Argument "2.53_01" isn't numeric in numeric ge (>=) at /usr/local/lib/x86_64-linux-gnu/perl/5.22.1/forks.pm line 1570. Unknown option: debug_size_limit STATUS: Parsing control files... STATUS: Processing and indexing input FASTA files... STATUS: Setting up database for any GFF3 input... A data structure will be created for you at: /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore To access files for individual sequences use the datastore index: /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_master_datastore_index.log STATUS: Now running MAKER... examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig183147 Length: 1093 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/F1/67/Contig183147//theVoid.Contig183147/0/Contig183147.0.all.rb -species all -dir /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/F1/67/Contig183147//theVoid.Contig183147/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183147.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/F1/67/Contig183147//theVoid.Contig183147/0/Contig183147.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183147.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/F1/67/Contig183147//theVoid.Contig183147/0/Contig183147.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183147.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/F1/67/Contig183147//theVoid.Contig183147/0/Contig183147.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183147.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/F1/67/Contig183147//theVoid.Contig183147/0/Contig183147.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183147.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/F1/67/Contig183147//theVoid.Contig183147/0/Contig183147.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183147.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/F1/67/Contig183147//theVoid.Contig183147/0/Contig183147.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183147.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/F1/67/Contig183147//theVoid.Contig183147/0/Contig183147.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183147.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/F1/67/Contig183147//theVoid.Contig183147/0/Contig183147.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183147.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/F1/67/Contig183147//theVoid.Contig183147/0/Contig183147.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183147.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/F1/67/Contig183147//theVoid.Contig183147/0/Contig183147.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183147.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/F1/67/Contig183147//theVoid.Contig183147/0/Contig183147.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183147.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/F1/67/Contig183147//theVoid.Contig183147/0/Contig183147.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:1 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183147.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/F1/67/Contig183147//theVoid.Contig183147/0/Contig183147.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:1 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183147.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/F1/67/Contig183147//theVoid.Contig183147/0/Contig183147.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:1 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183147.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/F1/67/Contig183147//theVoid.Contig183147/0/Contig183147.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183147.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/F1/67/Contig183147//theVoid.Contig183147/0/Contig183147.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183147.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/F1/67/Contig183147//theVoid.Contig183147/0/Contig183147.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183147.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/F1/67/Contig183147//theVoid.Contig183147/0/Contig183147.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183147.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/F1/67/Contig183147//theVoid.Contig183147/0/Contig183147.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183147.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/F1/67/Contig183147//theVoid.Contig183147/0/Contig183147.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:1 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig183151 Length: 1176 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/3D/5F/Contig183151//theVoid.Contig183151/0/Contig183151.0.all.rb -species all -dir /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/3D/5F/Contig183151//theVoid.Contig183151/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183151.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/3D/5F/Contig183151//theVoid.Contig183151/0/Contig183151.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183151.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/3D/5F/Contig183151//theVoid.Contig183151/0/Contig183151.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183151.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/3D/5F/Contig183151//theVoid.Contig183151/0/Contig183151.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183151.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/3D/5F/Contig183151//theVoid.Contig183151/0/Contig183151.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183151.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/3D/5F/Contig183151//theVoid.Contig183151/0/Contig183151.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183151.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/3D/5F/Contig183151//theVoid.Contig183151/0/Contig183151.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183151.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/3D/5F/Contig183151//theVoid.Contig183151/0/Contig183151.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183151.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/3D/5F/Contig183151//theVoid.Contig183151/0/Contig183151.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183151.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/3D/5F/Contig183151//theVoid.Contig183151/0/Contig183151.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183151.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/3D/5F/Contig183151//theVoid.Contig183151/0/Contig183151.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183151.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/3D/5F/Contig183151//theVoid.Contig183151/0/Contig183151.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183151.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/3D/5F/Contig183151//theVoid.Contig183151/0/Contig183151.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183151.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/3D/5F/Contig183151//theVoid.Contig183151/0/Contig183151.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183151.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/3D/5F/Contig183151//theVoid.Contig183151/0/Contig183151.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183151.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/3D/5F/Contig183151//theVoid.Contig183151/0/Contig183151.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183151.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/3D/5F/Contig183151//theVoid.Contig183151/0/Contig183151.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183151.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/3D/5F/Contig183151//theVoid.Contig183151/0/Contig183151.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183151.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/3D/5F/Contig183151//theVoid.Contig183151/0/Contig183151.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183151.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/3D/5F/Contig183151//theVoid.Contig183151/0/Contig183151.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183151.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/3D/5F/Contig183151//theVoid.Contig183151/0/Contig183151.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig183154 Length: 1139 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/58/B0/Contig183154//theVoid.Contig183154/0/Contig183154.0.all.rb -species all -dir /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/58/B0/Contig183154//theVoid.Contig183154/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183154.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/58/B0/Contig183154//theVoid.Contig183154/0/Contig183154.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183154.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/58/B0/Contig183154//theVoid.Contig183154/0/Contig183154.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183154.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/58/B0/Contig183154//theVoid.Contig183154/0/Contig183154.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183154.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/58/B0/Contig183154//theVoid.Contig183154/0/Contig183154.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183154.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/58/B0/Contig183154//theVoid.Contig183154/0/Contig183154.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183154.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/58/B0/Contig183154//theVoid.Contig183154/0/Contig183154.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183154.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/58/B0/Contig183154//theVoid.Contig183154/0/Contig183154.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183154.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/58/B0/Contig183154//theVoid.Contig183154/0/Contig183154.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183154.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/58/B0/Contig183154//theVoid.Contig183154/0/Contig183154.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183154.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/58/B0/Contig183154//theVoid.Contig183154/0/Contig183154.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/comp39175_c0_seq5.for.1-539.0.fasta -t /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183154.1-539.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183154.1-539.comp39175_c0_seq5.e.exonerate #-------------------------------# cleaning blastn... cleaning clusters.... total clusters:1 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183154.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/58/B0/Contig183154//theVoid.Contig183154/0/Contig183154.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:3 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183154.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/58/B0/Contig183154//theVoid.Contig183154/0/Contig183154.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183154.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/58/B0/Contig183154//theVoid.Contig183154/0/Contig183154.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183154.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/58/B0/Contig183154//theVoid.Contig183154/0/Contig183154.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183154.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/58/B0/Contig183154//theVoid.Contig183154/0/Contig183154.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183154.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/58/B0/Contig183154//theVoid.Contig183154/0/Contig183154.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183154.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/58/B0/Contig183154//theVoid.Contig183154/0/Contig183154.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:4 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183154.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/58/B0/Contig183154//theVoid.Contig183154/0/Contig183154.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:3 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183154.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/58/B0/Contig183154//theVoid.Contig183154/0/Contig183154.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183154.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/58/B0/Contig183154//theVoid.Contig183154/0/Contig183154.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:1 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/EKC34015%2E1.for.1-624.0.fasta -t /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183154.1-624.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183154.1-624.EKC34015%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/EKC20326%2E1.for.1-594.0.fasta -t /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183154.1-594.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183154.1-594.EKC20326%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/XP_022340399%2E1.for.1-633.0.fasta -t /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183154.1-633.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183154.1-633.XP_022340399%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/XP_022340400%2E1.for.1-633.0.fasta -t /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183154.1-633.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183154.1-633.XP_022340400%2E1.p.exonerate #-------------------------------# cleaning blastx... cleaning clusters.... total clusters:1 now processing 0 cleaning clusters.... total clusters:1 now processing 0 flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig183160 Length: 2186 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/12/14/Contig183160//theVoid.Contig183160/0/Contig183160.0.all.rb -species all -dir /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/12/14/Contig183160//theVoid.Contig183160/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183160.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/12/14/Contig183160//theVoid.Contig183160/0/Contig183160.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183160.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/12/14/Contig183160//theVoid.Contig183160/0/Contig183160.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183160.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/12/14/Contig183160//theVoid.Contig183160/0/Contig183160.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183160.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/12/14/Contig183160//theVoid.Contig183160/0/Contig183160.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183160.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/12/14/Contig183160//theVoid.Contig183160/0/Contig183160.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183160.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/12/14/Contig183160//theVoid.Contig183160/0/Contig183160.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183160.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/12/14/Contig183160//theVoid.Contig183160/0/Contig183160.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183160.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/12/14/Contig183160//theVoid.Contig183160/0/Contig183160.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183160.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/12/14/Contig183160//theVoid.Contig183160/0/Contig183160.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183160.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/12/14/Contig183160//theVoid.Contig183160/0/Contig183160.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183160.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/12/14/Contig183160//theVoid.Contig183160/0/Contig183160.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183160.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/12/14/Contig183160//theVoid.Contig183160/0/Contig183160.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183160.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/12/14/Contig183160//theVoid.Contig183160/0/Contig183160.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183160.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/12/14/Contig183160//theVoid.Contig183160/0/Contig183160.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183160.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/12/14/Contig183160//theVoid.Contig183160/0/Contig183160.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183160.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/12/14/Contig183160//theVoid.Contig183160/0/Contig183160.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183160.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/12/14/Contig183160//theVoid.Contig183160/0/Contig183160.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183160.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/12/14/Contig183160//theVoid.Contig183160/0/Contig183160.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183160.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/12/14/Contig183160//theVoid.Contig183160/0/Contig183160.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183160.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/12/14/Contig183160//theVoid.Contig183160/0/Contig183160.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig183165 Length: 4028 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/40/10/Contig183165//theVoid.Contig183165/0/Contig183165.0.all.rb -species all -dir /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/40/10/Contig183165//theVoid.Contig183165/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183165.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/40/10/Contig183165//theVoid.Contig183165/0/Contig183165.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183165.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/40/10/Contig183165//theVoid.Contig183165/0/Contig183165.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183165.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/40/10/Contig183165//theVoid.Contig183165/0/Contig183165.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183165.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/40/10/Contig183165//theVoid.Contig183165/0/Contig183165.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183165.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/40/10/Contig183165//theVoid.Contig183165/0/Contig183165.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183165.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/40/10/Contig183165//theVoid.Contig183165/0/Contig183165.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183165.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/40/10/Contig183165//theVoid.Contig183165/0/Contig183165.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183165.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/40/10/Contig183165//theVoid.Contig183165/0/Contig183165.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183165.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/40/10/Contig183165//theVoid.Contig183165/0/Contig183165.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183165.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/40/10/Contig183165//theVoid.Contig183165/0/Contig183165.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:3 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183165.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/40/10/Contig183165//theVoid.Contig183165/0/Contig183165.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183165.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/40/10/Contig183165//theVoid.Contig183165/0/Contig183165.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183165.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/40/10/Contig183165//theVoid.Contig183165/0/Contig183165.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183165.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/40/10/Contig183165//theVoid.Contig183165/0/Contig183165.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183165.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/40/10/Contig183165//theVoid.Contig183165/0/Contig183165.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183165.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/40/10/Contig183165//theVoid.Contig183165/0/Contig183165.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183165.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/40/10/Contig183165//theVoid.Contig183165/0/Contig183165.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183165.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/40/10/Contig183165//theVoid.Contig183165/0/Contig183165.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183165.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/40/10/Contig183165//theVoid.Contig183165/0/Contig183165.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183165.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/40/10/Contig183165//theVoid.Contig183165/0/Contig183165.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/XP_022330032%2E1.for.3133-4028.0.fasta -t /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183165.3133-4028.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183165.3133-4028.XP_022330032%2E1.p.exonerate #-------------------------------# cleaning blastx... flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig183169 Length: 3303 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/96/7A/Contig183169//theVoid.Contig183169/0/Contig183169.0.all.rb -species all -dir /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/96/7A/Contig183169//theVoid.Contig183169/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183169.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/96/7A/Contig183169//theVoid.Contig183169/0/Contig183169.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183169.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/96/7A/Contig183169//theVoid.Contig183169/0/Contig183169.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183169.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/96/7A/Contig183169//theVoid.Contig183169/0/Contig183169.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183169.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/96/7A/Contig183169//theVoid.Contig183169/0/Contig183169.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183169.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/96/7A/Contig183169//theVoid.Contig183169/0/Contig183169.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183169.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/96/7A/Contig183169//theVoid.Contig183169/0/Contig183169.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183169.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/96/7A/Contig183169//theVoid.Contig183169/0/Contig183169.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183169.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/96/7A/Contig183169//theVoid.Contig183169/0/Contig183169.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183169.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/96/7A/Contig183169//theVoid.Contig183169/0/Contig183169.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183169.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/96/7A/Contig183169//theVoid.Contig183169/0/Contig183169.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183169.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/96/7A/Contig183169//theVoid.Contig183169/0/Contig183169.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183169.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/96/7A/Contig183169//theVoid.Contig183169/0/Contig183169.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183169.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/96/7A/Contig183169//theVoid.Contig183169/0/Contig183169.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183169.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/96/7A/Contig183169//theVoid.Contig183169/0/Contig183169.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183169.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/96/7A/Contig183169//theVoid.Contig183169/0/Contig183169.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183169.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/96/7A/Contig183169//theVoid.Contig183169/0/Contig183169.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183169.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/96/7A/Contig183169//theVoid.Contig183169/0/Contig183169.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183169.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/96/7A/Contig183169//theVoid.Contig183169/0/Contig183169.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183169.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/96/7A/Contig183169//theVoid.Contig183169/0/Contig183169.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183169.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/96/7A/Contig183169//theVoid.Contig183169/0/Contig183169.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig183175 Length: 2807 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/07/78/Contig183175//theVoid.Contig183175/0/Contig183175.0.all.rb -species all -dir /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/07/78/Contig183175//theVoid.Contig183175/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183175.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/07/78/Contig183175//theVoid.Contig183175/0/Contig183175.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183175.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/07/78/Contig183175//theVoid.Contig183175/0/Contig183175.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183175.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/07/78/Contig183175//theVoid.Contig183175/0/Contig183175.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183175.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/07/78/Contig183175//theVoid.Contig183175/0/Contig183175.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183175.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/07/78/Contig183175//theVoid.Contig183175/0/Contig183175.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183175.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/07/78/Contig183175//theVoid.Contig183175/0/Contig183175.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183175.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/07/78/Contig183175//theVoid.Contig183175/0/Contig183175.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183175.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/07/78/Contig183175//theVoid.Contig183175/0/Contig183175.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183175.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/07/78/Contig183175//theVoid.Contig183175/0/Contig183175.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183175.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/07/78/Contig183175//theVoid.Contig183175/0/Contig183175.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183175.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/07/78/Contig183175//theVoid.Contig183175/0/Contig183175.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183175.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/07/78/Contig183175//theVoid.Contig183175/0/Contig183175.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183175.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/07/78/Contig183175//theVoid.Contig183175/0/Contig183175.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183175.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/07/78/Contig183175//theVoid.Contig183175/0/Contig183175.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183175.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/07/78/Contig183175//theVoid.Contig183175/0/Contig183175.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183175.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/07/78/Contig183175//theVoid.Contig183175/0/Contig183175.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183175.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/07/78/Contig183175//theVoid.Contig183175/0/Contig183175.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183175.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/07/78/Contig183175//theVoid.Contig183175/0/Contig183175.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183175.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/07/78/Contig183175//theVoid.Contig183175/0/Contig183175.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183175.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/07/78/Contig183175//theVoid.Contig183175/0/Contig183175.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig183176 Length: 1157 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/07/6A/Contig183176//theVoid.Contig183176/0/Contig183176.0.all.rb -species all -dir /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/07/6A/Contig183176//theVoid.Contig183176/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183176.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/07/6A/Contig183176//theVoid.Contig183176/0/Contig183176.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183176.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/07/6A/Contig183176//theVoid.Contig183176/0/Contig183176.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183176.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/07/6A/Contig183176//theVoid.Contig183176/0/Contig183176.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183176.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/07/6A/Contig183176//theVoid.Contig183176/0/Contig183176.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183176.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/07/6A/Contig183176//theVoid.Contig183176/0/Contig183176.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183176.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/07/6A/Contig183176//theVoid.Contig183176/0/Contig183176.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183176.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/07/6A/Contig183176//theVoid.Contig183176/0/Contig183176.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183176.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/07/6A/Contig183176//theVoid.Contig183176/0/Contig183176.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183176.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/07/6A/Contig183176//theVoid.Contig183176/0/Contig183176.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183176.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/07/6A/Contig183176//theVoid.Contig183176/0/Contig183176.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183176.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/07/6A/Contig183176//theVoid.Contig183176/0/Contig183176.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183176.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/07/6A/Contig183176//theVoid.Contig183176/0/Contig183176.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183176.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/07/6A/Contig183176//theVoid.Contig183176/0/Contig183176.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183176.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/07/6A/Contig183176//theVoid.Contig183176/0/Contig183176.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183176.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/07/6A/Contig183176//theVoid.Contig183176/0/Contig183176.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183176.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/07/6A/Contig183176//theVoid.Contig183176/0/Contig183176.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183176.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/07/6A/Contig183176//theVoid.Contig183176/0/Contig183176.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183176.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/07/6A/Contig183176//theVoid.Contig183176/0/Contig183176.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183176.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/07/6A/Contig183176//theVoid.Contig183176/0/Contig183176.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183176.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/07/6A/Contig183176//theVoid.Contig183176/0/Contig183176.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig183178 Length: 1055 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/2D/ED/Contig183178//theVoid.Contig183178/0/Contig183178.0.all.rb -species all -dir /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/2D/ED/Contig183178//theVoid.Contig183178/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183178.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/2D/ED/Contig183178//theVoid.Contig183178/0/Contig183178.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183178.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/2D/ED/Contig183178//theVoid.Contig183178/0/Contig183178.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183178.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/2D/ED/Contig183178//theVoid.Contig183178/0/Contig183178.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183178.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/2D/ED/Contig183178//theVoid.Contig183178/0/Contig183178.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183178.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/2D/ED/Contig183178//theVoid.Contig183178/0/Contig183178.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183178.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/2D/ED/Contig183178//theVoid.Contig183178/0/Contig183178.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183178.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/2D/ED/Contig183178//theVoid.Contig183178/0/Contig183178.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183178.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/2D/ED/Contig183178//theVoid.Contig183178/0/Contig183178.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183178.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/2D/ED/Contig183178//theVoid.Contig183178/0/Contig183178.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183178.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/2D/ED/Contig183178//theVoid.Contig183178/0/Contig183178.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/comp33799_c0_seq1.for.1-712.0.fasta -t /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183178.1-712.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183178.1-712.comp33799_c0_seq1.e.exonerate #-------------------------------# cleaning blastn... cleaning clusters.... total clusters:1 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183178.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/2D/ED/Contig183178//theVoid.Contig183178/0/Contig183178.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183178.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/2D/ED/Contig183178//theVoid.Contig183178/0/Contig183178.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183178.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/2D/ED/Contig183178//theVoid.Contig183178/0/Contig183178.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183178.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/2D/ED/Contig183178//theVoid.Contig183178/0/Contig183178.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183178.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/2D/ED/Contig183178//theVoid.Contig183178/0/Contig183178.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183178.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/2D/ED/Contig183178//theVoid.Contig183178/0/Contig183178.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183178.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/2D/ED/Contig183178//theVoid.Contig183178/0/Contig183178.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183178.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/2D/ED/Contig183178//theVoid.Contig183178/0/Contig183178.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183178.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/2D/ED/Contig183178//theVoid.Contig183178/0/Contig183178.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183178.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/2D/ED/Contig183178//theVoid.Contig183178/0/Contig183178.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig183182 Length: 3429 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/B0/92/Contig183182//theVoid.Contig183182/0/Contig183182.0.all.rb -species all -dir /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/B0/92/Contig183182//theVoid.Contig183182/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183182.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/B0/92/Contig183182//theVoid.Contig183182/0/Contig183182.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183182.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/B0/92/Contig183182//theVoid.Contig183182/0/Contig183182.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183182.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/B0/92/Contig183182//theVoid.Contig183182/0/Contig183182.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183182.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/B0/92/Contig183182//theVoid.Contig183182/0/Contig183182.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183182.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/B0/92/Contig183182//theVoid.Contig183182/0/Contig183182.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183182.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/B0/92/Contig183182//theVoid.Contig183182/0/Contig183182.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183182.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/B0/92/Contig183182//theVoid.Contig183182/0/Contig183182.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183182.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/B0/92/Contig183182//theVoid.Contig183182/0/Contig183182.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183182.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/B0/92/Contig183182//theVoid.Contig183182/0/Contig183182.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183182.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/B0/92/Contig183182//theVoid.Contig183182/0/Contig183182.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/comp41412_c2_seq6.for.2397-3388.0.fasta -t /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183182.2397-3388.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183182.2397-3388.comp41412_c2_seq6.e.exonerate #-------------------------------# cleaning blastn... flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183182.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/B0/92/Contig183182//theVoid.Contig183182/0/Contig183182.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183182.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/B0/92/Contig183182//theVoid.Contig183182/0/Contig183182.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183182.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/B0/92/Contig183182//theVoid.Contig183182/0/Contig183182.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183182.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/B0/92/Contig183182//theVoid.Contig183182/0/Contig183182.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183182.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/B0/92/Contig183182//theVoid.Contig183182/0/Contig183182.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183182.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/B0/92/Contig183182//theVoid.Contig183182/0/Contig183182.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183182.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/B0/92/Contig183182//theVoid.Contig183182/0/Contig183182.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183182.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/B0/92/Contig183182//theVoid.Contig183182/0/Contig183182.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183182.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/B0/92/Contig183182//theVoid.Contig183182/0/Contig183182.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.2/cctools-temp-t.2.k4Bicy/maker_guCq58/0/Contig183182.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.2/Olurida_v081.maker.output/Olurida_v081_datastore/B0/92/Contig183182//theVoid.Contig183182/0/Contig183182.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output Maker is now finished!!! Start_time: 1533652772 End_time: 1533653055 Elapsed: 283 ================================= Argument "2.53_01" isn't numeric in numeric ge (>=) at /usr/local/lib/x86_64-linux-gnu/perl/5.22.1/forks.pm line 1570. Unknown option: debug_size_limit STATUS: Parsing control files... STATUS: Processing and indexing input FASTA files... STATUS: Setting up database for any GFF3 input... A data structure will be created for you at: /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore To access files for individual sequences use the datastore index: /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_master_datastore_index.log STATUS: Now running MAKER... examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig72840 Length: 11502 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/C5/BC/Contig72840//theVoid.Contig72840/0/Contig72840.0.all.rb -species all -dir /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/C5/BC/Contig72840//theVoid.Contig72840/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72840.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/C5/BC/Contig72840//theVoid.Contig72840/0/Contig72840.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72840.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/C5/BC/Contig72840//theVoid.Contig72840/0/Contig72840.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72840.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/C5/BC/Contig72840//theVoid.Contig72840/0/Contig72840.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72840.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/C5/BC/Contig72840//theVoid.Contig72840/0/Contig72840.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72840.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/C5/BC/Contig72840//theVoid.Contig72840/0/Contig72840.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72840.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/C5/BC/Contig72840//theVoid.Contig72840/0/Contig72840.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72840.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/C5/BC/Contig72840//theVoid.Contig72840/0/Contig72840.