6.0+/bin/blastn #location of NCBI+ blastn executable blastx=/opt/ncbi-blast-2.6.0+/bin/blastx #location of NCBI+ blastx executable tblastx=/opt/ncbi-blast-2.6.0+/bin/tblastx #location of NCBI+ tblastx executable formatdb=/usr/bin/formatdb #location of NCBI formatdb executable blastall=/usr/bin/blastall #location of NCBI blastall executable xdformat= #location of WUBLAST xdformat executable blasta= #location of WUBLAST blasta executable RepeatMasker=/opt/RepeatMasker/RepeatMasker #location of RepeatMasker executable exonerate=/opt/exonerate-2.2.0-x86_64/bin/exonerate #location of exonerate executable #-----Ab-initio Gene Prediction Algorithms snap=/opt/snap/snap #location of snap executable gmhmme3= #location of eukaryotic genemark executable gmhmmp= #location of prokaryotic genemark executable augustus=/opt/augustus-3.2.2/bin/augustus #location of augustus executable fgenesh= #location of fgenesh executable tRNAscan-SE=/opt/tRNAscan-SE-1.3.1/tRNAscan-SE #location of trnascan executable snoscan=/opt/snoscan-0.9.1/snoscan #location of snoscan executable #-----Other Algorithms probuild= #location of probuild executable (required for genemark)