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72840.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/C5/BC/Contig72840//theVoid.Contig72840/0/Contig72840.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72840.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/C5/BC/Contig72840//theVoid.Contig72840/0/Contig72840.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72840.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/C5/BC/Contig72840//theVoid.Contig72840/0/Contig72840.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:3 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/comp40493_c1_seq7.for.1-678.0.fasta -t /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72840.1-678.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72840.1-678.comp40493_c1_seq7.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/comp33799_c0_seq1.for.1518-2504.0.fasta -t /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72840.1518-2504.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72840.1518-2504.comp33799_c0_seq1.e.exonerate #-------------------------------# cleaning blastn... cleaning clusters.... total clusters:1 now processing 0 flattening EST clusters doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72840.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/C5/BC/Contig72840//theVoid.Contig72840/0/Contig72840.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72840.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/C5/BC/Contig72840//theVoid.Contig72840/0/Contig72840.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72840.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/C5/BC/Contig72840//theVoid.Contig72840/0/Contig72840.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72840.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/C5/BC/Contig72840//theVoid.Contig72840/0/Contig72840.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72840.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/C5/BC/Contig72840//theVoid.Contig72840/0/Contig72840.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72840.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/C5/BC/Contig72840//theVoid.Contig72840/0/Contig72840.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72840.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/C5/BC/Contig72840//theVoid.Contig72840/0/Contig72840.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72840.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/C5/BC/Contig72840//theVoid.Contig72840/0/Contig72840.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72840.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/C5/BC/Contig72840//theVoid.Contig72840/0/Contig72840.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72840.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/C5/BC/Contig72840//theVoid.Contig72840/0/Contig72840.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig72841 Length: 2470 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/CC/92/Contig72841//theVoid.Contig72841/0/Contig72841.0.all.rb -species all -dir /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/CC/92/Contig72841//theVoid.Contig72841/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72841.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/CC/92/Contig72841//theVoid.Contig72841/0/Contig72841.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72841.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/CC/92/Contig72841//theVoid.Contig72841/0/Contig72841.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72841.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/CC/92/Contig72841//theVoid.Contig72841/0/Contig72841.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72841.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/CC/92/Contig72841//theVoid.Contig72841/0/Contig72841.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72841.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/CC/92/Contig72841//theVoid.Contig72841/0/Contig72841.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72841.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/CC/92/Contig72841//theVoid.Contig72841/0/Contig72841.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72841.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/CC/92/Contig72841//theVoid.Contig72841/0/Contig72841.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72841.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/CC/92/Contig72841//theVoid.Contig72841/0/Contig72841.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72841.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/CC/92/Contig72841//theVoid.Contig72841/0/Contig72841.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72841.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/CC/92/Contig72841//theVoid.Contig72841/0/Contig72841.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72841.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/CC/92/Contig72841//theVoid.Contig72841/0/Contig72841.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72841.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/CC/92/Contig72841//theVoid.Contig72841/0/Contig72841.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72841.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/CC/92/Contig72841//theVoid.Contig72841/0/Contig72841.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72841.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/CC/92/Contig72841//theVoid.Contig72841/0/Contig72841.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72841.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/CC/92/Contig72841//theVoid.Contig72841/0/Contig72841.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72841.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/CC/92/Contig72841//theVoid.Contig72841/0/Contig72841.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72841.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/CC/92/Contig72841//theVoid.Contig72841/0/Contig72841.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72841.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/CC/92/Contig72841//theVoid.Contig72841/0/Contig72841.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72841.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/CC/92/Contig72841//theVoid.Contig72841/0/Contig72841.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72841.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/CC/92/Contig72841//theVoid.Contig72841/0/Contig72841.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig72842 Length: 12667 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/BC/51/Contig72842//theVoid.Contig72842/0/Contig72842.0.all.rb -species all -dir /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/BC/51/Contig72842//theVoid.Contig72842/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72842.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/BC/51/Contig72842//theVoid.Contig72842/0/Contig72842.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72842.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/BC/51/Contig72842//theVoid.Contig72842/0/Contig72842.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72842.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/BC/51/Contig72842//theVoid.Contig72842/0/Contig72842.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72842.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/BC/51/Contig72842//theVoid.Contig72842/0/Contig72842.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72842.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/BC/51/Contig72842//theVoid.Contig72842/0/Contig72842.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72842.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/BC/51/Contig72842//theVoid.Contig72842/0/Contig72842.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72842.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/BC/51/Contig72842//theVoid.Contig72842/0/Contig72842.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72842.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/BC/51/Contig72842//theVoid.Contig72842/0/Contig72842.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72842.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/BC/51/Contig72842//theVoid.Contig72842/0/Contig72842.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72842.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/BC/51/Contig72842//theVoid.Contig72842/0/Contig72842.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:4 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/comp33799_c0_seq1.for.58-1098.0.fasta -t /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72842.58-1098.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72842.58-1098.comp33799_c0_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/comp41168_c1_seq5.for.609-1696.0.fasta -t /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72842.609-1696.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72842.609-1696.comp41168_c1_seq5.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/comp41168_c1_seq6.for.671-1696.0.fasta -t /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72842.671-1696.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72842.671-1696.comp41168_c1_seq6.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:2 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:2 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72842.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/BC/51/Contig72842//theVoid.Contig72842/0/Contig72842.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72842.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/BC/51/Contig72842//theVoid.Contig72842/0/Contig72842.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72842.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/BC/51/Contig72842//theVoid.Contig72842/0/Contig72842.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72842.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/BC/51/Contig72842//theVoid.Contig72842/0/Contig72842.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72842.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/BC/51/Contig72842//theVoid.Contig72842/0/Contig72842.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72842.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/BC/51/Contig72842//theVoid.Contig72842/0/Contig72842.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72842.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/BC/51/Contig72842//theVoid.Contig72842/0/Contig72842.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72842.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/BC/51/Contig72842//theVoid.Contig72842/0/Contig72842.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72842.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/BC/51/Contig72842//theVoid.Contig72842/0/Contig72842.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72842.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/BC/51/Contig72842//theVoid.Contig72842/0/Contig72842.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig72843 Length: 2603 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/A5/A2/Contig72843//theVoid.Contig72843/0/Contig72843.0.all.rb -species all -dir /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/A5/A2/Contig72843//theVoid.Contig72843/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72843.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/A5/A2/Contig72843//theVoid.Contig72843/0/Contig72843.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72843.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/A5/A2/Contig72843//theVoid.Contig72843/0/Contig72843.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72843.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/A5/A2/Contig72843//theVoid.Contig72843/0/Contig72843.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72843.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/A5/A2/Contig72843//theVoid.Contig72843/0/Contig72843.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72843.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/A5/A2/Contig72843//theVoid.Contig72843/0/Contig72843.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72843.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/A5/A2/Contig72843//theVoid.Contig72843/0/Contig72843.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72843.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/A5/A2/Contig72843//theVoid.Contig72843/0/Contig72843.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72843.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/A5/A2/Contig72843//theVoid.Contig72843/0/Contig72843.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72843.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/A5/A2/Contig72843//theVoid.Contig72843/0/Contig72843.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72843.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/A5/A2/Contig72843//theVoid.Contig72843/0/Contig72843.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72843.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/A5/A2/Contig72843//theVoid.Contig72843/0/Contig72843.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72843.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/A5/A2/Contig72843//theVoid.Contig72843/0/Contig72843.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72843.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/A5/A2/Contig72843//theVoid.Contig72843/0/Contig72843.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72843.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/A5/A2/Contig72843//theVoid.Contig72843/0/Contig72843.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72843.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/A5/A2/Contig72843//theVoid.Contig72843/0/Contig72843.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72843.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/A5/A2/Contig72843//theVoid.Contig72843/0/Contig72843.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72843.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/A5/A2/Contig72843//theVoid.Contig72843/0/Contig72843.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72843.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/A5/A2/Contig72843//theVoid.Contig72843/0/Contig72843.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72843.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/A5/A2/Contig72843//theVoid.Contig72843/0/Contig72843.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72843.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/A5/A2/Contig72843//theVoid.Contig72843/0/Contig72843.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig72844 Length: 6413 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/DD/0A/Contig72844//theVoid.Contig72844/0/Contig72844.0.all.rb -species all -dir /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/DD/0A/Contig72844//theVoid.Contig72844/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72844.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/DD/0A/Contig72844//theVoid.Contig72844/0/Contig72844.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72844.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/DD/0A/Contig72844//theVoid.Contig72844/0/Contig72844.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72844.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/DD/0A/Contig72844//theVoid.Contig72844/0/Contig72844.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72844.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/DD/0A/Contig72844//theVoid.Contig72844/0/Contig72844.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72844.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/DD/0A/Contig72844//theVoid.Contig72844/0/Contig72844.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72844.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/DD/0A/Contig72844//theVoid.Contig72844/0/Contig72844.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72844.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/DD/0A/Contig72844//theVoid.Contig72844/0/Contig72844.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72844.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/DD/0A/Contig72844//theVoid.Contig72844/0/Contig72844.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72844.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/DD/0A/Contig72844//theVoid.Contig72844/0/Contig72844.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72844.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/DD/0A/Contig72844//theVoid.Contig72844/0/Contig72844.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72844.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/DD/0A/Contig72844//theVoid.Contig72844/0/Contig72844.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72844.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/DD/0A/Contig72844//theVoid.Contig72844/0/Contig72844.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72844.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/DD/0A/Contig72844//theVoid.Contig72844/0/Contig72844.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72844.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/DD/0A/Contig72844//theVoid.Contig72844/0/Contig72844.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72844.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/DD/0A/Contig72844//theVoid.Contig72844/0/Contig72844.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72844.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/DD/0A/Contig72844//theVoid.Contig72844/0/Contig72844.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72844.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/DD/0A/Contig72844//theVoid.Contig72844/0/Contig72844.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72844.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/DD/0A/Contig72844//theVoid.Contig72844/0/Contig72844.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72844.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/DD/0A/Contig72844//theVoid.Contig72844/0/Contig72844.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72844.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/DD/0A/Contig72844//theVoid.Contig72844/0/Contig72844.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig72845 Length: 2250 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/45/1A/Contig72845//theVoid.Contig72845/0/Contig72845.0.all.rb -species all -dir /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/45/1A/Contig72845//theVoid.Contig72845/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72845.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/45/1A/Contig72845//theVoid.Contig72845/0/Contig72845.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72845.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/45/1A/Contig72845//theVoid.Contig72845/0/Contig72845.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72845.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/45/1A/Contig72845//theVoid.Contig72845/0/Contig72845.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72845.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/45/1A/Contig72845//theVoid.Contig72845/0/Contig72845.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72845.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/45/1A/Contig72845//theVoid.Contig72845/0/Contig72845.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72845.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/45/1A/Contig72845//theVoid.Contig72845/0/Contig72845.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72845.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/45/1A/Contig72845//theVoid.Contig72845/0/Contig72845.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72845.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/45/1A/Contig72845//theVoid.Contig72845/0/Contig72845.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72845.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/45/1A/Contig72845//theVoid.Contig72845/0/Contig72845.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72845.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/45/1A/Contig72845//theVoid.Contig72845/0/Contig72845.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72845.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/45/1A/Contig72845//theVoid.Contig72845/0/Contig72845.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72845.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/45/1A/Contig72845//theVoid.Contig72845/0/Contig72845.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72845.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/45/1A/Contig72845//theVoid.Contig72845/0/Contig72845.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72845.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/45/1A/Contig72845//theVoid.Contig72845/0/Contig72845.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72845.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/45/1A/Contig72845//theVoid.Contig72845/0/Contig72845.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72845.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/45/1A/Contig72845//theVoid.Contig72845/0/Contig72845.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72845.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/45/1A/Contig72845//theVoid.Contig72845/0/Contig72845.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72845.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/45/1A/Contig72845//theVoid.Contig72845/0/Contig72845.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72845.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/45/1A/Contig72845//theVoid.Contig72845/0/Contig72845.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72845.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/45/1A/Contig72845//theVoid.Contig72845/0/Contig72845.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig72846 Length: 2023 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/54/6D/Contig72846//theVoid.Contig72846/0/Contig72846.0.all.rb -species all -dir /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/54/6D/Contig72846//theVoid.Contig72846/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72846.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/54/6D/Contig72846//theVoid.Contig72846/0/Contig72846.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72846.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/54/6D/Contig72846//theVoid.Contig72846/0/Contig72846.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72846.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/54/6D/Contig72846//theVoid.Contig72846/0/Contig72846.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72846.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/54/6D/Contig72846//theVoid.Contig72846/0/Contig72846.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72846.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/54/6D/Contig72846//theVoid.Contig72846/0/Contig72846.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72846.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/54/6D/Contig72846//theVoid.Contig72846/0/Contig72846.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72846.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/54/6D/Contig72846//theVoid.Contig72846/0/Contig72846.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72846.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/54/6D/Contig72846//theVoid.Contig72846/0/Contig72846.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72846.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/54/6D/Contig72846//theVoid.Contig72846/0/Contig72846.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72846.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/54/6D/Contig72846//theVoid.Contig72846/0/Contig72846.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72846.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/54/6D/Contig72846//theVoid.Contig72846/0/Contig72846.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72846.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/54/6D/Contig72846//theVoid.Contig72846/0/Contig72846.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72846.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/54/6D/Contig72846//theVoid.Contig72846/0/Contig72846.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72846.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/54/6D/Contig72846//theVoid.Contig72846/0/Contig72846.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72846.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/54/6D/Contig72846//theVoid.Contig72846/0/Contig72846.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72846.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/54/6D/Contig72846//theVoid.Contig72846/0/Contig72846.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72846.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/54/6D/Contig72846//theVoid.Contig72846/0/Contig72846.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72846.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/54/6D/Contig72846//theVoid.Contig72846/0/Contig72846.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72846.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/54/6D/Contig72846//theVoid.Contig72846/0/Contig72846.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72846.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/54/6D/Contig72846//theVoid.Contig72846/0/Contig72846.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig72847 Length: 6101 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/AF/21/Contig72847//theVoid.Contig72847/0/Contig72847.0.all.rb -species all -dir /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/AF/21/Contig72847//theVoid.Contig72847/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72847.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/AF/21/Contig72847//theVoid.Contig72847/0/Contig72847.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72847.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/AF/21/Contig72847//theVoid.Contig72847/0/Contig72847.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72847.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/AF/21/Contig72847//theVoid.Contig72847/0/Contig72847.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72847.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/AF/21/Contig72847//theVoid.Contig72847/0/Contig72847.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72847.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/AF/21/Contig72847//theVoid.Contig72847/0/Contig72847.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72847.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/AF/21/Contig72847//theVoid.Contig72847/0/Contig72847.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72847.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/AF/21/Contig72847//theVoid.Contig72847/0/Contig72847.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72847.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/AF/21/Contig72847//theVoid.Contig72847/0/Contig72847.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72847.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/AF/21/Contig72847//theVoid.Contig72847/0/Contig72847.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72847.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/AF/21/Contig72847//theVoid.Contig72847/0/Contig72847.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72847.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/AF/21/Contig72847//theVoid.Contig72847/0/Contig72847.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72847.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/AF/21/Contig72847//theVoid.Contig72847/0/Contig72847.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72847.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/AF/21/Contig72847//theVoid.Contig72847/0/Contig72847.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72847.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/AF/21/Contig72847//theVoid.Contig72847/0/Contig72847.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72847.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/AF/21/Contig72847//theVoid.Contig72847/0/Contig72847.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72847.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/AF/21/Contig72847//theVoid.Contig72847/0/Contig72847.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72847.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/AF/21/Contig72847//theVoid.Contig72847/0/Contig72847.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72847.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/AF/21/Contig72847//theVoid.Contig72847/0/Contig72847.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72847.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/AF/21/Contig72847//theVoid.Contig72847/0/Contig72847.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72847.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/AF/21/Contig72847//theVoid.Contig72847/0/Contig72847.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig72848 Length: 1892 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/2C/D5/Contig72848//theVoid.Contig72848/0/Contig72848.0.all.rb -species all -dir /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/2C/D5/Contig72848//theVoid.Contig72848/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72848.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/2C/D5/Contig72848//theVoid.Contig72848/0/Contig72848.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72848.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/2C/D5/Contig72848//theVoid.Contig72848/0/Contig72848.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72848.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/2C/D5/Contig72848//theVoid.Contig72848/0/Contig72848.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72848.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/2C/D5/Contig72848//theVoid.Contig72848/0/Contig72848.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72848.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/2C/D5/Contig72848//theVoid.Contig72848/0/Contig72848.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72848.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/2C/D5/Contig72848//theVoid.Contig72848/0/Contig72848.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72848.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/2C/D5/Contig72848//theVoid.Contig72848/0/Contig72848.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72848.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/2C/D5/Contig72848//theVoid.Contig72848/0/Contig72848.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72848.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/2C/D5/Contig72848//theVoid.Contig72848/0/Contig72848.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72848.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/2C/D5/Contig72848//theVoid.Contig72848/0/Contig72848.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72848.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/2C/D5/Contig72848//theVoid.Contig72848/0/Contig72848.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72848.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/2C/D5/Contig72848//theVoid.Contig72848/0/Contig72848.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72848.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/2C/D5/Contig72848//theVoid.Contig72848/0/Contig72848.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72848.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/2C/D5/Contig72848//theVoid.Contig72848/0/Contig72848.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72848.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/2C/D5/Contig72848//theVoid.Contig72848/0/Contig72848.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72848.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/2C/D5/Contig72848//theVoid.Contig72848/0/Contig72848.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72848.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/2C/D5/Contig72848//theVoid.Contig72848/0/Contig72848.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72848.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/2C/D5/Contig72848//theVoid.Contig72848/0/Contig72848.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72848.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/2C/D5/Contig72848//theVoid.Contig72848/0/Contig72848.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72848.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/2C/D5/Contig72848//theVoid.Contig72848/0/Contig72848.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig72849 Length: 2565 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/C5/AB/Contig72849//theVoid.Contig72849/0/Contig72849.0.all.rb -species all -dir /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/C5/AB/Contig72849//theVoid.Contig72849/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72849.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/C5/AB/Contig72849//theVoid.Contig72849/0/Contig72849.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72849.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/C5/AB/Contig72849//theVoid.Contig72849/0/Contig72849.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72849.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/C5/AB/Contig72849//theVoid.Contig72849/0/Contig72849.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72849.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/C5/AB/Contig72849//theVoid.Contig72849/0/Contig72849.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72849.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/C5/AB/Contig72849//theVoid.Contig72849/0/Contig72849.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72849.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/C5/AB/Contig72849//theVoid.Contig72849/0/Contig72849.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72849.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/C5/AB/Contig72849//theVoid.Contig72849/0/Contig72849.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72849.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/C5/AB/Contig72849//theVoid.Contig72849/0/Contig72849.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72849.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/C5/AB/Contig72849//theVoid.Contig72849/0/Contig72849.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72849.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/C5/AB/Contig72849//theVoid.Contig72849/0/Contig72849.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72849.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/C5/AB/Contig72849//theVoid.Contig72849/0/Contig72849.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72849.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/C5/AB/Contig72849//theVoid.Contig72849/0/Contig72849.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72849.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/C5/AB/Contig72849//theVoid.Contig72849/0/Contig72849.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72849.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/C5/AB/Contig72849//theVoid.Contig72849/0/Contig72849.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72849.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/C5/AB/Contig72849//theVoid.Contig72849/0/Contig72849.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72849.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/C5/AB/Contig72849//theVoid.Contig72849/0/Contig72849.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72849.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/C5/AB/Contig72849//theVoid.Contig72849/0/Contig72849.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72849.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/C5/AB/Contig72849//theVoid.Contig72849/0/Contig72849.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72849.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/C5/AB/Contig72849//theVoid.Contig72849/0/Contig72849.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.4/cctools-temp-t.4.eVonNY/maker_32qLHd/0/Contig72849.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.4/Olurida_v081.maker.output/Olurida_v081_datastore/C5/AB/Contig72849//theVoid.Contig72849/0/Contig72849.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output Maker is now finished!!! Start_time: 1533652772 End_time: 1533653084 Elapsed: 312 ================================= Argument "2.53_01" isn't numeric in numeric ge (>=) at /usr/local/lib/x86_64-linux-gnu/perl/5.22.1/forks.pm line 1570. Unknown option: debug_size_limit STATUS: Parsing control files... STATUS: Processing and indexing input FASTA files... STATUS: Setting up database for any GFF3 input... A data structure will be created for you at: /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore To access files for individual sequences use the datastore index: /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_master_datastore_index.log STATUS: Now running MAKER... examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig185733 Length: 8308 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4B/99/Contig185733//theVoid.Contig185733/0/Contig185733.0.all.rb -species all -dir /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4B/99/Contig185733//theVoid.Contig185733/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185733.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4B/99/Contig185733//theVoid.Contig185733/0/Contig185733.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185733.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4B/99/Contig185733//theVoid.Contig185733/0/Contig185733.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185733.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4B/99/Contig185733//theVoid.Contig185733/0/Contig185733.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185733.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4B/99/Contig185733//theVoid.Contig185733/0/Contig185733.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185733.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4B/99/Contig185733//theVoid.Contig185733/0/Contig185733.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185733.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4B/99/Contig185733//theVoid.Contig185733/0/Contig185733.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185733.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4B/99/Contig185733//theVoid.Contig185733/0/Contig185733.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185733.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4B/99/Contig185733//theVoid.Contig185733/0/Contig185733.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185733.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4B/99/Contig185733//theVoid.Contig185733/0/Contig185733.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185733.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4B/99/Contig185733//theVoid.Contig185733/0/Contig185733.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185733.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4B/99/Contig185733//theVoid.Contig185733/0/Contig185733.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:1 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185733.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4B/99/Contig185733//theVoid.Contig185733/0/Contig185733.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:2 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185733.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4B/99/Contig185733//theVoid.Contig185733/0/Contig185733.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:1 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185733.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4B/99/Contig185733//theVoid.Contig185733/0/Contig185733.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185733.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4B/99/Contig185733//theVoid.Contig185733/0/Contig185733.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:1 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185733.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4B/99/Contig185733//theVoid.Contig185733/0/Contig185733.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185733.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4B/99/Contig185733//theVoid.Contig185733/0/Contig185733.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185733.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4B/99/Contig185733//theVoid.Contig185733/0/Contig185733.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185733.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4B/99/Contig185733//theVoid.Contig185733/0/Contig185733.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:1 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185733.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4B/99/Contig185733//theVoid.Contig185733/0/Contig185733.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:1 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig185735 Length: 1124 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/18/6D/Contig185735//theVoid.Contig185735/0/Contig185735.0.all.rb -species all -dir /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/18/6D/Contig185735//theVoid.Contig185735/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185735.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/18/6D/Contig185735//theVoid.Contig185735/0/Contig185735.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185735.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/18/6D/Contig185735//theVoid.Contig185735/0/Contig185735.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185735.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/18/6D/Contig185735//theVoid.Contig185735/0/Contig185735.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185735.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/18/6D/Contig185735//theVoid.Contig185735/0/Contig185735.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185735.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/18/6D/Contig185735//theVoid.Contig185735/0/Contig185735.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185735.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/18/6D/Contig185735//theVoid.Contig185735/0/Contig185735.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185735.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/18/6D/Contig185735//theVoid.Contig185735/0/Contig185735.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185735.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/18/6D/Contig185735//theVoid.Contig185735/0/Contig185735.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185735.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/18/6D/Contig185735//theVoid.Contig185735/0/Contig185735.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185735.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/18/6D/Contig185735//theVoid.Contig185735/0/Contig185735.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185735.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/18/6D/Contig185735//theVoid.Contig185735/0/Contig185735.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185735.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/18/6D/Contig185735//theVoid.Contig185735/0/Contig185735.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185735.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/18/6D/Contig185735//theVoid.Contig185735/0/Contig185735.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185735.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/18/6D/Contig185735//theVoid.Contig185735/0/Contig185735.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185735.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/18/6D/Contig185735//theVoid.Contig185735/0/Contig185735.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185735.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/18/6D/Contig185735//theVoid.Contig185735/0/Contig185735.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185735.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/18/6D/Contig185735//theVoid.Contig185735/0/Contig185735.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185735.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/18/6D/Contig185735//theVoid.Contig185735/0/Contig185735.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185735.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/18/6D/Contig185735//theVoid.Contig185735/0/Contig185735.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185735.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/18/6D/Contig185735//theVoid.Contig185735/0/Contig185735.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig185739 Length: 1031 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/D3/1A/Contig185739//theVoid.Contig185739/0/Contig185739.0.all.rb -species all -dir /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/D3/1A/Contig185739//theVoid.Contig185739/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185739.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/D3/1A/Contig185739//theVoid.Contig185739/0/Contig185739.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185739.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/D3/1A/Contig185739//theVoid.Contig185739/0/Contig185739.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185739.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/D3/1A/Contig185739//theVoid.Contig185739/0/Contig185739.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185739.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/D3/1A/Contig185739//theVoid.Contig185739/0/Contig185739.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185739.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/D3/1A/Contig185739//theVoid.Contig185739/0/Contig185739.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185739.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/D3/1A/Contig185739//theVoid.Contig185739/0/Contig185739.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185739.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/D3/1A/Contig185739//theVoid.Contig185739/0/Contig185739.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185739.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/D3/1A/Contig185739//theVoid.Contig185739/0/Contig185739.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185739.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/D3/1A/Contig185739//theVoid.Contig185739/0/Contig185739.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185739.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/D3/1A/Contig185739//theVoid.Contig185739/0/Contig185739.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185739.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/D3/1A/Contig185739//theVoid.Contig185739/0/Contig185739.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185739.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/D3/1A/Contig185739//theVoid.Contig185739/0/Contig185739.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185739.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/D3/1A/Contig185739//theVoid.Contig185739/0/Contig185739.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185739.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/D3/1A/Contig185739//theVoid.Contig185739/0/Contig185739.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185739.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/D3/1A/Contig185739//theVoid.Contig185739/0/Contig185739.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185739.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/D3/1A/Contig185739//theVoid.Contig185739/0/Contig185739.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185739.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/D3/1A/Contig185739//theVoid.Contig185739/0/Contig185739.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185739.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/D3/1A/Contig185739//theVoid.Contig185739/0/Contig185739.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185739.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/D3/1A/Contig185739//theVoid.Contig185739/0/Contig185739.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185739.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/D3/1A/Contig185739//theVoid.Contig185739/0/Contig185739.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig185741 Length: 10384 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4C/D6/Contig185741//theVoid.Contig185741/0/Contig185741.0.all.rb -species all -dir /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4C/D6/Contig185741//theVoid.Contig185741/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185741.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4C/D6/Contig185741//theVoid.Contig185741/0/Contig185741.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185741.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4C/D6/Contig185741//theVoid.Contig185741/0/Contig185741.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185741.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4C/D6/Contig185741//theVoid.Contig185741/0/Contig185741.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185741.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4C/D6/Contig185741//theVoid.Contig185741/0/Contig185741.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185741.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4C/D6/Contig185741//theVoid.Contig185741/0/Contig185741.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185741.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4C/D6/Contig185741//theVoid.Contig185741/0/Contig185741.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185741.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4C/D6/Contig185741//theVoid.Contig185741/0/Contig185741.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185741.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4C/D6/Contig185741//theVoid.Contig185741/0/Contig185741.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185741.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4C/D6/Contig185741//theVoid.Contig185741/0/Contig185741.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185741.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4C/D6/Contig185741//theVoid.Contig185741/0/Contig185741.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:3 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/comp43422_c2_seq6.for.4556-5978.0.fasta -t /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185741.4556-5978.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185741.4556-5978.comp43422_c2_seq6.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/comp43422_c2_seq9.for.4556-5978.0.fasta -t /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185741.4556-5978.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185741.4556-5978.comp43422_c2_seq9.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/comp42457_c0_seq1.for.5442-6836.0.fasta -t /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185741.5442-6836.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185741.5442-6836.comp42457_c0_seq1.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:1 now processing 0 ...processing 0 of 2 ...processing 1 of 2 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185741.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4C/D6/Contig185741//theVoid.Contig185741/0/Contig185741.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185741.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4C/D6/Contig185741//theVoid.Contig185741/0/Contig185741.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185741.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4C/D6/Contig185741//theVoid.Contig185741/0/Contig185741.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185741.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4C/D6/Contig185741//theVoid.Contig185741/0/Contig185741.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185741.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4C/D6/Contig185741//theVoid.Contig185741/0/Contig185741.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185741.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4C/D6/Contig185741//theVoid.Contig185741/0/Contig185741.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185741.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4C/D6/Contig185741//theVoid.Contig185741/0/Contig185741.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185741.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4C/D6/Contig185741//theVoid.Contig185741/0/Contig185741.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185741.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4C/D6/Contig185741//theVoid.Contig185741/0/Contig185741.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185741.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4C/D6/Contig185741//theVoid.Contig185741/0/Contig185741.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/EKC36839%2E1.for.8700-9643.0.fasta -t /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185741.8700-9643.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185741.8700-9643.EKC36839%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/EKC34328%2E1.for.8697-9592.0.fasta -t /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185741.8697-9592.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185741.8697-9592.EKC34328%2E1.p.exonerate #-------------------------------# cleaning blastx... cleaning clusters.... total clusters:1 now processing 0 cleaning clusters.... total clusters:1 now processing 0 flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig185744 Length: 5474 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/90/1D/Contig185744//theVoid.Contig185744/0/Contig185744.0.all.rb -species all -dir /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/90/1D/Contig185744//theVoid.Contig185744/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185744.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/90/1D/Contig185744//theVoid.Contig185744/0/Contig185744.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185744.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/90/1D/Contig185744//theVoid.Contig185744/0/Contig185744.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185744.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/90/1D/Contig185744//theVoid.Contig185744/0/Contig185744.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185744.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/90/1D/Contig185744//theVoid.Contig185744/0/Contig185744.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185744.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/90/1D/Contig185744//theVoid.Contig185744/0/Contig185744.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185744.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/90/1D/Contig185744//theVoid.Contig185744/0/Contig185744.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185744.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/90/1D/Contig185744//theVoid.Contig185744/0/Contig185744.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185744.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/90/1D/Contig185744//theVoid.Contig185744/0/Contig185744.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185744.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/90/1D/Contig185744//theVoid.Contig185744/0/Contig185744.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185744.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/90/1D/Contig185744//theVoid.Contig185744/0/Contig185744.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:3 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/comp43035_c2_seq16.for.397-1381.0.fasta -t /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185744.397-1381.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185744.397-1381.comp43035_c2_seq16.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/comp36112_c1_seq1.for.2379-3447.0.fasta -t /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185744.2379-3447.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185744.2379-3447.comp36112_c1_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/comp36112_c1_seq2.for.2556-3447.0.fasta -t /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185744.2556-3447.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185744.2556-3447.comp36112_c1_seq2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/comp41949_c0_seq1.for.3100-4267.0.fasta -t /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185744.3100-4267.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185744.3100-4267.comp41949_c0_seq1.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:3 now processing 0 total clusters:3 now processing 0 total clusters:3 now processing 0 ...processing 0 of 2 ...processing 1 of 2 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185744.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/90/1D/Contig185744//theVoid.Contig185744/0/Contig185744.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185744.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/90/1D/Contig185744//theVoid.Contig185744/0/Contig185744.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185744.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/90/1D/Contig185744//theVoid.Contig185744/0/Contig185744.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185744.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/90/1D/Contig185744//theVoid.Contig185744/0/Contig185744.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185744.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/90/1D/Contig185744//theVoid.Contig185744/0/Contig185744.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185744.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/90/1D/Contig185744//theVoid.Contig185744/0/Contig185744.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185744.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/90/1D/Contig185744//theVoid.Contig185744/0/Contig185744.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185744.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/90/1D/Contig185744//theVoid.Contig185744/0/Contig185744.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185744.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/90/1D/Contig185744//theVoid.Contig185744/0/Contig185744.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185744.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/90/1D/Contig185744//theVoid.Contig185744/0/Contig185744.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig185745 Length: 4688 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/85/4A/Contig185745//theVoid.Contig185745/0/Contig185745.0.all.rb -species all -dir /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/85/4A/Contig185745//theVoid.Contig185745/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185745.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/85/4A/Contig185745//theVoid.Contig185745/0/Contig185745.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185745.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/85/4A/Contig185745//theVoid.Contig185745/0/Contig185745.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185745.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/85/4A/Contig185745//theVoid.Contig185745/0/Contig185745.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185745.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/85/4A/Contig185745//theVoid.Contig185745/0/Contig185745.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185745.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/85/4A/Contig185745//theVoid.Contig185745/0/Contig185745.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185745.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/85/4A/Contig185745//theVoid.Contig185745/0/Contig185745.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185745.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/85/4A/Contig185745//theVoid.Contig185745/0/Contig185745.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185745.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/85/4A/Contig185745//theVoid.Contig185745/0/Contig185745.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185745.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/85/4A/Contig185745//theVoid.Contig185745/0/Contig185745.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185745.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/85/4A/Contig185745//theVoid.Contig185745/0/Contig185745.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185745.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/85/4A/Contig185745//theVoid.Contig185745/0/Contig185745.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185745.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/85/4A/Contig185745//theVoid.Contig185745/0/Contig185745.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185745.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/85/4A/Contig185745//theVoid.Contig185745/0/Contig185745.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185745.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/85/4A/Contig185745//theVoid.Contig185745/0/Contig185745.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185745.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/85/4A/Contig185745//theVoid.Contig185745/0/Contig185745.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185745.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/85/4A/Contig185745//theVoid.Contig185745/0/Contig185745.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185745.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/85/4A/Contig185745//theVoid.Contig185745/0/Contig185745.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185745.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/85/4A/Contig185745//theVoid.Contig185745/0/Contig185745.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185745.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/85/4A/Contig185745//theVoid.Contig185745/0/Contig185745.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185745.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/85/4A/Contig185745//theVoid.Contig185745/0/Contig185745.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig185749 Length: 5874 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/76/E4/Contig185749//theVoid.Contig185749/0/Contig185749.0.all.rb -species all -dir /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/76/E4/Contig185749//theVoid.Contig185749/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185749.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/76/E4/Contig185749//theVoid.Contig185749/0/Contig185749.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185749.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/76/E4/Contig185749//theVoid.Contig185749/0/Contig185749.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185749.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/76/E4/Contig185749//theVoid.Contig185749/0/Contig185749.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185749.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/76/E4/Contig185749//theVoid.Contig185749/0/Contig185749.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185749.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/76/E4/Contig185749//theVoid.Contig185749/0/Contig185749.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185749.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/76/E4/Contig185749//theVoid.Contig185749/0/Contig185749.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185749.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/76/E4/Contig185749//theVoid.Contig185749/0/Contig185749.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185749.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/76/E4/Contig185749//theVoid.Contig185749/0/Contig185749.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185749.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/76/E4/Contig185749//theVoid.Contig185749/0/Contig185749.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185749.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/76/E4/Contig185749//theVoid.Contig185749/0/Contig185749.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185749.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/76/E4/Contig185749//theVoid.Contig185749/0/Contig185749.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185749.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/76/E4/Contig185749//theVoid.Contig185749/0/Contig185749.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185749.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/76/E4/Contig185749//theVoid.Contig185749/0/Contig185749.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185749.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/76/E4/Contig185749//theVoid.Contig185749/0/Contig185749.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185749.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/76/E4/Contig185749//theVoid.Contig185749/0/Contig185749.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185749.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/76/E4/Contig185749//theVoid.Contig185749/0/Contig185749.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185749.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/76/E4/Contig185749//theVoid.Contig185749/0/Contig185749.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185749.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/76/E4/Contig185749//theVoid.Contig185749/0/Contig185749.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185749.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/76/E4/Contig185749//theVoid.Contig185749/0/Contig185749.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185749.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/76/E4/Contig185749//theVoid.Contig185749/0/Contig185749.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig185754 Length: 2326 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/BD/52/Contig185754//theVoid.Contig185754/0/Contig185754.0.all.rb -species all -dir /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/BD/52/Contig185754//theVoid.Contig185754/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185754.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/BD/52/Contig185754//theVoid.Contig185754/0/Contig185754.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185754.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/BD/52/Contig185754//theVoid.Contig185754/0/Contig185754.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185754.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/BD/52/Contig185754//theVoid.Contig185754/0/Contig185754.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185754.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/BD/52/Contig185754//theVoid.Contig185754/0/Contig185754.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185754.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/BD/52/Contig185754//theVoid.Contig185754/0/Contig185754.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185754.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/BD/52/Contig185754//theVoid.Contig185754/0/Contig185754.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185754.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/BD/52/Contig185754//theVoid.Contig185754/0/Contig185754.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185754.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/BD/52/Contig185754//theVoid.Contig185754/0/Contig185754.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185754.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/BD/52/Contig185754//theVoid.Contig185754/0/Contig185754.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185754.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/BD/52/Contig185754//theVoid.Contig185754/0/Contig185754.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/comp42912_c1_seq18.for.219-1184.0.fasta -t /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185754.219-1184.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185754.219-1184.comp42912_c1_seq18.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/comp42912_c1_seq8.for.172-1248.0.fasta -t /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185754.172-1248.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185754.172-1248.comp42912_c1_seq8.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/comp42912_c1_seq22.for.219-1184.0.fasta -t /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185754.219-1184.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185754.219-1184.comp42912_c1_seq22.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/comp42912_c1_seq3.for.197-1184.0.fasta -t /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185754.197-1184.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185754.197-1184.comp42912_c1_seq3.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:1 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185754.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/BD/52/Contig185754//theVoid.Contig185754/0/Contig185754.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185754.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/BD/52/Contig185754//theVoid.Contig185754/0/Contig185754.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185754.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/BD/52/Contig185754//theVoid.Contig185754/0/Contig185754.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185754.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/BD/52/Contig185754//theVoid.Contig185754/0/Contig185754.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185754.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/BD/52/Contig185754//theVoid.Contig185754/0/Contig185754.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185754.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/BD/52/Contig185754//theVoid.Contig185754/0/Contig185754.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185754.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/BD/52/Contig185754//theVoid.Contig185754/0/Contig185754.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185754.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/BD/52/Contig185754//theVoid.Contig185754/0/Contig185754.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185754.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/BD/52/Contig185754//theVoid.Contig185754/0/Contig185754.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185754.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/BD/52/Contig185754//theVoid.Contig185754/0/Contig185754.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig185760 Length: 1073 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4B/F0/Contig185760//theVoid.Contig185760/0/Contig185760.0.all.rb -species all -dir /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4B/F0/Contig185760//theVoid.Contig185760/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185760.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4B/F0/Contig185760//theVoid.Contig185760/0/Contig185760.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185760.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4B/F0/Contig185760//theVoid.Contig185760/0/Contig185760.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185760.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4B/F0/Contig185760//theVoid.Contig185760/0/Contig185760.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185760.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4B/F0/Contig185760//theVoid.Contig185760/0/Contig185760.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185760.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4B/F0/Contig185760//theVoid.Contig185760/0/Contig185760.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185760.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4B/F0/Contig185760//theVoid.Contig185760/0/Contig185760.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185760.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4B/F0/Contig185760//theVoid.Contig185760/0/Contig185760.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185760.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4B/F0/Contig185760//theVoid.Contig185760/0/Contig185760.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185760.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4B/F0/Contig185760//theVoid.Contig185760/0/Contig185760.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185760.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4B/F0/Contig185760//theVoid.Contig185760/0/Contig185760.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/comp33799_c0_seq1.for.465-1073.0.fasta -t /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185760.465-1073.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185760.465-1073.comp33799_c0_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/comp39281_c3_seq6.for.460-1073.0.fasta -t /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185760.460-1073.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185760.460-1073.comp39281_c3_seq6.e.exonerate #-------------------------------# cleaning blastn... flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185760.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4B/F0/Contig185760//theVoid.Contig185760/0/Contig185760.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185760.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4B/F0/Contig185760//theVoid.Contig185760/0/Contig185760.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185760.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4B/F0/Contig185760//theVoid.Contig185760/0/Contig185760.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185760.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4B/F0/Contig185760//theVoid.Contig185760/0/Contig185760.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185760.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4B/F0/Contig185760//theVoid.Contig185760/0/Contig185760.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185760.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4B/F0/Contig185760//theVoid.Contig185760/0/Contig185760.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185760.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4B/F0/Contig185760//theVoid.Contig185760/0/Contig185760.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185760.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4B/F0/Contig185760//theVoid.Contig185760/0/Contig185760.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185760.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4B/F0/Contig185760//theVoid.Contig185760/0/Contig185760.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185760.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/4B/F0/Contig185760//theVoid.Contig185760/0/Contig185760.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig185762 Length: 4225 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/0D/C5/Contig185762//theVoid.Contig185762/0/Contig185762.0.all.rb -species all -dir /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/0D/C5/Contig185762//theVoid.Contig185762/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185762.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/0D/C5/Contig185762//theVoid.Contig185762/0/Contig185762.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185762.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/0D/C5/Contig185762//theVoid.Contig185762/0/Contig185762.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185762.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/0D/C5/Contig185762//theVoid.Contig185762/0/Contig185762.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185762.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/0D/C5/Contig185762//theVoid.Contig185762/0/Contig185762.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185762.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/0D/C5/Contig185762//theVoid.Contig185762/0/Contig185762.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185762.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/0D/C5/Contig185762//theVoid.Contig185762/0/Contig185762.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185762.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/0D/C5/Contig185762//theVoid.Contig185762/0/Contig185762.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185762.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/0D/C5/Contig185762//theVoid.Contig185762/0/Contig185762.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185762.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/0D/C5/Contig185762//theVoid.Contig185762/0/Contig185762.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185762.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/0D/C5/Contig185762//theVoid.Contig185762/0/Contig185762.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185762.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/0D/C5/Contig185762//theVoid.Contig185762/0/Contig185762.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185762.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/0D/C5/Contig185762//theVoid.Contig185762/0/Contig185762.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185762.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/0D/C5/Contig185762//theVoid.Contig185762/0/Contig185762.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185762.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/0D/C5/Contig185762//theVoid.Contig185762/0/Contig185762.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185762.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/0D/C5/Contig185762//theVoid.Contig185762/0/Contig185762.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185762.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/0D/C5/Contig185762//theVoid.Contig185762/0/Contig185762.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185762.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/0D/C5/Contig185762//theVoid.Contig185762/0/Contig185762.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185762.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/0D/C5/Contig185762//theVoid.Contig185762/0/Contig185762.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185762.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/0D/C5/Contig185762//theVoid.Contig185762/0/Contig185762.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185762.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/0D/C5/Contig185762//theVoid.Contig185762/0/Contig185762.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:1 hits collecting blastx reports polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/EKC34798%2E1.for.1-844.0.fasta -t /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185762.1-844.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.10/cctools-temp-t.10.q1btUg/maker_mjYWin/0/Contig185762.1-844.EKC34798%2E1.p.exonerate #-------------------------------# cleaning blastx... flattening protein clusters prepare section files processing the chunk divide processing contig output Maker is now finished!!! Start_time: 1533652772 End_time: 1533653093 Elapsed: 321 ================================= Argument "2.53_01" isn't numeric in numeric ge (>=) at /usr/local/lib/x86_64-linux-gnu/perl/5.22.1/forks.pm line 1570. Unknown option: debug_size_limit STATUS: Parsing control files... STATUS: Processing and indexing input FASTA files... STATUS: Setting up database for any GFF3 input... A data structure will be created for you at: /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore To access files for individual sequences use the datastore index: /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_master_datastore_index.log STATUS: Now running MAKER... examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig202635 Length: 17509 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/07/7A/Contig202635//theVoid.Contig202635/0/Contig202635.0.all.rb -species all -dir /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/07/7A/Contig202635//theVoid.Contig202635/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202635.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/07/7A/Contig202635//theVoid.Contig202635/0/Contig202635.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202635.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/07/7A/Contig202635//theVoid.Contig202635/0/Contig202635.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202635.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/07/7A/Contig202635//theVoid.Contig202635/0/Contig202635.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202635.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/07/7A/Contig202635//theVoid.Contig202635/0/Contig202635.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202635.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/07/7A/Contig202635//theVoid.Contig202635/0/Contig202635.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202635.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/07/7A/Contig202635//theVoid.Contig202635/0/Contig202635.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202635.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/07/7A/Contig202635//theVoid.Contig202635/0/Contig202635.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202635.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/07/7A/Contig202635//theVoid.Contig202635/0/Contig202635.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202635.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/07/7A/Contig202635//theVoid.Contig202635/0/Contig202635.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202635.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/07/7A/Contig202635//theVoid.Contig202635/0/Contig202635.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202635.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/07/7A/Contig202635//theVoid.Contig202635/0/Contig202635.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202635.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/07/7A/Contig202635//theVoid.Contig202635/0/Contig202635.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202635.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/07/7A/Contig202635//theVoid.Contig202635/0/Contig202635.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202635.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/07/7A/Contig202635//theVoid.Contig202635/0/Contig202635.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202635.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/07/7A/Contig202635//theVoid.Contig202635/0/Contig202635.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202635.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/07/7A/Contig202635//theVoid.Contig202635/0/Contig202635.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202635.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/07/7A/Contig202635//theVoid.Contig202635/0/Contig202635.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202635.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/07/7A/Contig202635//theVoid.Contig202635/0/Contig202635.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202635.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/07/7A/Contig202635//theVoid.Contig202635/0/Contig202635.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202635.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/07/7A/Contig202635//theVoid.Contig202635/0/Contig202635.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig202636 Length: 2329 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/8C/95/Contig202636//theVoid.Contig202636/0/Contig202636.0.all.rb -species all -dir /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/8C/95/Contig202636//theVoid.Contig202636/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/8C/95/Contig202636//theVoid.Contig202636/0/Contig202636.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/8C/95/Contig202636//theVoid.Contig202636/0/Contig202636.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/8C/95/Contig202636//theVoid.Contig202636/0/Contig202636.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/8C/95/Contig202636//theVoid.Contig202636/0/Contig202636.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/8C/95/Contig202636//theVoid.Contig202636/0/Contig202636.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/8C/95/Contig202636//theVoid.Contig202636/0/Contig202636.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/8C/95/Contig202636//theVoid.Contig202636/0/Contig202636.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/8C/95/Contig202636//theVoid.Contig202636/0/Contig202636.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/8C/95/Contig202636//theVoid.Contig202636/0/Contig202636.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/8C/95/Contig202636//theVoid.Contig202636/0/Contig202636.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/comp42927_c2_seq2.for.415-1496.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.415-1496.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.415-1496.comp42927_c2_seq2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/comp42927_c2_seq13.for.415-1476.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.415-1476.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.415-1476.comp42927_c2_seq13.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/comp42927_c2_seq16.for.415-1496.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.415-1496.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.415-1496.comp42927_c2_seq16.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/comp42927_c2_seq11.for.415-1476.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.415-1476.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.415-1476.comp42927_c2_seq11.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/comp36112_c1_seq1.for.821-2086.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.821-2086.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.821-2086.comp36112_c1_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/comp36112_c1_seq2.for.821-1796.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.821-1796.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.821-1796.comp36112_c1_seq2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/comp36112_c1_seq3.for.984-2086.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.984-2086.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.984-2086.comp36112_c1_seq3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/comp40226_c1_seq3.for.1486-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1486-2329.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1486-2329.comp40226_c1_seq3.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:4 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:4 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:4 now processing 0 total clusters:4 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/8C/95/Contig202636//theVoid.Contig202636/0/Contig202636.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:119 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/8C/95/Contig202636//theVoid.Contig202636/0/Contig202636.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:123 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/8C/95/Contig202636//theVoid.Contig202636/0/Contig202636.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:114 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/8C/95/Contig202636//theVoid.Contig202636/0/Contig202636.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:116 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/8C/95/Contig202636//theVoid.Contig202636/0/Contig202636.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:107 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/8C/95/Contig202636//theVoid.Contig202636/0/Contig202636.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:116 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/8C/95/Contig202636//theVoid.Contig202636/0/Contig202636.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:110 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/8C/95/Contig202636//theVoid.Contig202636/0/Contig202636.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:130 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/8C/95/Contig202636//theVoid.Contig202636/0/Contig202636.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:123 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/8C/95/Contig202636//theVoid.Contig202636/0/Contig202636.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:139 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022312161%2E1.for.1493-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.XP_022312161%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022298491%2E1.for.1493-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.XP_022298491%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022297591%2E1.for.1493-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.XP_022297591%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022296351%2E1.for.1448-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1448-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1448-2329.XP_022296351%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022301921%2E1.for.1493-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.XP_022301921%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022296641%2E1.for.1493-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.XP_022296641%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022316301%2E1.for.1493-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.XP_022316301%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022327181%2E1.for.1493-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.XP_022327181%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/EKC21789%2E1.for.1511-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1511-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1511-2329.EKC21789%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022306312%2E1.for.1493-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.XP_022306312%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022312012%2E1.for.1493-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.XP_022312012%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022310742%2E1.for.1493-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.XP_022310742%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022297592%2E1.for.1493-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.XP_022297592%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022296642%2E1.for.1493-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.XP_022296642%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022303842%2E1.for.1499-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1499-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1499-2329.XP_022303842%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022288522%2E1.for.1511-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1511-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1511-2329.XP_022288522%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/EKC38780%2E1.for.1502-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1502-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1502-2329.EKC38780%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022300872%2E1.for.1517-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1517-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1517-2329.XP_022300872%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022306313%2E1.for.1493-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.XP_022306313%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022312183%2E1.for.1493-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.XP_022312183%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/EKC32941%2E1.for.1493-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.EKC32941%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022310013%2E1.for.1502-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1502-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1502-2329.XP_022310013%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022294663%2E1.for.1502-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1502-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1502-2329.XP_022294663%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022310924%2E1.for.1493-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.XP_022310924%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022312184%2E1.for.1493-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.XP_022312184%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022311294%2E1.for.1493-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.XP_022311294%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022291604%2E1.for.1493-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.XP_022291604%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022298304%2E1.for.1526-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1526-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1526-2329.XP_022298304%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022298044%2E1.for.1502-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1502-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1502-2329.XP_022298044%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/EKC19792%2E1.for.1502-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1502-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1502-2329.EKC19792%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022301084%2E1.for.1493-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.XP_022301084%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022291605%2E1.for.1493-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.XP_022291605%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022292575%2E1.for.1493-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.XP_022292575%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022296375%2E1.for.1505-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1505-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1505-2329.XP_022296375%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/EKC35113%2E1.for.1493-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.EKC35113%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/EKC24363%2E1.for.1496-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1496-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1496-2329.EKC24363%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022308185%2E1.for.1475-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1475-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1475-2329.XP_022308185%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022324105%2E1.for.1493-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.XP_022324105%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022308265%2E1.for.1490-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1490-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1490-2329.XP_022308265%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022296655%2E1.for.1493-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.XP_022296655%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022294916%2E1.for.1493-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.XP_022294916%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022308426%2E1.for.1493-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.XP_022308426%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022308266%2E1.for.1514-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1514-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1514-2329.XP_022308266%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/EKC22724%2E1.for.1499-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1499-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1499-2329.EKC22724%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022312187%2E1.for.1493-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.XP_022312187%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022312777%2E1.for.1493-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.XP_022312777%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022297227%2E1.for.1493-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.XP_022297227%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022293307%2E1.for.1493-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.XP_022293307%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022301717%2E1.for.1493-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.XP_022301717%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022302617%2E1.for.1502-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1502-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1502-2329.XP_022302617%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022297907%2E1.for.1514-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1514-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1514-2329.XP_022297907%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022307827%2E1.for.1493-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.XP_022307827%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022324097%2E1.for.1493-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.XP_022324097%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022314117%2E1.for.1493-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.XP_022314117%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022310218%2E1.for.1493-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.XP_022310218%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022312188%2E1.for.1493-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.XP_022312188%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022291248%2E1.for.1493-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.XP_022291248%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022298518%2E1.for.1493-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.XP_022298518%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022308248%2E1.for.1502-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1502-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1502-2329.XP_022308248%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022296518%2E1.for.1502-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1502-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1502-2329.XP_022296518%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022300258%2E1.for.1493-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.XP_022300258%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022317018%2E1.for.1493-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.XP_022317018%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022317008%2E1.for.1493-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.XP_022317008%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022345218%2E1.for.1517-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1517-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1517-2329.XP_022345218%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022327208%2E1.for.1493-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.XP_022327208%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022312558%2E1.for.1493-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.XP_022312558%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022312159%2E1.for.1493-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.XP_022312159%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022292629%2E1.for.1493-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.XP_022292629%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022303789%2E1.for.1499-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1499-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1499-2329.XP_022303789%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022288739%2E1.for.1502-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1502-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1502-2329.XP_022288739%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022300239%2E1.for.1493-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.XP_022300239%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022312160%2E1.for.1493-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.XP_022312160%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022312010%2E1.for.1493-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.XP_022312010%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022310710%2E1.for.1493-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.XP_022310710%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022307780%2E1.for.1493-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.XP_022307780%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022304280%2E1.for.1493-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.XP_022304280%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022296640%2E1.for.1493-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.XP_022296640%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/XP_022310020%2E1.for.1499-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1499-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1499-2329.XP_022310020%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/EKC22468%2E1.for.1493-2329.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202636.1493-2329.EKC22468%2E1.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:1 now processing 0 ...processing 0 of 12 ...processing 1 of 12 ...processing 2 of 12 ...processing 3 of 12 ...processing 4 of 12 ...processing 5 of 12 ...processing 6 of 12 ...processing 7 of 12 ...processing 8 of 12 ...processing 9 of 12 ...processing 10 of 12 ...processing 11 of 12 in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:1 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig202637 Length: 5022 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/3A/A7/Contig202637//theVoid.Contig202637/0/Contig202637.0.all.rb -species all -dir /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/3A/A7/Contig202637//theVoid.Contig202637/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202637.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/3A/A7/Contig202637//theVoid.Contig202637/0/Contig202637.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202637.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/3A/A7/Contig202637//theVoid.Contig202637/0/Contig202637.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202637.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/3A/A7/Contig202637//theVoid.Contig202637/0/Contig202637.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202637.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/3A/A7/Contig202637//theVoid.Contig202637/0/Contig202637.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202637.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/3A/A7/Contig202637//theVoid.Contig202637/0/Contig202637.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202637.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/3A/A7/Contig202637//theVoid.Contig202637/0/Contig202637.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202637.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/3A/A7/Contig202637//theVoid.Contig202637/0/Contig202637.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202637.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/3A/A7/Contig202637//theVoid.Contig202637/0/Contig202637.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202637.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/3A/A7/Contig202637//theVoid.Contig202637/0/Contig202637.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202637.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/3A/A7/Contig202637//theVoid.Contig202637/0/Contig202637.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202637.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/3A/A7/Contig202637//theVoid.Contig202637/0/Contig202637.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202637.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/3A/A7/Contig202637//theVoid.Contig202637/0/Contig202637.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202637.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/3A/A7/Contig202637//theVoid.Contig202637/0/Contig202637.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202637.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/3A/A7/Contig202637//theVoid.Contig202637/0/Contig202637.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202637.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/3A/A7/Contig202637//theVoid.Contig202637/0/Contig202637.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202637.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/3A/A7/Contig202637//theVoid.Contig202637/0/Contig202637.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202637.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/3A/A7/Contig202637//theVoid.Contig202637/0/Contig202637.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202637.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/3A/A7/Contig202637//theVoid.Contig202637/0/Contig202637.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202637.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/3A/A7/Contig202637//theVoid.Contig202637/0/Contig202637.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202637.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/3A/A7/Contig202637//theVoid.Contig202637/0/Contig202637.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig202640 Length: 1449 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/75/C2/Contig202640//theVoid.Contig202640/0/Contig202640.0.all.rb -species all -dir /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/75/C2/Contig202640//theVoid.Contig202640/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202640.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/75/C2/Contig202640//theVoid.Contig202640/0/Contig202640.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202640.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/75/C2/Contig202640//theVoid.Contig202640/0/Contig202640.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202640.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/75/C2/Contig202640//theVoid.Contig202640/0/Contig202640.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202640.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/75/C2/Contig202640//theVoid.Contig202640/0/Contig202640.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202640.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/75/C2/Contig202640//theVoid.Contig202640/0/Contig202640.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202640.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/75/C2/Contig202640//theVoid.Contig202640/0/Contig202640.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202640.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/75/C2/Contig202640//theVoid.Contig202640/0/Contig202640.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202640.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/75/C2/Contig202640//theVoid.Contig202640/0/Contig202640.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202640.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/75/C2/Contig202640//theVoid.Contig202640/0/Contig202640.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202640.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/75/C2/Contig202640//theVoid.Contig202640/0/Contig202640.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/comp42008_c0_seq7.for.1-897.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202640.1-897.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202640.1-897.comp42008_c0_seq7.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/comp42008_c0_seq2.for.1-931.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202640.1-931.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202640.1-931.comp42008_c0_seq2.e.exonerate #-------------------------------# cleaning blastn... flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202640.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/75/C2/Contig202640//theVoid.Contig202640/0/Contig202640.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202640.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/75/C2/Contig202640//theVoid.Contig202640/0/Contig202640.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202640.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/75/C2/Contig202640//theVoid.Contig202640/0/Contig202640.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202640.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/75/C2/Contig202640//theVoid.Contig202640/0/Contig202640.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202640.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/75/C2/Contig202640//theVoid.Contig202640/0/Contig202640.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202640.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/75/C2/Contig202640//theVoid.Contig202640/0/Contig202640.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202640.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/75/C2/Contig202640//theVoid.Contig202640/0/Contig202640.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202640.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/75/C2/Contig202640//theVoid.Contig202640/0/Contig202640.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202640.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/75/C2/Contig202640//theVoid.Contig202640/0/Contig202640.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202640.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/75/C2/Contig202640//theVoid.Contig202640/0/Contig202640.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig202642 Length: 1927 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/50/CC/Contig202642//theVoid.Contig202642/0/Contig202642.0.all.rb -species all -dir /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/50/CC/Contig202642//theVoid.Contig202642/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202642.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/50/CC/Contig202642//theVoid.Contig202642/0/Contig202642.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202642.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/50/CC/Contig202642//theVoid.Contig202642/0/Contig202642.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202642.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/50/CC/Contig202642//theVoid.Contig202642/0/Contig202642.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202642.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/50/CC/Contig202642//theVoid.Contig202642/0/Contig202642.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202642.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/50/CC/Contig202642//theVoid.Contig202642/0/Contig202642.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202642.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/50/CC/Contig202642//theVoid.Contig202642/0/Contig202642.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202642.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/50/CC/Contig202642//theVoid.Contig202642/0/Contig202642.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202642.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/50/CC/Contig202642//theVoid.Contig202642/0/Contig202642.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202642.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/50/CC/Contig202642//theVoid.Contig202642/0/Contig202642.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202642.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/50/CC/Contig202642//theVoid.Contig202642/0/Contig202642.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/comp40770_c3_seq1.for.1131-1927.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202642.1131-1927.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202642.1131-1927.comp40770_c3_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/comp40770_c3_seq2.for.1131-1927.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202642.1131-1927.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202642.1131-1927.comp40770_c3_seq2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/comp40770_c4_seq3.for.186-1927.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202642.186-1927.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202642.186-1927.comp40770_c4_seq3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/comp40770_c4_seq6.for.186-1927.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202642.186-1927.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202642.186-1927.comp40770_c4_seq6.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/comp40770_c1_seq1.for.1313-1927.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202642.1313-1927.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202642.1313-1927.comp40770_c1_seq1.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:1 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202642.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/50/CC/Contig202642//theVoid.Contig202642/0/Contig202642.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202642.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/50/CC/Contig202642//theVoid.Contig202642/0/Contig202642.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202642.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/50/CC/Contig202642//theVoid.Contig202642/0/Contig202642.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202642.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/50/CC/Contig202642//theVoid.Contig202642/0/Contig202642.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202642.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/50/CC/Contig202642//theVoid.Contig202642/0/Contig202642.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202642.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/50/CC/Contig202642//theVoid.Contig202642/0/Contig202642.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202642.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/50/CC/Contig202642//theVoid.Contig202642/0/Contig202642.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202642.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/50/CC/Contig202642//theVoid.Contig202642/0/Contig202642.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202642.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/50/CC/Contig202642//theVoid.Contig202642/0/Contig202642.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202642.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/50/CC/Contig202642//theVoid.Contig202642/0/Contig202642.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig202645 Length: 1000 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/BA/3E/Contig202645//theVoid.Contig202645/0/Contig202645.0.all.rb -species all -dir /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/BA/3E/Contig202645//theVoid.Contig202645/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202645.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/BA/3E/Contig202645//theVoid.Contig202645/0/Contig202645.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202645.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/BA/3E/Contig202645//theVoid.Contig202645/0/Contig202645.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202645.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/BA/3E/Contig202645//theVoid.Contig202645/0/Contig202645.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202645.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/BA/3E/Contig202645//theVoid.Contig202645/0/Contig202645.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202645.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/BA/3E/Contig202645//theVoid.Contig202645/0/Contig202645.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202645.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/BA/3E/Contig202645//theVoid.Contig202645/0/Contig202645.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202645.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/BA/3E/Contig202645//theVoid.Contig202645/0/Contig202645.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202645.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/BA/3E/Contig202645//theVoid.Contig202645/0/Contig202645.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202645.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/BA/3E/Contig202645//theVoid.Contig202645/0/Contig202645.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202645.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/BA/3E/Contig202645//theVoid.Contig202645/0/Contig202645.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202645.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/BA/3E/Contig202645//theVoid.Contig202645/0/Contig202645.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202645.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/BA/3E/Contig202645//theVoid.Contig202645/0/Contig202645.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202645.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/BA/3E/Contig202645//theVoid.Contig202645/0/Contig202645.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202645.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/BA/3E/Contig202645//theVoid.Contig202645/0/Contig202645.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202645.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/BA/3E/Contig202645//theVoid.Contig202645/0/Contig202645.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202645.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/BA/3E/Contig202645//theVoid.Contig202645/0/Contig202645.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202645.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/BA/3E/Contig202645//theVoid.Contig202645/0/Contig202645.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202645.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/BA/3E/Contig202645//theVoid.Contig202645/0/Contig202645.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202645.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/BA/3E/Contig202645//theVoid.Contig202645/0/Contig202645.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202645.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/BA/3E/Contig202645//theVoid.Contig202645/0/Contig202645.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig202649 Length: 1037 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/44/3A/Contig202649//theVoid.Contig202649/0/Contig202649.0.all.rb -species all -dir /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/44/3A/Contig202649//theVoid.Contig202649/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202649.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/44/3A/Contig202649//theVoid.Contig202649/0/Contig202649.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202649.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/44/3A/Contig202649//theVoid.Contig202649/0/Contig202649.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202649.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/44/3A/Contig202649//theVoid.Contig202649/0/Contig202649.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202649.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/44/3A/Contig202649//theVoid.Contig202649/0/Contig202649.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202649.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/44/3A/Contig202649//theVoid.Contig202649/0/Contig202649.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202649.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/44/3A/Contig202649//theVoid.Contig202649/0/Contig202649.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202649.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/44/3A/Contig202649//theVoid.Contig202649/0/Contig202649.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202649.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/44/3A/Contig202649//theVoid.Contig202649/0/Contig202649.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202649.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/44/3A/Contig202649//theVoid.Contig202649/0/Contig202649.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202649.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/44/3A/Contig202649//theVoid.Contig202649/0/Contig202649.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202649.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/44/3A/Contig202649//theVoid.Contig202649/0/Contig202649.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202649.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/44/3A/Contig202649//theVoid.Contig202649/0/Contig202649.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202649.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/44/3A/Contig202649//theVoid.Contig202649/0/Contig202649.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202649.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/44/3A/Contig202649//theVoid.Contig202649/0/Contig202649.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202649.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/44/3A/Contig202649//theVoid.Contig202649/0/Contig202649.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202649.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/44/3A/Contig202649//theVoid.Contig202649/0/Contig202649.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202649.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/44/3A/Contig202649//theVoid.Contig202649/0/Contig202649.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202649.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/44/3A/Contig202649//theVoid.Contig202649/0/Contig202649.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202649.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/44/3A/Contig202649//theVoid.Contig202649/0/Contig202649.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202649.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/44/3A/Contig202649//theVoid.Contig202649/0/Contig202649.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig202650 Length: 2353 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/7D/4F/Contig202650//theVoid.Contig202650/0/Contig202650.0.all.rb -species all -dir /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/7D/4F/Contig202650//theVoid.Contig202650/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202650.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/7D/4F/Contig202650//theVoid.Contig202650/0/Contig202650.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202650.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/7D/4F/Contig202650//theVoid.Contig202650/0/Contig202650.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202650.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/7D/4F/Contig202650//theVoid.Contig202650/0/Contig202650.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202650.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/7D/4F/Contig202650//theVoid.Contig202650/0/Contig202650.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202650.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/7D/4F/Contig202650//theVoid.Contig202650/0/Contig202650.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202650.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/7D/4F/Contig202650//theVoid.Contig202650/0/Contig202650.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202650.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/7D/4F/Contig202650//theVoid.Contig202650/0/Contig202650.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202650.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/7D/4F/Contig202650//theVoid.Contig202650/0/Contig202650.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202650.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/7D/4F/Contig202650//theVoid.Contig202650/0/Contig202650.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202650.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/7D/4F/Contig202650//theVoid.Contig202650/0/Contig202650.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/comp39038_c1_seq1.for.1-684.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202650.1-684.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202650.1-684.comp39038_c1_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/comp39038_c0_seq1.for.1369-2353.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202650.1369-2353.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202650.1369-2353.comp39038_c0_seq1.e.exonerate #-------------------------------# cleaning blastn... cleaning clusters.... total clusters:1 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202650.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/7D/4F/Contig202650//theVoid.Contig202650/0/Contig202650.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202650.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/7D/4F/Contig202650//theVoid.Contig202650/0/Contig202650.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202650.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/7D/4F/Contig202650//theVoid.Contig202650/0/Contig202650.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202650.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/7D/4F/Contig202650//theVoid.Contig202650/0/Contig202650.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202650.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/7D/4F/Contig202650//theVoid.Contig202650/0/Contig202650.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202650.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/7D/4F/Contig202650//theVoid.Contig202650/0/Contig202650.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202650.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/7D/4F/Contig202650//theVoid.Contig202650/0/Contig202650.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202650.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/7D/4F/Contig202650//theVoid.Contig202650/0/Contig202650.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202650.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/7D/4F/Contig202650//theVoid.Contig202650/0/Contig202650.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202650.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/7D/4F/Contig202650//theVoid.Contig202650/0/Contig202650.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig202655 Length: 2678 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/F1/CE/Contig202655//theVoid.Contig202655/0/Contig202655.0.all.rb -species all -dir /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/F1/CE/Contig202655//theVoid.Contig202655/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202655.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/F1/CE/Contig202655//theVoid.Contig202655/0/Contig202655.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202655.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/F1/CE/Contig202655//theVoid.Contig202655/0/Contig202655.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202655.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/F1/CE/Contig202655//theVoid.Contig202655/0/Contig202655.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202655.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/F1/CE/Contig202655//theVoid.Contig202655/0/Contig202655.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202655.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/F1/CE/Contig202655//theVoid.Contig202655/0/Contig202655.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202655.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/F1/CE/Contig202655//theVoid.Contig202655/0/Contig202655.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202655.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/F1/CE/Contig202655//theVoid.Contig202655/0/Contig202655.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202655.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/F1/CE/Contig202655//theVoid.Contig202655/0/Contig202655.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202655.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/F1/CE/Contig202655//theVoid.Contig202655/0/Contig202655.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202655.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/F1/CE/Contig202655//theVoid.Contig202655/0/Contig202655.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202655.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/F1/CE/Contig202655//theVoid.Contig202655/0/Contig202655.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202655.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/F1/CE/Contig202655//theVoid.Contig202655/0/Contig202655.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202655.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/F1/CE/Contig202655//theVoid.Contig202655/0/Contig202655.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202655.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/F1/CE/Contig202655//theVoid.Contig202655/0/Contig202655.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202655.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/F1/CE/Contig202655//theVoid.Contig202655/0/Contig202655.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202655.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/F1/CE/Contig202655//theVoid.Contig202655/0/Contig202655.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202655.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/F1/CE/Contig202655//theVoid.Contig202655/0/Contig202655.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202655.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/F1/CE/Contig202655//theVoid.Contig202655/0/Contig202655.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202655.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/F1/CE/Contig202655//theVoid.Contig202655/0/Contig202655.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202655.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/F1/CE/Contig202655//theVoid.Contig202655/0/Contig202655.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig202669 Length: 1139 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/4F/BE/Contig202669//theVoid.Contig202669/0/Contig202669.0.all.rb -species all -dir /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/4F/BE/Contig202669//theVoid.Contig202669/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202669.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/4F/BE/Contig202669//theVoid.Contig202669/0/Contig202669.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202669.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/4F/BE/Contig202669//theVoid.Contig202669/0/Contig202669.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202669.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/4F/BE/Contig202669//theVoid.Contig202669/0/Contig202669.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202669.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/4F/BE/Contig202669//theVoid.Contig202669/0/Contig202669.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202669.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/4F/BE/Contig202669//theVoid.Contig202669/0/Contig202669.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202669.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/4F/BE/Contig202669//theVoid.Contig202669/0/Contig202669.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202669.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/4F/BE/Contig202669//theVoid.Contig202669/0/Contig202669.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202669.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/4F/BE/Contig202669//theVoid.Contig202669/0/Contig202669.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202669.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/4F/BE/Contig202669//theVoid.Contig202669/0/Contig202669.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202669.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/4F/BE/Contig202669//theVoid.Contig202669/0/Contig202669.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/comp37553_c2_seq1.for.1-710.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202669.1-710.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202669.1-710.comp37553_c2_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/comp37553_c2_seq2.for.1-710.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202669.1-710.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202669.1-710.comp37553_c2_seq2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/comp37553_c2_seq3.for.1-543.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202669.1-543.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202669.1-543.comp37553_c2_seq3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/comp40459_c0_seq5.for.376-1139.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202669.376-1139.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202669.376-1139.comp40459_c0_seq5.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/comp40459_c0_seq1.for.376-1139.0.fasta -t /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202669.376-1139.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202669.376-1139.comp40459_c0_seq1.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:1 now processing 0 ...processing 0 of 2 ...processing 1 of 2 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202669.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/4F/BE/Contig202669//theVoid.Contig202669/0/Contig202669.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202669.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/4F/BE/Contig202669//theVoid.Contig202669/0/Contig202669.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202669.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/4F/BE/Contig202669//theVoid.Contig202669/0/Contig202669.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202669.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/4F/BE/Contig202669//theVoid.Contig202669/0/Contig202669.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202669.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/4F/BE/Contig202669//theVoid.Contig202669/0/Contig202669.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202669.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/4F/BE/Contig202669//theVoid.Contig202669/0/Contig202669.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202669.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/4F/BE/Contig202669//theVoid.Contig202669/0/Contig202669.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202669.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/4F/BE/Contig202669//theVoid.Contig202669/0/Contig202669.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202669.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/4F/BE/Contig202669//theVoid.Contig202669/0/Contig202669.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.7/cctools-temp-t.7.rLe8K7/maker_t0O32D/0/Contig202669.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.7/Olurida_v081.maker.output/Olurida_v081_datastore/4F/BE/Contig202669//theVoid.Contig202669/0/Contig202669.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output Maker is now finished!!! Start_time: 1533652772 End_time: 1533653101 Elapsed: 329 ================================= Argument "2.53_01" isn't numeric in numeric ge (>=) at /usr/local/lib/x86_64-linux-gnu/perl/5.22.1/forks.pm line 1570. Unknown option: debug_size_limit STATUS: Parsing control files... STATUS: Processing and indexing input FASTA files... STATUS: Setting up database for any GFF3 input... A data structure will be created for you at: /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore To access files for individual sequences use the datastore index: /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_master_datastore_index.log STATUS: Now running MAKER... examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig91309 Length: 1582 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/94/C3/Contig91309//theVoid.Contig91309/0/Contig91309.0.all.rb -species all -dir /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/94/C3/Contig91309//theVoid.Contig91309/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91309.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/94/C3/Contig91309//theVoid.Contig91309/0/Contig91309.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91309.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/94/C3/Contig91309//theVoid.Contig91309/0/Contig91309.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91309.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/94/C3/Contig91309//theVoid.Contig91309/0/Contig91309.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91309.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/94/C3/Contig91309//theVoid.Contig91309/0/Contig91309.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91309.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/94/C3/Contig91309//theVoid.Contig91309/0/Contig91309.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91309.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/94/C3/Contig91309//theVoid.Contig91309/0/Contig91309.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91309.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/94/C3/Contig91309//theVoid.Contig91309/0/Contig91309.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91309.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/94/C3/Contig91309//theVoid.Contig91309/0/Contig91309.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91309.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/94/C3/Contig91309//theVoid.Contig91309/0/Contig91309.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91309.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/94/C3/Contig91309//theVoid.Contig91309/0/Contig91309.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91309.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/94/C3/Contig91309//theVoid.Contig91309/0/Contig91309.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91309.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/94/C3/Contig91309//theVoid.Contig91309/0/Contig91309.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91309.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/94/C3/Contig91309//theVoid.Contig91309/0/Contig91309.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91309.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/94/C3/Contig91309//theVoid.Contig91309/0/Contig91309.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91309.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/94/C3/Contig91309//theVoid.Contig91309/0/Contig91309.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91309.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/94/C3/Contig91309//theVoid.Contig91309/0/Contig91309.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91309.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/94/C3/Contig91309//theVoid.Contig91309/0/Contig91309.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91309.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/94/C3/Contig91309//theVoid.Contig91309/0/Contig91309.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91309.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/94/C3/Contig91309//theVoid.Contig91309/0/Contig91309.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91309.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/94/C3/Contig91309//theVoid.Contig91309/0/Contig91309.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig91310 Length: 2442 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/8F/B3/Contig91310//theVoid.Contig91310/0/Contig91310.0.all.rb -species all -dir /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/8F/B3/Contig91310//theVoid.Contig91310/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91310.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/8F/B3/Contig91310//theVoid.Contig91310/0/Contig91310.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91310.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/8F/B3/Contig91310//theVoid.Contig91310/0/Contig91310.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91310.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/8F/B3/Contig91310//theVoid.Contig91310/0/Contig91310.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91310.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/8F/B3/Contig91310//theVoid.Contig91310/0/Contig91310.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91310.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/8F/B3/Contig91310//theVoid.Contig91310/0/Contig91310.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91310.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/8F/B3/Contig91310//theVoid.Contig91310/0/Contig91310.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91310.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/8F/B3/Contig91310//theVoid.Contig91310/0/Contig91310.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91310.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/8F/B3/Contig91310//theVoid.Contig91310/0/Contig91310.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91310.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/8F/B3/Contig91310//theVoid.Contig91310/0/Contig91310.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91310.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/8F/B3/Contig91310//theVoid.Contig91310/0/Contig91310.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91310.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/8F/B3/Contig91310//theVoid.Contig91310/0/Contig91310.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91310.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/8F/B3/Contig91310//theVoid.Contig91310/0/Contig91310.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91310.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/8F/B3/Contig91310//theVoid.Contig91310/0/Contig91310.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91310.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/8F/B3/Contig91310//theVoid.Contig91310/0/Contig91310.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91310.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/8F/B3/Contig91310//theVoid.Contig91310/0/Contig91310.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91310.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/8F/B3/Contig91310//theVoid.Contig91310/0/Contig91310.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91310.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/8F/B3/Contig91310//theVoid.Contig91310/0/Contig91310.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91310.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/8F/B3/Contig91310//theVoid.Contig91310/0/Contig91310.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91310.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/8F/B3/Contig91310//theVoid.Contig91310/0/Contig91310.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91310.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/8F/B3/Contig91310//theVoid.Contig91310/0/Contig91310.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig91311 Length: 7861 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/09/97/Contig91311//theVoid.Contig91311/0/Contig91311.0.all.rb -species all -dir /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/09/97/Contig91311//theVoid.Contig91311/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91311.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/09/97/Contig91311//theVoid.Contig91311/0/Contig91311.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91311.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/09/97/Contig91311//theVoid.Contig91311/0/Contig91311.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91311.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/09/97/Contig91311//theVoid.Contig91311/0/Contig91311.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91311.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/09/97/Contig91311//theVoid.Contig91311/0/Contig91311.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91311.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/09/97/Contig91311//theVoid.Contig91311/0/Contig91311.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91311.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/09/97/Contig91311//theVoid.Contig91311/0/Contig91311.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91311.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/09/97/Contig91311//theVoid.Contig91311/0/Contig91311.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91311.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/09/97/Contig91311//theVoid.Contig91311/0/Contig91311.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91311.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/09/97/Contig91311//theVoid.Contig91311/0/Contig91311.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91311.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/09/97/Contig91311//theVoid.Contig91311/0/Contig91311.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/comp42457_c0_seq1.for.1-5913.0.fasta -t /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91311.1-5913.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91311.1-5913.comp42457_c0_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/comp34241_c0_seq1.for.6631-7852.0.fasta -t /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91311.6631-7852.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91311.6631-7852.comp34241_c0_seq1.e.exonerate #-------------------------------# cleaning blastn... cleaning clusters.... total clusters:1 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91311.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/09/97/Contig91311//theVoid.Contig91311/0/Contig91311.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91311.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/09/97/Contig91311//theVoid.Contig91311/0/Contig91311.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91311.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/09/97/Contig91311//theVoid.Contig91311/0/Contig91311.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91311.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/09/97/Contig91311//theVoid.Contig91311/0/Contig91311.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91311.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/09/97/Contig91311//theVoid.Contig91311/0/Contig91311.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91311.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/09/97/Contig91311//theVoid.Contig91311/0/Contig91311.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91311.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/09/97/Contig91311//theVoid.Contig91311/0/Contig91311.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91311.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/09/97/Contig91311//theVoid.Contig91311/0/Contig91311.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91311.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/09/97/Contig91311//theVoid.Contig91311/0/Contig91311.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91311.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/09/97/Contig91311//theVoid.Contig91311/0/Contig91311.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig91312 Length: 12426 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/33/B3/Contig91312//theVoid.Contig91312/0/Contig91312.0.all.rb -species all -dir /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/33/B3/Contig91312//theVoid.Contig91312/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91312.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/33/B3/Contig91312//theVoid.Contig91312/0/Contig91312.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:11 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91312.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/33/B3/Contig91312//theVoid.Contig91312/0/Contig91312.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:8 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91312.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/33/B3/Contig91312//theVoid.Contig91312/0/Contig91312.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:8 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91312.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/33/B3/Contig91312//theVoid.Contig91312/0/Contig91312.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91312.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/33/B3/Contig91312//theVoid.Contig91312/0/Contig91312.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91312.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/33/B3/Contig91312//theVoid.Contig91312/0/Contig91312.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91312.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/33/B3/Contig91312//theVoid.Contig91312/0/Contig91312.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:9 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91312.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/33/B3/Contig91312//theVoid.Contig91312/0/Contig91312.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:7 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91312.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/33/B3/Contig91312//theVoid.Contig91312/0/Contig91312.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91312.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/33/B3/Contig91312//theVoid.Contig91312/0/Contig91312.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:6 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/comp38913_c17_seq1.for.4339-5400.0.fasta -t /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91312.4339-5400.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91312.4339-5400.comp38913_c17_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/comp42663_c4_seq8.for.7442-8690.0.fasta -t /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91312.7442-8690.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91312.7442-8690.comp42663_c4_seq8.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/comp42663_c4_seq2.for.6936-8690.0.fasta -t /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91312.6936-8690.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91312.6936-8690.comp42663_c4_seq2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/comp42663_c4_seq5.for.7442-8690.0.fasta -t /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91312.7442-8690.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91312.7442-8690.comp42663_c4_seq5.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/comp37769_c1_seq5.for.9450-10847.0.fasta -t /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91312.9450-10847.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91312.9450-10847.comp37769_c1_seq5.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/comp37769_c1_seq1.for.9449-10847.0.fasta -t /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91312.9449-10847.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91312.9449-10847.comp37769_c1_seq1.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:1 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91312.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/33/B3/Contig91312//theVoid.Contig91312/0/Contig91312.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91312.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/33/B3/Contig91312//theVoid.Contig91312/0/Contig91312.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91312.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/33/B3/Contig91312//theVoid.Contig91312/0/Contig91312.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91312.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/33/B3/Contig91312//theVoid.Contig91312/0/Contig91312.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91312.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/33/B3/Contig91312//theVoid.Contig91312/0/Contig91312.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91312.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/33/B3/Contig91312//theVoid.Contig91312/0/Contig91312.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91312.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/33/B3/Contig91312//theVoid.Contig91312/0/Contig91312.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91312.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/33/B3/Contig91312//theVoid.Contig91312/0/Contig91312.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91312.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/33/B3/Contig91312//theVoid.Contig91312/0/Contig91312.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91312.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/33/B3/Contig91312//theVoid.Contig91312/0/Contig91312.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:1 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/EKC38881%2E1.for.499-1451.0.fasta -t /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91312.499-1451.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91312.499-1451.EKC38881%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/EKC30558%2E1.for.7459-8357.0.fasta -t /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91312.7459-8357.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91312.7459-8357.EKC30558%2E1.p.exonerate #-------------------------------# cleaning blastx... flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig91314 Length: 7304 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/F0/99/Contig91314//theVoid.Contig91314/0/Contig91314.0.all.rb -species all -dir /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/F0/99/Contig91314//theVoid.Contig91314/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91314.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/F0/99/Contig91314//theVoid.Contig91314/0/Contig91314.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91314.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/F0/99/Contig91314//theVoid.Contig91314/0/Contig91314.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91314.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/F0/99/Contig91314//theVoid.Contig91314/0/Contig91314.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91314.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/F0/99/Contig91314//theVoid.Contig91314/0/Contig91314.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91314.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/F0/99/Contig91314//theVoid.Contig91314/0/Contig91314.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91314.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/F0/99/Contig91314//theVoid.Contig91314/0/Contig91314.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91314.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/F0/99/Contig91314//theVoid.Contig91314/0/Contig91314.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91314.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/F0/99/Contig91314//theVoid.Contig91314/0/Contig91314.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91314.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/F0/99/Contig91314//theVoid.Contig91314/0/Contig91314.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91314.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/F0/99/Contig91314//theVoid.Contig91314/0/Contig91314.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91314.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/F0/99/Contig91314//theVoid.Contig91314/0/Contig91314.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91314.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/F0/99/Contig91314//theVoid.Contig91314/0/Contig91314.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91314.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/F0/99/Contig91314//theVoid.Contig91314/0/Contig91314.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91314.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/F0/99/Contig91314//theVoid.Contig91314/0/Contig91314.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91314.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/F0/99/Contig91314//theVoid.Contig91314/0/Contig91314.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91314.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/F0/99/Contig91314//theVoid.Contig91314/0/Contig91314.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91314.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/F0/99/Contig91314//theVoid.Contig91314/0/Contig91314.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91314.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/F0/99/Contig91314//theVoid.Contig91314/0/Contig91314.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91314.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/F0/99/Contig91314//theVoid.Contig91314/0/Contig91314.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91314.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/F0/99/Contig91314//theVoid.Contig91314/0/Contig91314.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig91315 Length: 3525 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/1E/00/Contig91315//theVoid.Contig91315/0/Contig91315.0.all.rb -species all -dir /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/1E/00/Contig91315//theVoid.Contig91315/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91315.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/1E/00/Contig91315//theVoid.Contig91315/0/Contig91315.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91315.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/1E/00/Contig91315//theVoid.Contig91315/0/Contig91315.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91315.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/1E/00/Contig91315//theVoid.Contig91315/0/Contig91315.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91315.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/1E/00/Contig91315//theVoid.Contig91315/0/Contig91315.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91315.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/1E/00/Contig91315//theVoid.Contig91315/0/Contig91315.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91315.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/1E/00/Contig91315//theVoid.Contig91315/0/Contig91315.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91315.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/1E/00/Contig91315//theVoid.Contig91315/0/Contig91315.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91315.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/1E/00/Contig91315//theVoid.Contig91315/0/Contig91315.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91315.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/1E/00/Contig91315//theVoid.Contig91315/0/Contig91315.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91315.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/1E/00/Contig91315//theVoid.Contig91315/0/Contig91315.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/comp39506_c0_seq1.for.1517-2416.0.fasta -t /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91315.1517-2416.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91315.1517-2416.comp39506_c0_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/comp39506_c0_seq2.for.380-2481.0.fasta -t /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91315.380-2481.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91315.380-2481.comp39506_c0_seq2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/comp39506_c0_seq3.for.380-2481.0.fasta -t /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91315.380-2481.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91315.380-2481.comp39506_c0_seq3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/comp39506_c0_seq6.for.1498-2481.0.fasta -t /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91315.1498-2481.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91315.1498-2481.comp39506_c0_seq6.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:2 now processing 0 total clusters:2 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91315.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/1E/00/Contig91315//theVoid.Contig91315/0/Contig91315.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91315.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/1E/00/Contig91315//theVoid.Contig91315/0/Contig91315.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91315.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/1E/00/Contig91315//theVoid.Contig91315/0/Contig91315.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91315.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/1E/00/Contig91315//theVoid.Contig91315/0/Contig91315.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91315.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/1E/00/Contig91315//theVoid.Contig91315/0/Contig91315.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91315.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/1E/00/Contig91315//theVoid.Contig91315/0/Contig91315.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91315.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/1E/00/Contig91315//theVoid.Contig91315/0/Contig91315.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91315.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/1E/00/Contig91315//theVoid.Contig91315/0/Contig91315.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91315.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/1E/00/Contig91315//theVoid.Contig91315/0/Contig91315.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91315.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/1E/00/Contig91315//theVoid.Contig91315/0/Contig91315.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig91316 Length: 2325 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/0D/66/Contig91316//theVoid.Contig91316/0/Contig91316.0.all.rb -species all -dir /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/0D/66/Contig91316//theVoid.Contig91316/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91316.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/0D/66/Contig91316//theVoid.Contig91316/0/Contig91316.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91316.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/0D/66/Contig91316//theVoid.Contig91316/0/Contig91316.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91316.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/0D/66/Contig91316//theVoid.Contig91316/0/Contig91316.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91316.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/0D/66/Contig91316//theVoid.Contig91316/0/Contig91316.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91316.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/0D/66/Contig91316//theVoid.Contig91316/0/Contig91316.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91316.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/0D/66/Contig91316//theVoid.Contig91316/0/Contig91316.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91316.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/0D/66/Contig91316//theVoid.Contig91316/0/Contig91316.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91316.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/0D/66/Contig91316//theVoid.Contig91316/0/Contig91316.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91316.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/0D/66/Contig91316//theVoid.Contig91316/0/Contig91316.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91316.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/0D/66/Contig91316//theVoid.Contig91316/0/Contig91316.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91316.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/0D/66/Contig91316//theVoid.Contig91316/0/Contig91316.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91316.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/0D/66/Contig91316//theVoid.Contig91316/0/Contig91316.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91316.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/0D/66/Contig91316//theVoid.Contig91316/0/Contig91316.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91316.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/0D/66/Contig91316//theVoid.Contig91316/0/Contig91316.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91316.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/0D/66/Contig91316//theVoid.Contig91316/0/Contig91316.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91316.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/0D/66/Contig91316//theVoid.Contig91316/0/Contig91316.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91316.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/0D/66/Contig91316//theVoid.Contig91316/0/Contig91316.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91316.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/0D/66/Contig91316//theVoid.Contig91316/0/Contig91316.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91316.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/0D/66/Contig91316//theVoid.Contig91316/0/Contig91316.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91316.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/0D/66/Contig91316//theVoid.Contig91316/0/Contig91316.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig91317 Length: 4904 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/3C/E9/Contig91317//theVoid.Contig91317/0/Contig91317.0.all.rb -species all -dir /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/3C/E9/Contig91317//theVoid.Contig91317/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91317.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/3C/E9/Contig91317//theVoid.Contig91317/0/Contig91317.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91317.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/3C/E9/Contig91317//theVoid.Contig91317/0/Contig91317.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91317.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/3C/E9/Contig91317//theVoid.Contig91317/0/Contig91317.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91317.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/3C/E9/Contig91317//theVoid.Contig91317/0/Contig91317.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91317.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/3C/E9/Contig91317//theVoid.Contig91317/0/Contig91317.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91317.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/3C/E9/Contig91317//theVoid.Contig91317/0/Contig91317.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91317.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/3C/E9/Contig91317//theVoid.Contig91317/0/Contig91317.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91317.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/3C/E9/Contig91317//theVoid.Contig91317/0/Contig91317.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91317.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/3C/E9/Contig91317//theVoid.Contig91317/0/Contig91317.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91317.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/3C/E9/Contig91317//theVoid.Contig91317/0/Contig91317.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91317.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/3C/E9/Contig91317//theVoid.Contig91317/0/Contig91317.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91317.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/3C/E9/Contig91317//theVoid.Contig91317/0/Contig91317.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91317.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/3C/E9/Contig91317//theVoid.Contig91317/0/Contig91317.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91317.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/3C/E9/Contig91317//theVoid.Contig91317/0/Contig91317.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91317.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/3C/E9/Contig91317//theVoid.Contig91317/0/Contig91317.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91317.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/3C/E9/Contig91317//theVoid.Contig91317/0/Contig91317.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91317.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/3C/E9/Contig91317//theVoid.Contig91317/0/Contig91317.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91317.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/3C/E9/Contig91317//theVoid.Contig91317/0/Contig91317.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91317.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/3C/E9/Contig91317//theVoid.Contig91317/0/Contig91317.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91317.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/3C/E9/Contig91317//theVoid.Contig91317/0/Contig91317.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/XP_022344468%2E1.for.1-839.0.fasta -t /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91317.1-839.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91317.1-839.XP_022344468%2E1.p.exonerate #-------------------------------# cleaning blastx... flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig91318 Length: 1082 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/C3/6C/Contig91318//theVoid.Contig91318/0/Contig91318.0.all.rb -species all -dir /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/C3/6C/Contig91318//theVoid.Contig91318/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91318.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/C3/6C/Contig91318//theVoid.Contig91318/0/Contig91318.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91318.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/C3/6C/Contig91318//theVoid.Contig91318/0/Contig91318.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91318.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/C3/6C/Contig91318//theVoid.Contig91318/0/Contig91318.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91318.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/C3/6C/Contig91318//theVoid.Contig91318/0/Contig91318.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91318.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/C3/6C/Contig91318//theVoid.Contig91318/0/Contig91318.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91318.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/C3/6C/Contig91318//theVoid.Contig91318/0/Contig91318.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91318.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/C3/6C/Contig91318//theVoid.Contig91318/0/Contig91318.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91318.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/C3/6C/Contig91318//theVoid.Contig91318/0/Contig91318.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91318.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/C3/6C/Contig91318//theVoid.Contig91318/0/Contig91318.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91318.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/C3/6C/Contig91318//theVoid.Contig91318/0/Contig91318.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91318.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/C3/6C/Contig91318//theVoid.Contig91318/0/Contig91318.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91318.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/C3/6C/Contig91318//theVoid.Contig91318/0/Contig91318.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91318.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/C3/6C/Contig91318//theVoid.Contig91318/0/Contig91318.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91318.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/C3/6C/Contig91318//theVoid.Contig91318/0/Contig91318.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91318.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/C3/6C/Contig91318//theVoid.Contig91318/0/Contig91318.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91318.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/C3/6C/Contig91318//theVoid.Contig91318/0/Contig91318.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91318.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/C3/6C/Contig91318//theVoid.Contig91318/0/Contig91318.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91318.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/C3/6C/Contig91318//theVoid.Contig91318/0/Contig91318.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91318.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/C3/6C/Contig91318//theVoid.Contig91318/0/Contig91318.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91318.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/C3/6C/Contig91318//theVoid.Contig91318/0/Contig91318.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:1 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig91319 Length: 4045 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/A0/53/Contig91319//theVoid.Contig91319/0/Contig91319.0.all.rb -species all -dir /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/A0/53/Contig91319//theVoid.Contig91319/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91319.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/A0/53/Contig91319//theVoid.Contig91319/0/Contig91319.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91319.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/A0/53/Contig91319//theVoid.Contig91319/0/Contig91319.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91319.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/A0/53/Contig91319//theVoid.Contig91319/0/Contig91319.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91319.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/A0/53/Contig91319//theVoid.Contig91319/0/Contig91319.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91319.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/A0/53/Contig91319//theVoid.Contig91319/0/Contig91319.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91319.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/A0/53/Contig91319//theVoid.Contig91319/0/Contig91319.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91319.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/A0/53/Contig91319//theVoid.Contig91319/0/Contig91319.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91319.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/A0/53/Contig91319//theVoid.Contig91319/0/Contig91319.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91319.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/A0/53/Contig91319//theVoid.Contig91319/0/Contig91319.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91319.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/A0/53/Contig91319//theVoid.Contig91319/0/Contig91319.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/comp37486_c0_seq1.for.1593-2620.0.fasta -t /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91319.1593-2620.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91319.1593-2620.comp37486_c0_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/comp41217_c0_seq26.for.2375-3405.0.fasta -t /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91319.2375-3405.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91319.2375-3405.comp41217_c0_seq26.e.exonerate #-------------------------------# cleaning blastn... cleaning clusters.... total clusters:2 now processing 0 total clusters:2 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91319.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/A0/53/Contig91319//theVoid.Contig91319/0/Contig91319.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91319.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/A0/53/Contig91319//theVoid.Contig91319/0/Contig91319.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91319.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/A0/53/Contig91319//theVoid.Contig91319/0/Contig91319.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91319.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/A0/53/Contig91319//theVoid.Contig91319/0/Contig91319.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91319.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/A0/53/Contig91319//theVoid.Contig91319/0/Contig91319.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91319.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/A0/53/Contig91319//theVoid.Contig91319/0/Contig91319.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91319.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/A0/53/Contig91319//theVoid.Contig91319/0/Contig91319.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91319.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/A0/53/Contig91319//theVoid.Contig91319/0/Contig91319.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91319.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/A0/53/Contig91319//theVoid.Contig91319/0/Contig91319.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.3/cctools-temp-t.3.OZxBug/maker_ZonT1W/0/Contig91319.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.3/Olurida_v081.maker.output/Olurida_v081_datastore/A0/53/Contig91319//theVoid.Contig91319/0/Contig91319.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output Maker is now finished!!! Start_time: 1533652772 End_time: 1533653104 Elapsed: 332 ================================= Argument "2.53_01" isn't numeric in numeric ge (>=) at /usr/local/lib/x86_64-linux-gnu/perl/5.22.1/forks.pm line 1570. Unknown option: debug_size_limit STATUS: Parsing control files... STATUS: Processing and indexing input FASTA files... STATUS: Setting up database for any GFF3 input... A data structure will be created for you at: /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore To access files for individual sequences use the datastore index: /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_master_datastore_index.log STATUS: Now running MAKER... examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig96994 Length: 1667 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/CA/59/Contig96994//theVoid.Contig96994/0/Contig96994.0.all.rb -species all -dir /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/CA/59/Contig96994//theVoid.Contig96994/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96994.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/CA/59/Contig96994//theVoid.Contig96994/0/Contig96994.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96994.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/CA/59/Contig96994//theVoid.Contig96994/0/Contig96994.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96994.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/CA/59/Contig96994//theVoid.Contig96994/0/Contig96994.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96994.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/CA/59/Contig96994//theVoid.Contig96994/0/Contig96994.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96994.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/CA/59/Contig96994//theVoid.Contig96994/0/Contig96994.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96994.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/CA/59/Contig96994//theVoid.Contig96994/0/Contig96994.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96994.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/CA/59/Contig96994//theVoid.Contig96994/0/Contig96994.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96994.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/CA/59/Contig96994//theVoid.Contig96994/0/Contig96994.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96994.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/CA/59/Contig96994//theVoid.Contig96994/0/Contig96994.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96994.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/CA/59/Contig96994//theVoid.Contig96994/0/Contig96994.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96994.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/CA/59/Contig96994//theVoid.Contig96994/0/Contig96994.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96994.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/CA/59/Contig96994//theVoid.Contig96994/0/Contig96994.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96994.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/CA/59/Contig96994//theVoid.Contig96994/0/Contig96994.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96994.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/CA/59/Contig96994//theVoid.Contig96994/0/Contig96994.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96994.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/CA/59/Contig96994//theVoid.Contig96994/0/Contig96994.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96994.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/CA/59/Contig96994//theVoid.Contig96994/0/Contig96994.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96994.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/CA/59/Contig96994//theVoid.Contig96994/0/Contig96994.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96994.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/CA/59/Contig96994//theVoid.Contig96994/0/Contig96994.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96994.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/CA/59/Contig96994//theVoid.Contig96994/0/Contig96994.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96994.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/CA/59/Contig96994//theVoid.Contig96994/0/Contig96994.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig96995 Length: 18526 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/02/F6/Contig96995//theVoid.Contig96995/0/Contig96995.0.all.rb -species all -dir /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/02/F6/Contig96995//theVoid.Contig96995/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96995.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/02/F6/Contig96995//theVoid.Contig96995/0/Contig96995.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96995.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/02/F6/Contig96995//theVoid.Contig96995/0/Contig96995.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96995.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/02/F6/Contig96995//theVoid.Contig96995/0/Contig96995.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96995.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/02/F6/Contig96995//theVoid.Contig96995/0/Contig96995.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96995.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/02/F6/Contig96995//theVoid.Contig96995/0/Contig96995.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96995.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/02/F6/Contig96995//theVoid.Contig96995/0/Contig96995.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96995.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/02/F6/Contig96995//theVoid.Contig96995/0/Contig96995.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96995.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/02/F6/Contig96995//theVoid.Contig96995/0/Contig96995.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96995.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/02/F6/Contig96995//theVoid.Contig96995/0/Contig96995.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96995.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/02/F6/Contig96995//theVoid.Contig96995/0/Contig96995.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:4 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/comp33799_c0_seq1.for.1712-4020.0.fasta -t /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96995.1712-4020.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96995.1712-4020.comp33799_c0_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/comp38726_c2_seq3.for.1715-2617.0.fasta -t /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96995.1715-2617.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96995.1715-2617.comp38726_c2_seq3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/comp43364_c2_seq1.for.3730-4717.0.fasta -t /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96995.3730-4717.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96995.3730-4717.comp43364_c2_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/comp36187_c3_seq17.for.15561-16610.0.fasta -t /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96995.15561-16610.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96995.15561-16610.comp36187_c3_seq17.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/comp36187_c3_seq7.for.15561-16610.0.fasta -t /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96995.15561-16610.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96995.15561-16610.comp36187_c3_seq7.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:3 now processing 0 total clusters:3 now processing 0 total clusters:3 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96995.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/02/F6/Contig96995//theVoid.Contig96995/0/Contig96995.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96995.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/02/F6/Contig96995//theVoid.Contig96995/0/Contig96995.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96995.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/02/F6/Contig96995//theVoid.Contig96995/0/Contig96995.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96995.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/02/F6/Contig96995//theVoid.Contig96995/0/Contig96995.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96995.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/02/F6/Contig96995//theVoid.Contig96995/0/Contig96995.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96995.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/02/F6/Contig96995//theVoid.Contig96995/0/Contig96995.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96995.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/02/F6/Contig96995//theVoid.Contig96995/0/Contig96995.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96995.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/02/F6/Contig96995//theVoid.Contig96995/0/Contig96995.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96995.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/02/F6/Contig96995//theVoid.Contig96995/0/Contig96995.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96995.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/02/F6/Contig96995//theVoid.Contig96995/0/Contig96995.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig96996 Length: 3676 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/C2/FA/Contig96996//theVoid.Contig96996/0/Contig96996.0.all.rb -species all -dir /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/C2/FA/Contig96996//theVoid.Contig96996/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96996.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/C2/FA/Contig96996//theVoid.Contig96996/0/Contig96996.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96996.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/C2/FA/Contig96996//theVoid.Contig96996/0/Contig96996.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96996.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/C2/FA/Contig96996//theVoid.Contig96996/0/Contig96996.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96996.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/C2/FA/Contig96996//theVoid.Contig96996/0/Contig96996.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96996.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/C2/FA/Contig96996//theVoid.Contig96996/0/Contig96996.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96996.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/C2/FA/Contig96996//theVoid.Contig96996/0/Contig96996.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96996.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/C2/FA/Contig96996//theVoid.Contig96996/0/Contig96996.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96996.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/C2/FA/Contig96996//theVoid.Contig96996/0/Contig96996.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96996.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/C2/FA/Contig96996//theVoid.Contig96996/0/Contig96996.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96996.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/C2/FA/Contig96996//theVoid.Contig96996/0/Contig96996.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96996.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/C2/FA/Contig96996//theVoid.Contig96996/0/Contig96996.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96996.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/C2/FA/Contig96996//theVoid.Contig96996/0/Contig96996.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96996.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/C2/FA/Contig96996//theVoid.Contig96996/0/Contig96996.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96996.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/C2/FA/Contig96996//theVoid.Contig96996/0/Contig96996.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96996.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/C2/FA/Contig96996//theVoid.Contig96996/0/Contig96996.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96996.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/C2/FA/Contig96996//theVoid.Contig96996/0/Contig96996.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96996.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/C2/FA/Contig96996//theVoid.Contig96996/0/Contig96996.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96996.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/C2/FA/Contig96996//theVoid.Contig96996/0/Contig96996.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96996.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/C2/FA/Contig96996//theVoid.Contig96996/0/Contig96996.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96996.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/C2/FA/Contig96996//theVoid.Contig96996/0/Contig96996.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig96997 Length: 7427 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/2C/9F/Contig96997//theVoid.Contig96997/0/Contig96997.0.all.rb -species all -dir /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/2C/9F/Contig96997//theVoid.Contig96997/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96997.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/2C/9F/Contig96997//theVoid.Contig96997/0/Contig96997.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96997.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/2C/9F/Contig96997//theVoid.Contig96997/0/Contig96997.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96997.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/2C/9F/Contig96997//theVoid.Contig96997/0/Contig96997.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96997.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/2C/9F/Contig96997//theVoid.Contig96997/0/Contig96997.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96997.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/2C/9F/Contig96997//theVoid.Contig96997/0/Contig96997.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96997.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/2C/9F/Contig96997//theVoid.Contig96997/0/Contig96997.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96997.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/2C/9F/Contig96997//theVoid.Contig96997/0/Contig96997.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96997.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/2C/9F/Contig96997//theVoid.Contig96997/0/Contig96997.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96997.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/2C/9F/Contig96997//theVoid.Contig96997/0/Contig96997.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96997.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/2C/9F/Contig96997//theVoid.Contig96997/0/Contig96997.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96997.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/2C/9F/Contig96997//theVoid.Contig96997/0/Contig96997.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:5 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96997.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/2C/9F/Contig96997//theVoid.Contig96997/0/Contig96997.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:3 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96997.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/2C/9F/Contig96997//theVoid.Contig96997/0/Contig96997.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:6 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96997.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/2C/9F/Contig96997//theVoid.Contig96997/0/Contig96997.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:9 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96997.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/2C/9F/Contig96997//theVoid.Contig96997/0/Contig96997.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:6 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96997.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/2C/9F/Contig96997//theVoid.Contig96997/0/Contig96997.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:5 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96997.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/2C/9F/Contig96997//theVoid.Contig96997/0/Contig96997.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:3 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96997.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/2C/9F/Contig96997//theVoid.Contig96997/0/Contig96997.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:6 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96997.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/2C/9F/Contig96997//theVoid.Contig96997/0/Contig96997.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:6 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96997.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/2C/9F/Contig96997//theVoid.Contig96997/0/Contig96997.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:8 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/XP_022334972%2E1.for.1933-3999.0.fasta -t /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96997.1933-3999.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96997.1933-3999.XP_022334972%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/EKC20551%2E1.for.1930-2900.0.fasta -t /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96997.1930-2900.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96997.1930-2900.EKC20551%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/XP_022334236%2E1.for.1915-2903.0.fasta -t /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96997.1915-2903.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96997.1915-2903.XP_022334236%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/XP_022345867%2E1.for.1921-2906.0.fasta -t /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96997.1921-2906.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96997.1921-2906.XP_022345867%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/EKC30046%2E1.for.1921-2906.0.fasta -t /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96997.1921-2906.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96997.1921-2906.EKC30046%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/EKC20377%2E1.for.1933-3999.0.fasta -t /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96997.1933-3999.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96997.1933-3999.EKC20377%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/XP_022292539%2E1.for.1903-2906.0.fasta -t /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96997.1903-2906.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96997.1903-2906.XP_022292539%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/XP_022338769%2E1.for.1903-2906.0.fasta -t /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96997.1903-2906.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96997.1903-2906.XP_022338769%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/XP_022337040%2E1.for.1930-2900.0.fasta -t /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96997.1930-2900.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96997.1930-2900.XP_022337040%2E1.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:1 now processing 0 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:1 now processing 0 ...processing 0 of 2 ...processing 1 of 2 flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig96998 Length: 13169 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/1F/25/Contig96998//theVoid.Contig96998/0/Contig96998.0.all.rb -species all -dir /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/1F/25/Contig96998//theVoid.Contig96998/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96998.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/1F/25/Contig96998//theVoid.Contig96998/0/Contig96998.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96998.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/1F/25/Contig96998//theVoid.Contig96998/0/Contig96998.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96998.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/1F/25/Contig96998//theVoid.Contig96998/0/Contig96998.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96998.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/1F/25/Contig96998//theVoid.Contig96998/0/Contig96998.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96998.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/1F/25/Contig96998//theVoid.Contig96998/0/Contig96998.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96998.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/1F/25/Contig96998//theVoid.Contig96998/0/Contig96998.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:7 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96998.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/1F/25/Contig96998//theVoid.Contig96998/0/Contig96998.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:8 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96998.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/1F/25/Contig96998//theVoid.Contig96998/0/Contig96998.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:7 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96998.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/1F/25/Contig96998//theVoid.Contig96998/0/Contig96998.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96998.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/1F/25/Contig96998//theVoid.Contig96998/0/Contig96998.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:3 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/comp37904_c4_seq1.for.4208-5322.0.fasta -t /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96998.4208-5322.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96998.4208-5322.comp37904_c4_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/comp38499_c0_seq1.for.10923-11844.0.fasta -t /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96998.10923-11844.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96998.10923-11844.comp38499_c0_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/comp44666_c0_seq15.for.11731-12751.0.fasta -t /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96998.11731-12751.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96998.11731-12751.comp44666_c0_seq15.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:2 now processing 0 total clusters:2 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96998.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/1F/25/Contig96998//theVoid.Contig96998/0/Contig96998.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96998.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/1F/25/Contig96998//theVoid.Contig96998/0/Contig96998.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96998.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/1F/25/Contig96998//theVoid.Contig96998/0/Contig96998.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96998.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/1F/25/Contig96998//theVoid.Contig96998/0/Contig96998.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96998.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/1F/25/Contig96998//theVoid.Contig96998/0/Contig96998.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96998.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/1F/25/Contig96998//theVoid.Contig96998/0/Contig96998.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96998.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/1F/25/Contig96998//theVoid.Contig96998/0/Contig96998.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96998.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/1F/25/Contig96998//theVoid.Contig96998/0/Contig96998.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96998.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/1F/25/Contig96998//theVoid.Contig96998/0/Contig96998.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96998.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/1F/25/Contig96998//theVoid.Contig96998/0/Contig96998.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig96999 Length: 5047 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/E0/05/Contig96999//theVoid.Contig96999/0/Contig96999.0.all.rb -species all -dir /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/E0/05/Contig96999//theVoid.Contig96999/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96999.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/E0/05/Contig96999//theVoid.Contig96999/0/Contig96999.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96999.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/E0/05/Contig96999//theVoid.Contig96999/0/Contig96999.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96999.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/E0/05/Contig96999//theVoid.Contig96999/0/Contig96999.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96999.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/E0/05/Contig96999//theVoid.Contig96999/0/Contig96999.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96999.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/E0/05/Contig96999//theVoid.Contig96999/0/Contig96999.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96999.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/E0/05/Contig96999//theVoid.Contig96999/0/Contig96999.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96999.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/E0/05/Contig96999//theVoid.Contig96999/0/Contig96999.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96999.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/E0/05/Contig96999//theVoid.Contig96999/0/Contig96999.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96999.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/E0/05/Contig96999//theVoid.Contig96999/0/Contig96999.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96999.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/E0/05/Contig96999//theVoid.Contig96999/0/Contig96999.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/comp1377_c0_seq1.for.1060-1963.0.fasta -t /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96999.1060-1963.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96999.1060-1963.comp1377_c0_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/comp19452_c1_seq1.for.3623-4644.0.fasta -t /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96999.3623-4644.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96999.3623-4644.comp19452_c1_seq1.e.exonerate #-------------------------------# cleaning blastn... cleaning clusters.... total clusters:2 now processing 0 total clusters:2 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96999.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/E0/05/Contig96999//theVoid.Contig96999/0/Contig96999.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96999.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/E0/05/Contig96999//theVoid.Contig96999/0/Contig96999.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96999.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/E0/05/Contig96999//theVoid.Contig96999/0/Contig96999.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96999.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/E0/05/Contig96999//theVoid.Contig96999/0/Contig96999.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96999.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/E0/05/Contig96999//theVoid.Contig96999/0/Contig96999.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96999.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/E0/05/Contig96999//theVoid.Contig96999/0/Contig96999.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96999.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/E0/05/Contig96999//theVoid.Contig96999/0/Contig96999.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96999.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/E0/05/Contig96999//theVoid.Contig96999/0/Contig96999.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96999.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/E0/05/Contig96999//theVoid.Contig96999/0/Contig96999.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96999.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/E0/05/Contig96999//theVoid.Contig96999/0/Contig96999.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:1 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/XP_022291421%2E1.for.3736-4733.0.fasta -t /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96999.3736-4733.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96999.3736-4733.XP_022291421%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/XP_022306542%2E1.for.3736-4773.0.fasta -t /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96999.3736-4773.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96999.3736-4773.XP_022306542%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/XP_022298612%2E1.for.3736-4773.0.fasta -t /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96999.3736-4773.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96999.3736-4773.XP_022298612%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/XP_022306533%2E1.for.3736-4773.0.fasta -t /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96999.3736-4773.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig96999.3736-4773.XP_022306533%2E1.p.exonerate #-------------------------------# cleaning blastx... flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig97000 Length: 1739 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/5A/E3/Contig97000//theVoid.Contig97000/0/Contig97000.0.all.rb -species all -dir /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/5A/E3/Contig97000//theVoid.Contig97000/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97000.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/5A/E3/Contig97000//theVoid.Contig97000/0/Contig97000.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97000.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/5A/E3/Contig97000//theVoid.Contig97000/0/Contig97000.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97000.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/5A/E3/Contig97000//theVoid.Contig97000/0/Contig97000.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97000.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/5A/E3/Contig97000//theVoid.Contig97000/0/Contig97000.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97000.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/5A/E3/Contig97000//theVoid.Contig97000/0/Contig97000.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97000.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/5A/E3/Contig97000//theVoid.Contig97000/0/Contig97000.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97000.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/5A/E3/Contig97000//theVoid.Contig97000/0/Contig97000.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97000.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/5A/E3/Contig97000//theVoid.Contig97000/0/Contig97000.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97000.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/5A/E3/Contig97000//theVoid.Contig97000/0/Contig97000.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97000.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/5A/E3/Contig97000//theVoid.Contig97000/0/Contig97000.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97000.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/5A/E3/Contig97000//theVoid.Contig97000/0/Contig97000.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97000.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/5A/E3/Contig97000//theVoid.Contig97000/0/Contig97000.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97000.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/5A/E3/Contig97000//theVoid.Contig97000/0/Contig97000.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97000.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/5A/E3/Contig97000//theVoid.Contig97000/0/Contig97000.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97000.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/5A/E3/Contig97000//theVoid.Contig97000/0/Contig97000.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97000.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/5A/E3/Contig97000//theVoid.Contig97000/0/Contig97000.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97000.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/5A/E3/Contig97000//theVoid.Contig97000/0/Contig97000.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97000.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/5A/E3/Contig97000//theVoid.Contig97000/0/Contig97000.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97000.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/5A/E3/Contig97000//theVoid.Contig97000/0/Contig97000.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97000.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/5A/E3/Contig97000//theVoid.Contig97000/0/Contig97000.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig97002 Length: 8633 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/A8/C5/Contig97002//theVoid.Contig97002/0/Contig97002.0.all.rb -species all -dir /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/A8/C5/Contig97002//theVoid.Contig97002/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97002.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/A8/C5/Contig97002//theVoid.Contig97002/0/Contig97002.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97002.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/A8/C5/Contig97002//theVoid.Contig97002/0/Contig97002.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97002.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/A8/C5/Contig97002//theVoid.Contig97002/0/Contig97002.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97002.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/A8/C5/Contig97002//theVoid.Contig97002/0/Contig97002.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97002.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/A8/C5/Contig97002//theVoid.Contig97002/0/Contig97002.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97002.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/A8/C5/Contig97002//theVoid.Contig97002/0/Contig97002.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97002.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/A8/C5/Contig97002//theVoid.Contig97002/0/Contig97002.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97002.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/A8/C5/Contig97002//theVoid.Contig97002/0/Contig97002.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97002.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/A8/C5/Contig97002//theVoid.Contig97002/0/Contig97002.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97002.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/A8/C5/Contig97002//theVoid.Contig97002/0/Contig97002.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97002.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/A8/C5/Contig97002//theVoid.Contig97002/0/Contig97002.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97002.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/A8/C5/Contig97002//theVoid.Contig97002/0/Contig97002.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97002.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/A8/C5/Contig97002//theVoid.Contig97002/0/Contig97002.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97002.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/A8/C5/Contig97002//theVoid.Contig97002/0/Contig97002.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97002.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/A8/C5/Contig97002//theVoid.Contig97002/0/Contig97002.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97002.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/A8/C5/Contig97002//theVoid.Contig97002/0/Contig97002.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97002.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/A8/C5/Contig97002//theVoid.Contig97002/0/Contig97002.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97002.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/A8/C5/Contig97002//theVoid.Contig97002/0/Contig97002.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97002.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/A8/C5/Contig97002//theVoid.Contig97002/0/Contig97002.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97002.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/A8/C5/Contig97002//theVoid.Contig97002/0/Contig97002.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig97003 Length: 1400 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/4A/47/Contig97003//theVoid.Contig97003/0/Contig97003.0.all.rb -species all -dir /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/4A/47/Contig97003//theVoid.Contig97003/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97003.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/4A/47/Contig97003//theVoid.Contig97003/0/Contig97003.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97003.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/4A/47/Contig97003//theVoid.Contig97003/0/Contig97003.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97003.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/4A/47/Contig97003//theVoid.Contig97003/0/Contig97003.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97003.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/4A/47/Contig97003//theVoid.Contig97003/0/Contig97003.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97003.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/4A/47/Contig97003//theVoid.Contig97003/0/Contig97003.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97003.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/4A/47/Contig97003//theVoid.Contig97003/0/Contig97003.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97003.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/4A/47/Contig97003//theVoid.Contig97003/0/Contig97003.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97003.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/4A/47/Contig97003//theVoid.Contig97003/0/Contig97003.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97003.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/4A/47/Contig97003//theVoid.Contig97003/0/Contig97003.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97003.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/4A/47/Contig97003//theVoid.Contig97003/0/Contig97003.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97003.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/4A/47/Contig97003//theVoid.Contig97003/0/Contig97003.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97003.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/4A/47/Contig97003//theVoid.Contig97003/0/Contig97003.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97003.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/4A/47/Contig97003//theVoid.Contig97003/0/Contig97003.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97003.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/4A/47/Contig97003//theVoid.Contig97003/0/Contig97003.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97003.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/4A/47/Contig97003//theVoid.Contig97003/0/Contig97003.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97003.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/4A/47/Contig97003//theVoid.Contig97003/0/Contig97003.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97003.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/4A/47/Contig97003//theVoid.Contig97003/0/Contig97003.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97003.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/4A/47/Contig97003//theVoid.Contig97003/0/Contig97003.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97003.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/4A/47/Contig97003//theVoid.Contig97003/0/Contig97003.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97003.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/4A/47/Contig97003//theVoid.Contig97003/0/Contig97003.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig97004 Length: 2559 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/24/44/Contig97004//theVoid.Contig97004/0/Contig97004.0.all.rb -species all -dir /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/24/44/Contig97004//theVoid.Contig97004/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97004.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/24/44/Contig97004//theVoid.Contig97004/0/Contig97004.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97004.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/24/44/Contig97004//theVoid.Contig97004/0/Contig97004.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97004.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/24/44/Contig97004//theVoid.Contig97004/0/Contig97004.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97004.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/24/44/Contig97004//theVoid.Contig97004/0/Contig97004.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97004.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/24/44/Contig97004//theVoid.Contig97004/0/Contig97004.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97004.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/24/44/Contig97004//theVoid.Contig97004/0/Contig97004.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97004.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/24/44/Contig97004//theVoid.Contig97004/0/Contig97004.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97004.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/24/44/Contig97004//theVoid.Contig97004/0/Contig97004.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97004.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/24/44/Contig97004//theVoid.Contig97004/0/Contig97004.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97004.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/24/44/Contig97004//theVoid.Contig97004/0/Contig97004.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97004.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/24/44/Contig97004//theVoid.Contig97004/0/Contig97004.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97004.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/24/44/Contig97004//theVoid.Contig97004/0/Contig97004.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97004.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/24/44/Contig97004//theVoid.Contig97004/0/Contig97004.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97004.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/24/44/Contig97004//theVoid.Contig97004/0/Contig97004.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97004.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/24/44/Contig97004//theVoid.Contig97004/0/Contig97004.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97004.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/24/44/Contig97004//theVoid.Contig97004/0/Contig97004.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97004.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/24/44/Contig97004//theVoid.Contig97004/0/Contig97004.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97004.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/24/44/Contig97004//theVoid.Contig97004/0/Contig97004.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97004.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/24/44/Contig97004//theVoid.Contig97004/0/Contig97004.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.5/cctools-temp-t.5.ei7A6G/maker_IFDkKD/0/Contig97004.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/24/44/Contig97004//theVoid.Contig97004/0/Contig97004.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output Maker is now finished!!! Start_time: 1533652772 End_time: 1533653115 Elapsed: 343 ================================= Argument "2.53_01" isn't numeric in numeric ge (>=) at /usr/local/lib/x86_64-linux-gnu/perl/5.22.1/forks.pm line 1570. Unknown option: debug_size_limit STATUS: Parsing control files... STATUS: Processing and indexing input FASTA files... STATUS: Setting up database for any GFF3 input... A data structure will be created for you at: /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore To access files for individual sequences use the datastore index: /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_master_datastore_index.log STATUS: Now running MAKER... examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig75424 Length: 2307 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/12/DE/Contig75424//theVoid.Contig75424/0/Contig75424.0.all.rb -species all -dir /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/12/DE/Contig75424//theVoid.Contig75424/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75424.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/12/DE/Contig75424//theVoid.Contig75424/0/Contig75424.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75424.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/12/DE/Contig75424//theVoid.Contig75424/0/Contig75424.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75424.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/12/DE/Contig75424//theVoid.Contig75424/0/Contig75424.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75424.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/12/DE/Contig75424//theVoid.Contig75424/0/Contig75424.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75424.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/12/DE/Contig75424//theVoid.Contig75424/0/Contig75424.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75424.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/12/DE/Contig75424//theVoid.Contig75424/0/Contig75424.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75424.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/12/DE/Contig75424//theVoid.Contig75424/0/Contig75424.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75424.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/12/DE/Contig75424//theVoid.Contig75424/0/Contig75424.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75424.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/12/DE/Contig75424//theVoid.Contig75424/0/Contig75424.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75424.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/12/DE/Contig75424//theVoid.Contig75424/0/Contig75424.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:3 hits collecting blastn reports flattening EST clusters doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75424.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/12/DE/Contig75424//theVoid.Contig75424/0/Contig75424.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75424.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/12/DE/Contig75424//theVoid.Contig75424/0/Contig75424.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75424.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/12/DE/Contig75424//theVoid.Contig75424/0/Contig75424.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75424.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/12/DE/Contig75424//theVoid.Contig75424/0/Contig75424.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75424.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/12/DE/Contig75424//theVoid.Contig75424/0/Contig75424.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75424.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/12/DE/Contig75424//theVoid.Contig75424/0/Contig75424.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75424.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/12/DE/Contig75424//theVoid.Contig75424/0/Contig75424.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75424.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/12/DE/Contig75424//theVoid.Contig75424/0/Contig75424.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75424.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/12/DE/Contig75424//theVoid.Contig75424/0/Contig75424.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75424.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/12/DE/Contig75424//theVoid.Contig75424/0/Contig75424.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig75425 Length: 5465 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/DC/12/Contig75425//theVoid.Contig75425/0/Contig75425.0.all.rb -species all -dir /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/DC/12/Contig75425//theVoid.Contig75425/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75425.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/DC/12/Contig75425//theVoid.Contig75425/0/Contig75425.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75425.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/DC/12/Contig75425//theVoid.Contig75425/0/Contig75425.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75425.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/DC/12/Contig75425//theVoid.Contig75425/0/Contig75425.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75425.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/DC/12/Contig75425//theVoid.Contig75425/0/Contig75425.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75425.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/DC/12/Contig75425//theVoid.Contig75425/0/Contig75425.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75425.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/DC/12/Contig75425//theVoid.Contig75425/0/Contig75425.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75425.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/DC/12/Contig75425//theVoid.Contig75425/0/Contig75425.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75425.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/DC/12/Contig75425//theVoid.Contig75425/0/Contig75425.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75425.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/DC/12/Contig75425//theVoid.Contig75425/0/Contig75425.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75425.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/DC/12/Contig75425//theVoid.Contig75425/0/Contig75425.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:3 hits collecting blastn reports polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/comp33085_c1_seq1.for.2198-3145.0.fasta -t /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75425.2198-3145.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75425.2198-3145.comp33085_c1_seq1.e.exonerate #-------------------------------# cleaning blastn... flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75425.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/DC/12/Contig75425//theVoid.Contig75425/0/Contig75425.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:9 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75425.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/DC/12/Contig75425//theVoid.Contig75425/0/Contig75425.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:9 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75425.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/DC/12/Contig75425//theVoid.Contig75425/0/Contig75425.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:10 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75425.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/DC/12/Contig75425//theVoid.Contig75425/0/Contig75425.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:8 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75425.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/DC/12/Contig75425//theVoid.Contig75425/0/Contig75425.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:6 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75425.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/DC/12/Contig75425//theVoid.Contig75425/0/Contig75425.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:10 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75425.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/DC/12/Contig75425//theVoid.Contig75425/0/Contig75425.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:12 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75425.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/DC/12/Contig75425//theVoid.Contig75425/0/Contig75425.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:6 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75425.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/DC/12/Contig75425//theVoid.Contig75425/0/Contig75425.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:10 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75425.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/DC/12/Contig75425//theVoid.Contig75425/0/Contig75425.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:13 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/XP_022333461%2E1.for.3238-5465.0.fasta -t /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75425.3238-5465.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75425.3238-5465.XP_022333461%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/XP_022307894%2E1.for.3554-5465.0.fasta -t /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75425.3554-5465.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75425.3554-5465.XP_022307894%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/XP_022307395%2E1.for.3238-5465.0.fasta -t /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75425.3238-5465.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75425.3238-5465.XP_022307395%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/XP_022307956%2E1.for.3238-5465.0.fasta -t /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75425.3238-5465.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75425.3238-5465.XP_022307956%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/XP_022300886%2E1.for.3421-4593.0.fasta -t /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75425.3421-4593.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75425.3421-4593.XP_022300886%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/XP_022307938%2E1.for.3737-5465.0.fasta -t /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75425.3737-5465.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75425.3737-5465.XP_022307938%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/XP_022300829%2E1.for.4180-5465.0.fasta -t /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75425.4180-5465.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75425.4180-5465.XP_022300829%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/XP_022320840%2E1.for.4162-5465.0.fasta -t /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75425.4162-5465.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75425.4162-5465.XP_022320840%2E1.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:1 now processing 0 ...processing 0 of 2 ...processing 1 of 2 cleaning clusters.... total clusters:1 now processing 0 flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig75426 Length: 14189 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/E7/62/Contig75426//theVoid.Contig75426/0/Contig75426.0.all.rb -species all -dir /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/E7/62/Contig75426//theVoid.Contig75426/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75426.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/E7/62/Contig75426//theVoid.Contig75426/0/Contig75426.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75426.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/E7/62/Contig75426//theVoid.Contig75426/0/Contig75426.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75426.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/E7/62/Contig75426//theVoid.Contig75426/0/Contig75426.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75426.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/E7/62/Contig75426//theVoid.Contig75426/0/Contig75426.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75426.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/E7/62/Contig75426//theVoid.Contig75426/0/Contig75426.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75426.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/E7/62/Contig75426//theVoid.Contig75426/0/Contig75426.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75426.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/E7/62/Contig75426//theVoid.Contig75426/0/Contig75426.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:7 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75426.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/E7/62/Contig75426//theVoid.Contig75426/0/Contig75426.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75426.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/E7/62/Contig75426//theVoid.Contig75426/0/Contig75426.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75426.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/E7/62/Contig75426//theVoid.Contig75426/0/Contig75426.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:3 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/comp39129_c2_seq66.for.8745-9775.0.fasta -t /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75426.8745-9775.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75426.8745-9775.comp39129_c2_seq66.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/comp37673_c2_seq9.for.9863-10867.0.fasta -t /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75426.9863-10867.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75426.9863-10867.comp37673_c2_seq9.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/comp36112_c1_seq1.for.13080-14189.0.fasta -t /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75426.13080-14189.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75426.13080-14189.comp36112_c1_seq1.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:3 now processing 0 total clusters:3 now processing 0 total clusters:3 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75426.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/E7/62/Contig75426//theVoid.Contig75426/0/Contig75426.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75426.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/E7/62/Contig75426//theVoid.Contig75426/0/Contig75426.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75426.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/E7/62/Contig75426//theVoid.Contig75426/0/Contig75426.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75426.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/E7/62/Contig75426//theVoid.Contig75426/0/Contig75426.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75426.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/E7/62/Contig75426//theVoid.Contig75426/0/Contig75426.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75426.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/E7/62/Contig75426//theVoid.Contig75426/0/Contig75426.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75426.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/E7/62/Contig75426//theVoid.Contig75426/0/Contig75426.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75426.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/E7/62/Contig75426//theVoid.Contig75426/0/Contig75426.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75426.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/E7/62/Contig75426//theVoid.Contig75426/0/Contig75426.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75426.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/E7/62/Contig75426//theVoid.Contig75426/0/Contig75426.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig75427 Length: 1185 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/A6/C5/Contig75427//theVoid.Contig75427/0/Contig75427.0.all.rb -species all -dir /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/A6/C5/Contig75427//theVoid.Contig75427/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75427.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/A6/C5/Contig75427//theVoid.Contig75427/0/Contig75427.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75427.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/A6/C5/Contig75427//theVoid.Contig75427/0/Contig75427.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75427.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/A6/C5/Contig75427//theVoid.Contig75427/0/Contig75427.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75427.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/A6/C5/Contig75427//theVoid.Contig75427/0/Contig75427.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75427.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/A6/C5/Contig75427//theVoid.Contig75427/0/Contig75427.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75427.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/A6/C5/Contig75427//theVoid.Contig75427/0/Contig75427.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75427.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/A6/C5/Contig75427//theVoid.Contig75427/0/Contig75427.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75427.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/A6/C5/Contig75427//theVoid.Contig75427/0/Contig75427.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75427.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/A6/C5/Contig75427//theVoid.Contig75427/0/Contig75427.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75427.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/A6/C5/Contig75427//theVoid.Contig75427/0/Contig75427.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75427.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/A6/C5/Contig75427//theVoid.Contig75427/0/Contig75427.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75427.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/A6/C5/Contig75427//theVoid.Contig75427/0/Contig75427.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75427.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/A6/C5/Contig75427//theVoid.Contig75427/0/Contig75427.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75427.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/A6/C5/Contig75427//theVoid.Contig75427/0/Contig75427.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75427.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/A6/C5/Contig75427//theVoid.Contig75427/0/Contig75427.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75427.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/A6/C5/Contig75427//theVoid.Contig75427/0/Contig75427.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75427.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/A6/C5/Contig75427//theVoid.Contig75427/0/Contig75427.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75427.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/A6/C5/Contig75427//theVoid.Contig75427/0/Contig75427.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75427.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/A6/C5/Contig75427//theVoid.Contig75427/0/Contig75427.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75427.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/A6/C5/Contig75427//theVoid.Contig75427/0/Contig75427.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig75428 Length: 15321 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/F9/3A/Contig75428//theVoid.Contig75428/0/Contig75428.0.all.rb -species all -dir /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/F9/3A/Contig75428//theVoid.Contig75428/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75428.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/F9/3A/Contig75428//theVoid.Contig75428/0/Contig75428.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75428.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/F9/3A/Contig75428//theVoid.Contig75428/0/Contig75428.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75428.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/F9/3A/Contig75428//theVoid.Contig75428/0/Contig75428.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75428.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/F9/3A/Contig75428//theVoid.Contig75428/0/Contig75428.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75428.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/F9/3A/Contig75428//theVoid.Contig75428/0/Contig75428.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75428.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/F9/3A/Contig75428//theVoid.Contig75428/0/Contig75428.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75428.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/F9/3A/Contig75428//theVoid.Contig75428/0/Contig75428.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75428.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/F9/3A/Contig75428//theVoid.Contig75428/0/Contig75428.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75428.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/F9/3A/Contig75428//theVoid.Contig75428/0/Contig75428.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75428.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/F9/3A/Contig75428//theVoid.Contig75428/0/Contig75428.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75428.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/F9/3A/Contig75428//theVoid.Contig75428/0/Contig75428.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75428.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/F9/3A/Contig75428//theVoid.Contig75428/0/Contig75428.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75428.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/F9/3A/Contig75428//theVoid.Contig75428/0/Contig75428.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75428.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/F9/3A/Contig75428//theVoid.Contig75428/0/Contig75428.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75428.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/F9/3A/Contig75428//theVoid.Contig75428/0/Contig75428.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75428.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/F9/3A/Contig75428//theVoid.Contig75428/0/Contig75428.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75428.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/F9/3A/Contig75428//theVoid.Contig75428/0/Contig75428.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75428.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/F9/3A/Contig75428//theVoid.Contig75428/0/Contig75428.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75428.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/F9/3A/Contig75428//theVoid.Contig75428/0/Contig75428.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75428.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/F9/3A/Contig75428//theVoid.Contig75428/0/Contig75428.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig75429 Length: 9994 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/32/FD/Contig75429//theVoid.Contig75429/0/Contig75429.0.all.rb -species all -dir /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/32/FD/Contig75429//theVoid.Contig75429/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75429.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/32/FD/Contig75429//theVoid.Contig75429/0/Contig75429.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75429.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/32/FD/Contig75429//theVoid.Contig75429/0/Contig75429.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75429.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/32/FD/Contig75429//theVoid.Contig75429/0/Contig75429.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75429.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/32/FD/Contig75429//theVoid.Contig75429/0/Contig75429.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75429.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/32/FD/Contig75429//theVoid.Contig75429/0/Contig75429.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75429.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/32/FD/Contig75429//theVoid.Contig75429/0/Contig75429.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75429.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/32/FD/Contig75429//theVoid.Contig75429/0/Contig75429.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75429.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/32/FD/Contig75429//theVoid.Contig75429/0/Contig75429.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75429.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/32/FD/Contig75429//theVoid.Contig75429/0/Contig75429.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75429.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/32/FD/Contig75429//theVoid.Contig75429/0/Contig75429.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/comp43472_c3_seq9.for.2922-3818.0.fasta -t /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75429.2922-3818.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75429.2922-3818.comp43472_c3_seq9.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/comp37904_c4_seq1.for.3253-4267.0.fasta -t /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75429.3253-4267.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75429.3253-4267.comp37904_c4_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/comp36378_c1_seq1.for.7960-8911.0.fasta -t /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75429.7960-8911.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75429.7960-8911.comp36378_c1_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/comp36378_c0_seq5.for.8231-9289.0.fasta -t /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75429.8231-9289.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75429.8231-9289.comp36378_c0_seq5.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:3 now processing 0 total clusters:3 now processing 0 total clusters:3 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75429.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/32/FD/Contig75429//theVoid.Contig75429/0/Contig75429.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:20 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75429.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/32/FD/Contig75429//theVoid.Contig75429/0/Contig75429.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:15 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75429.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/32/FD/Contig75429//theVoid.Contig75429/0/Contig75429.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:20 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75429.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/32/FD/Contig75429//theVoid.Contig75429/0/Contig75429.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:17 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75429.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/32/FD/Contig75429//theVoid.Contig75429/0/Contig75429.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:14 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75429.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/32/FD/Contig75429//theVoid.Contig75429/0/Contig75429.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:15 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75429.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/32/FD/Contig75429//theVoid.Contig75429/0/Contig75429.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:19 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75429.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/32/FD/Contig75429//theVoid.Contig75429/0/Contig75429.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:21 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75429.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/32/FD/Contig75429//theVoid.Contig75429/0/Contig75429.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:22 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75429.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/32/FD/Contig75429//theVoid.Contig75429/0/Contig75429.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:20 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/XP_022320634%2E1.for.201-3091.0.fasta -t /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75429.201-3091.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75429.201-3091.XP_022320634%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/XP_022320635%2E1.for.201-3091.0.fasta -t /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75429.201-3091.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75429.201-3091.XP_022320635%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/EKC18334%2E1.for.201-3091.0.fasta -t /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75429.201-3091.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75429.201-3091.EKC18334%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/XP_022320636%2E1.for.201-3091.0.fasta -t /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75429.201-3091.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75429.201-3091.XP_022320636%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/XP_022320637%2E1.for.201-3091.0.fasta -t /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75429.201-3091.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75429.201-3091.XP_022320637%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/EKC19578%2E1.for.273-3082.0.fasta -t /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75429.273-3082.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75429.273-3082.EKC19578%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/EKC36125%2E1.for.8304-9385.0.fasta -t /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75429.8304-9385.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75429.8304-9385.EKC36125%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/EKC29758%2E1.for.8304-9346.0.fasta -t /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75429.8304-9346.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75429.8304-9346.EKC29758%2E1.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:2 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:2 now processing 0 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:1 now processing 0 ...processing 0 of 2 ...processing 1 of 2 flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig75430 Length: 1720 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/7E/10/Contig75430//theVoid.Contig75430/0/Contig75430.0.all.rb -species all -dir /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/7E/10/Contig75430//theVoid.Contig75430/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75430.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/7E/10/Contig75430//theVoid.Contig75430/0/Contig75430.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75430.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/7E/10/Contig75430//theVoid.Contig75430/0/Contig75430.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75430.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/7E/10/Contig75430//theVoid.Contig75430/0/Contig75430.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75430.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/7E/10/Contig75430//theVoid.Contig75430/0/Contig75430.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75430.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/7E/10/Contig75430//theVoid.Contig75430/0/Contig75430.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75430.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/7E/10/Contig75430//theVoid.Contig75430/0/Contig75430.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75430.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/7E/10/Contig75430//theVoid.Contig75430/0/Contig75430.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75430.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/7E/10/Contig75430//theVoid.Contig75430/0/Contig75430.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75430.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/7E/10/Contig75430//theVoid.Contig75430/0/Contig75430.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75430.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/7E/10/Contig75430//theVoid.Contig75430/0/Contig75430.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75430.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/7E/10/Contig75430//theVoid.Contig75430/0/Contig75430.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:11 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75430.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/7E/10/Contig75430//theVoid.Contig75430/0/Contig75430.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:8 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75430.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/7E/10/Contig75430//theVoid.Contig75430/0/Contig75430.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:8 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75430.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/7E/10/Contig75430//theVoid.Contig75430/0/Contig75430.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:9 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75430.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/7E/10/Contig75430//theVoid.Contig75430/0/Contig75430.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:5 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75430.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/7E/10/Contig75430//theVoid.Contig75430/0/Contig75430.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:9 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75430.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/7E/10/Contig75430//theVoid.Contig75430/0/Contig75430.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:9 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75430.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/7E/10/Contig75430//theVoid.Contig75430/0/Contig75430.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:10 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75430.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/7E/10/Contig75430//theVoid.Contig75430/0/Contig75430.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:12 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75430.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/7E/10/Contig75430//theVoid.Contig75430/0/Contig75430.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:12 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig75431 Length: 5578 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/D7/18/Contig75431//theVoid.Contig75431/0/Contig75431.0.all.rb -species all -dir /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/D7/18/Contig75431//theVoid.Contig75431/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75431.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/D7/18/Contig75431//theVoid.Contig75431/0/Contig75431.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75431.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/D7/18/Contig75431//theVoid.Contig75431/0/Contig75431.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75431.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/D7/18/Contig75431//theVoid.Contig75431/0/Contig75431.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75431.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/D7/18/Contig75431//theVoid.Contig75431/0/Contig75431.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75431.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/D7/18/Contig75431//theVoid.Contig75431/0/Contig75431.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75431.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/D7/18/Contig75431//theVoid.Contig75431/0/Contig75431.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75431.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/D7/18/Contig75431//theVoid.Contig75431/0/Contig75431.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75431.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/D7/18/Contig75431//theVoid.Contig75431/0/Contig75431.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75431.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/D7/18/Contig75431//theVoid.Contig75431/0/Contig75431.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75431.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/D7/18/Contig75431//theVoid.Contig75431/0/Contig75431.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:4 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75431.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/D7/18/Contig75431//theVoid.Contig75431/0/Contig75431.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75431.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/D7/18/Contig75431//theVoid.Contig75431/0/Contig75431.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75431.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/D7/18/Contig75431//theVoid.Contig75431/0/Contig75431.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75431.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/D7/18/Contig75431//theVoid.Contig75431/0/Contig75431.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75431.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/D7/18/Contig75431//theVoid.Contig75431/0/Contig75431.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75431.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/D7/18/Contig75431//theVoid.Contig75431/0/Contig75431.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75431.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/D7/18/Contig75431//theVoid.Contig75431/0/Contig75431.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75431.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/D7/18/Contig75431//theVoid.Contig75431/0/Contig75431.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75431.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/D7/18/Contig75431//theVoid.Contig75431/0/Contig75431.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75431.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/D7/18/Contig75431//theVoid.Contig75431/0/Contig75431.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig75432 Length: 1827 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/EC/A0/Contig75432//theVoid.Contig75432/0/Contig75432.0.all.rb -species all -dir /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/EC/A0/Contig75432//theVoid.Contig75432/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75432.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/EC/A0/Contig75432//theVoid.Contig75432/0/Contig75432.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75432.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/EC/A0/Contig75432//theVoid.Contig75432/0/Contig75432.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75432.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/EC/A0/Contig75432//theVoid.Contig75432/0/Contig75432.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75432.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/EC/A0/Contig75432//theVoid.Contig75432/0/Contig75432.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75432.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/EC/A0/Contig75432//theVoid.Contig75432/0/Contig75432.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75432.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/EC/A0/Contig75432//theVoid.Contig75432/0/Contig75432.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75432.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/EC/A0/Contig75432//theVoid.Contig75432/0/Contig75432.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75432.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/EC/A0/Contig75432//theVoid.Contig75432/0/Contig75432.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75432.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/EC/A0/Contig75432//theVoid.Contig75432/0/Contig75432.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75432.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/EC/A0/Contig75432//theVoid.Contig75432/0/Contig75432.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75432.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/EC/A0/Contig75432//theVoid.Contig75432/0/Contig75432.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75432.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/EC/A0/Contig75432//theVoid.Contig75432/0/Contig75432.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75432.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/EC/A0/Contig75432//theVoid.Contig75432/0/Contig75432.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75432.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/EC/A0/Contig75432//theVoid.Contig75432/0/Contig75432.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75432.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/EC/A0/Contig75432//theVoid.Contig75432/0/Contig75432.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75432.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/EC/A0/Contig75432//theVoid.Contig75432/0/Contig75432.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75432.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/EC/A0/Contig75432//theVoid.Contig75432/0/Contig75432.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75432.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/EC/A0/Contig75432//theVoid.Contig75432/0/Contig75432.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75432.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/EC/A0/Contig75432//theVoid.Contig75432/0/Contig75432.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75432.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/EC/A0/Contig75432//theVoid.Contig75432/0/Contig75432.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig75433 Length: 4329 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/23/66/Contig75433//theVoid.Contig75433/0/Contig75433.0.all.rb -species all -dir /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/23/66/Contig75433//theVoid.Contig75433/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75433.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/23/66/Contig75433//theVoid.Contig75433/0/Contig75433.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75433.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/23/66/Contig75433//theVoid.Contig75433/0/Contig75433.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75433.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/23/66/Contig75433//theVoid.Contig75433/0/Contig75433.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75433.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/23/66/Contig75433//theVoid.Contig75433/0/Contig75433.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75433.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/23/66/Contig75433//theVoid.Contig75433/0/Contig75433.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75433.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/23/66/Contig75433//theVoid.Contig75433/0/Contig75433.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75433.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/23/66/Contig75433//theVoid.Contig75433/0/Contig75433.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75433.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/23/66/Contig75433//theVoid.Contig75433/0/Contig75433.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75433.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/23/66/Contig75433//theVoid.Contig75433/0/Contig75433.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75433.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/23/66/Contig75433//theVoid.Contig75433/0/Contig75433.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75433.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/23/66/Contig75433//theVoid.Contig75433/0/Contig75433.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75433.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/23/66/Contig75433//theVoid.Contig75433/0/Contig75433.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75433.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/23/66/Contig75433//theVoid.Contig75433/0/Contig75433.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75433.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/23/66/Contig75433//theVoid.Contig75433/0/Contig75433.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75433.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/23/66/Contig75433//theVoid.Contig75433/0/Contig75433.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75433.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/23/66/Contig75433//theVoid.Contig75433/0/Contig75433.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75433.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/23/66/Contig75433//theVoid.Contig75433/0/Contig75433.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75433.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/23/66/Contig75433//theVoid.Contig75433/0/Contig75433.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75433.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/23/66/Contig75433//theVoid.Contig75433/0/Contig75433.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.6/cctools-temp-t.6.bAxoqp/maker_u6bMC4/0/Contig75433.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/23/66/Contig75433//theVoid.Contig75433/0/Contig75433.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output Maker is now finished!!! Start_time: 1533652772 End_time: 1533653115 Elapsed: 343 ================================= Argument "2.53_01" isn't numeric in numeric ge (>=) at /usr/local/lib/x86_64-linux-gnu/perl/5.22.1/forks.pm line 1570. Unknown option: debug_size_limit STATUS: Parsing control files... STATUS: Processing and indexing input FASTA files... STATUS: Setting up database for any GFF3 input... A data structure will be created for you at: /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore To access files for individual sequences use the datastore index: /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_master_datastore_index.log STATUS: Now running MAKER... examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig92905 Length: 1335 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/08/CA/Contig92905//theVoid.Contig92905/0/Contig92905.0.all.rb -species all -dir /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/08/CA/Contig92905//theVoid.Contig92905/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92905.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/08/CA/Contig92905//theVoid.Contig92905/0/Contig92905.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92905.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/08/CA/Contig92905//theVoid.Contig92905/0/Contig92905.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92905.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/08/CA/Contig92905//theVoid.Contig92905/0/Contig92905.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92905.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/08/CA/Contig92905//theVoid.Contig92905/0/Contig92905.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92905.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/08/CA/Contig92905//theVoid.Contig92905/0/Contig92905.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92905.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/08/CA/Contig92905//theVoid.Contig92905/0/Contig92905.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92905.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/08/CA/Contig92905//theVoid.Contig92905/0/Contig92905.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92905.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/08/CA/Contig92905//theVoid.Contig92905/0/Contig92905.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92905.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/08/CA/Contig92905//theVoid.Contig92905/0/Contig92905.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92905.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/08/CA/Contig92905//theVoid.Contig92905/0/Contig92905.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports flattening EST clusters doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92905.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/08/CA/Contig92905//theVoid.Contig92905/0/Contig92905.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92905.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/08/CA/Contig92905//theVoid.Contig92905/0/Contig92905.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92905.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/08/CA/Contig92905//theVoid.Contig92905/0/Contig92905.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92905.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/08/CA/Contig92905//theVoid.Contig92905/0/Contig92905.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92905.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/08/CA/Contig92905//theVoid.Contig92905/0/Contig92905.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92905.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/08/CA/Contig92905//theVoid.Contig92905/0/Contig92905.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92905.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/08/CA/Contig92905//theVoid.Contig92905/0/Contig92905.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92905.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/08/CA/Contig92905//theVoid.Contig92905/0/Contig92905.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92905.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/08/CA/Contig92905//theVoid.Contig92905/0/Contig92905.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92905.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/08/CA/Contig92905//theVoid.Contig92905/0/Contig92905.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig92906 Length: 1722 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/CF/65/Contig92906//theVoid.Contig92906/0/Contig92906.0.all.rb -species all -dir /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/CF/65/Contig92906//theVoid.Contig92906/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92906.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/CF/65/Contig92906//theVoid.Contig92906/0/Contig92906.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92906.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/CF/65/Contig92906//theVoid.Contig92906/0/Contig92906.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92906.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/CF/65/Contig92906//theVoid.Contig92906/0/Contig92906.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92906.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/CF/65/Contig92906//theVoid.Contig92906/0/Contig92906.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92906.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/CF/65/Contig92906//theVoid.Contig92906/0/Contig92906.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92906.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/CF/65/Contig92906//theVoid.Contig92906/0/Contig92906.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92906.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/CF/65/Contig92906//theVoid.Contig92906/0/Contig92906.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92906.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/CF/65/Contig92906//theVoid.Contig92906/0/Contig92906.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92906.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/CF/65/Contig92906//theVoid.Contig92906/0/Contig92906.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92906.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/CF/65/Contig92906//theVoid.Contig92906/0/Contig92906.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92906.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/CF/65/Contig92906//theVoid.Contig92906/0/Contig92906.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92906.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/CF/65/Contig92906//theVoid.Contig92906/0/Contig92906.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92906.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/CF/65/Contig92906//theVoid.Contig92906/0/Contig92906.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92906.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/CF/65/Contig92906//theVoid.Contig92906/0/Contig92906.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92906.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/CF/65/Contig92906//theVoid.Contig92906/0/Contig92906.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92906.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/CF/65/Contig92906//theVoid.Contig92906/0/Contig92906.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92906.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/CF/65/Contig92906//theVoid.Contig92906/0/Contig92906.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92906.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/CF/65/Contig92906//theVoid.Contig92906/0/Contig92906.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92906.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/CF/65/Contig92906//theVoid.Contig92906/0/Contig92906.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92906.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/CF/65/Contig92906//theVoid.Contig92906/0/Contig92906.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig92907 Length: 1368 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/6E/08/Contig92907//theVoid.Contig92907/0/Contig92907.0.all.rb -species all -dir /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/6E/08/Contig92907//theVoid.Contig92907/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92907.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/6E/08/Contig92907//theVoid.Contig92907/0/Contig92907.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92907.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/6E/08/Contig92907//theVoid.Contig92907/0/Contig92907.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92907.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/6E/08/Contig92907//theVoid.Contig92907/0/Contig92907.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92907.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/6E/08/Contig92907//theVoid.Contig92907/0/Contig92907.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92907.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/6E/08/Contig92907//theVoid.Contig92907/0/Contig92907.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92907.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/6E/08/Contig92907//theVoid.Contig92907/0/Contig92907.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92907.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/6E/08/Contig92907//theVoid.Contig92907/0/Contig92907.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92907.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/6E/08/Contig92907//theVoid.Contig92907/0/Contig92907.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92907.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/6E/08/Contig92907//theVoid.Contig92907/0/Contig92907.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92907.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/6E/08/Contig92907//theVoid.Contig92907/0/Contig92907.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/comp40664_c1_seq5.for.430-1368.0.fasta -t /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92907.430-1368.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92907.430-1368.comp40664_c1_seq5.e.exonerate #-------------------------------# cleaning blastn... flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92907.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/6E/08/Contig92907//theVoid.Contig92907/0/Contig92907.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92907.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/6E/08/Contig92907//theVoid.Contig92907/0/Contig92907.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92907.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/6E/08/Contig92907//theVoid.Contig92907/0/Contig92907.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92907.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/6E/08/Contig92907//theVoid.Contig92907/0/Contig92907.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92907.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/6E/08/Contig92907//theVoid.Contig92907/0/Contig92907.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92907.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/6E/08/Contig92907//theVoid.Contig92907/0/Contig92907.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92907.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/6E/08/Contig92907//theVoid.Contig92907/0/Contig92907.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92907.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/6E/08/Contig92907//theVoid.Contig92907/0/Contig92907.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92907.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/6E/08/Contig92907//theVoid.Contig92907/0/Contig92907.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92907.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/6E/08/Contig92907//theVoid.Contig92907/0/Contig92907.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig92908 Length: 2397 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/00/57/Contig92908//theVoid.Contig92908/0/Contig92908.0.all.rb -species all -dir /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/00/57/Contig92908//theVoid.Contig92908/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92908.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/00/57/Contig92908//theVoid.Contig92908/0/Contig92908.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92908.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/00/57/Contig92908//theVoid.Contig92908/0/Contig92908.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92908.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/00/57/Contig92908//theVoid.Contig92908/0/Contig92908.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92908.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/00/57/Contig92908//theVoid.Contig92908/0/Contig92908.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92908.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/00/57/Contig92908//theVoid.Contig92908/0/Contig92908.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92908.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/00/57/Contig92908//theVoid.Contig92908/0/Contig92908.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92908.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/00/57/Contig92908//theVoid.Contig92908/0/Contig92908.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92908.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/00/57/Contig92908//theVoid.Contig92908/0/Contig92908.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92908.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/00/57/Contig92908//theVoid.Contig92908/0/Contig92908.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92908.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/00/57/Contig92908//theVoid.Contig92908/0/Contig92908.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92908.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/00/57/Contig92908//theVoid.Contig92908/0/Contig92908.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92908.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/00/57/Contig92908//theVoid.Contig92908/0/Contig92908.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92908.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/00/57/Contig92908//theVoid.Contig92908/0/Contig92908.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92908.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/00/57/Contig92908//theVoid.Contig92908/0/Contig92908.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92908.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/00/57/Contig92908//theVoid.Contig92908/0/Contig92908.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92908.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/00/57/Contig92908//theVoid.Contig92908/0/Contig92908.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92908.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/00/57/Contig92908//theVoid.Contig92908/0/Contig92908.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92908.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/00/57/Contig92908//theVoid.Contig92908/0/Contig92908.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92908.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/00/57/Contig92908//theVoid.Contig92908/0/Contig92908.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92908.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/00/57/Contig92908//theVoid.Contig92908/0/Contig92908.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig92909 Length: 6855 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/C5/70/Contig92909//theVoid.Contig92909/0/Contig92909.0.all.rb -species all -dir /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/C5/70/Contig92909//theVoid.Contig92909/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92909.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/C5/70/Contig92909//theVoid.Contig92909/0/Contig92909.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92909.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/C5/70/Contig92909//theVoid.Contig92909/0/Contig92909.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92909.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/C5/70/Contig92909//theVoid.Contig92909/0/Contig92909.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92909.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/C5/70/Contig92909//theVoid.Contig92909/0/Contig92909.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92909.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/C5/70/Contig92909//theVoid.Contig92909/0/Contig92909.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92909.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/C5/70/Contig92909//theVoid.Contig92909/0/Contig92909.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92909.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/C5/70/Contig92909//theVoid.Contig92909/0/Contig92909.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92909.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/C5/70/Contig92909//theVoid.Contig92909/0/Contig92909.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92909.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/C5/70/Contig92909//theVoid.Contig92909/0/Contig92909.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92909.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/C5/70/Contig92909//theVoid.Contig92909/0/Contig92909.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/comp38447_c0_seq1.for.1233-5490.0.fasta -t /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92909.1233-5490.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92909.1233-5490.comp38447_c0_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/comp43641_c1_seq6.for.5236-6855.0.fasta -t /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92909.5236-6855.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92909.5236-6855.comp43641_c1_seq6.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/comp43641_c1_seq2.for.5270-6855.0.fasta -t /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92909.5270-6855.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92909.5270-6855.comp43641_c1_seq2.e.exonerate #-------------------------------# cleaning blastn... cleaning clusters.... total clusters:2 now processing 0 total clusters:2 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92909.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/C5/70/Contig92909//theVoid.Contig92909/0/Contig92909.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92909.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/C5/70/Contig92909//theVoid.Contig92909/0/Contig92909.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92909.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/C5/70/Contig92909//theVoid.Contig92909/0/Contig92909.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92909.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/C5/70/Contig92909//theVoid.Contig92909/0/Contig92909.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92909.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/C5/70/Contig92909//theVoid.Contig92909/0/Contig92909.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92909.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/C5/70/Contig92909//theVoid.Contig92909/0/Contig92909.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92909.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/C5/70/Contig92909//theVoid.Contig92909/0/Contig92909.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92909.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/C5/70/Contig92909//theVoid.Contig92909/0/Contig92909.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92909.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/C5/70/Contig92909//theVoid.Contig92909/0/Contig92909.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92909.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/C5/70/Contig92909//theVoid.Contig92909/0/Contig92909.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/EKC28272%2E1.for.4473-5488.0.fasta -t /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92909.4473-5488.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92909.4473-5488.EKC28272%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/EKC31447%2E1.for.2051-5488.0.fasta -t /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92909.2051-5488.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92909.2051-5488.EKC31447%2E1.p.exonerate #-------------------------------# cleaning blastx... cleaning clusters.... total clusters:1 now processing 0 cleaning clusters.... total clusters:1 now processing 0 flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig92910 Length: 13710 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/D2/58/Contig92910//theVoid.Contig92910/0/Contig92910.0.all.rb -species all -dir /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/D2/58/Contig92910//theVoid.Contig92910/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92910.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/D2/58/Contig92910//theVoid.Contig92910/0/Contig92910.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92910.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/D2/58/Contig92910//theVoid.Contig92910/0/Contig92910.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92910.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/D2/58/Contig92910//theVoid.Contig92910/0/Contig92910.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:7 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92910.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/D2/58/Contig92910//theVoid.Contig92910/0/Contig92910.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92910.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/D2/58/Contig92910//theVoid.Contig92910/0/Contig92910.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92910.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/D2/58/Contig92910//theVoid.Contig92910/0/Contig92910.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92910.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/D2/58/Contig92910//theVoid.Contig92910/0/Contig92910.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92910.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/D2/58/Contig92910//theVoid.Contig92910/0/Contig92910.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92910.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/D2/58/Contig92910//theVoid.Contig92910/0/Contig92910.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:8 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92910.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/D2/58/Contig92910//theVoid.Contig92910/0/Contig92910.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/comp43234_c1_seq20.for.7590-8561.0.fasta -t /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92910.7590-8561.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92910.7590-8561.comp43234_c1_seq20.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/comp43234_c1_seq11.for.7590-8623.0.fasta -t /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92910.7590-8623.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92910.7590-8623.comp43234_c1_seq11.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/comp39281_c3_seq2.for.7115-8227.0.fasta -t /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92910.7115-8227.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92910.7115-8227.comp39281_c3_seq2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/comp43234_c1_seq33.for.7590-8561.0.fasta -t /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92910.7590-8561.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92910.7590-8561.comp43234_c1_seq33.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/comp10662_c0_seq1.for.5645-13710.0.fasta -t /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92910.5645-13710.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92910.5645-13710.comp10662_c0_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/comp18801_c0_seq1.for.7224-8129.0.fasta -t /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92910.7224-8129.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92910.7224-8129.comp18801_c0_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/comp39281_c3_seq6.for.7277-8227.0.fasta -t /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92910.7277-8227.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92910.7277-8227.comp39281_c3_seq6.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:3 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:3 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:3 now processing 0 ...processing 0 of 2 ...processing 1 of 2 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92910.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/D2/58/Contig92910//theVoid.Contig92910/0/Contig92910.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92910.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/D2/58/Contig92910//theVoid.Contig92910/0/Contig92910.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92910.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/D2/58/Contig92910//theVoid.Contig92910/0/Contig92910.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92910.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/D2/58/Contig92910//theVoid.Contig92910/0/Contig92910.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92910.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/D2/58/Contig92910//theVoid.Contig92910/0/Contig92910.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92910.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/D2/58/Contig92910//theVoid.Contig92910/0/Contig92910.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92910.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/D2/58/Contig92910//theVoid.Contig92910/0/Contig92910.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92910.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/D2/58/Contig92910//theVoid.Contig92910/0/Contig92910.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92910.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/D2/58/Contig92910//theVoid.Contig92910/0/Contig92910.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92910.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/D2/58/Contig92910//theVoid.Contig92910/0/Contig92910.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/XP_022302463%2E1.for.8414-13710.0.fasta -t /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92910.8414-13710.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92910.8414-13710.XP_022302463%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/XP_022314996%2E1.for.8414-13710.0.fasta -t /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92910.8414-13710.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92910.8414-13710.XP_022314996%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/EKC33706%2E1.for.8414-13710.0.fasta -t /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92910.8414-13710.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92910.8414-13710.EKC33706%2E1.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:1 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:1 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig92911 Length: 1420 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/AF/EA/Contig92911//theVoid.Contig92911/0/Contig92911.0.all.rb -species all -dir /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/AF/EA/Contig92911//theVoid.Contig92911/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92911.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/AF/EA/Contig92911//theVoid.Contig92911/0/Contig92911.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92911.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/AF/EA/Contig92911//theVoid.Contig92911/0/Contig92911.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92911.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/AF/EA/Contig92911//theVoid.Contig92911/0/Contig92911.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92911.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/AF/EA/Contig92911//theVoid.Contig92911/0/Contig92911.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92911.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/AF/EA/Contig92911//theVoid.Contig92911/0/Contig92911.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92911.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/AF/EA/Contig92911//theVoid.Contig92911/0/Contig92911.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92911.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/AF/EA/Contig92911//theVoid.Contig92911/0/Contig92911.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92911.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/AF/EA/Contig92911//theVoid.Contig92911/0/Contig92911.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92911.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/AF/EA/Contig92911//theVoid.Contig92911/0/Contig92911.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92911.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/AF/EA/Contig92911//theVoid.Contig92911/0/Contig92911.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92911.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/AF/EA/Contig92911//theVoid.Contig92911/0/Contig92911.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92911.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/AF/EA/Contig92911//theVoid.Contig92911/0/Contig92911.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92911.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/AF/EA/Contig92911//theVoid.Contig92911/0/Contig92911.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92911.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/AF/EA/Contig92911//theVoid.Contig92911/0/Contig92911.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92911.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/AF/EA/Contig92911//theVoid.Contig92911/0/Contig92911.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92911.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/AF/EA/Contig92911//theVoid.Contig92911/0/Contig92911.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92911.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/AF/EA/Contig92911//theVoid.Contig92911/0/Contig92911.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92911.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/AF/EA/Contig92911//theVoid.Contig92911/0/Contig92911.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92911.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/AF/EA/Contig92911//theVoid.Contig92911/0/Contig92911.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92911.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/AF/EA/Contig92911//theVoid.Contig92911/0/Contig92911.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig92912 Length: 1282 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/64/FB/Contig92912//theVoid.Contig92912/0/Contig92912.0.all.rb -species all -dir /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/64/FB/Contig92912//theVoid.Contig92912/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92912.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/64/FB/Contig92912//theVoid.Contig92912/0/Contig92912.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92912.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/64/FB/Contig92912//theVoid.Contig92912/0/Contig92912.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92912.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/64/FB/Contig92912//theVoid.Contig92912/0/Contig92912.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92912.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/64/FB/Contig92912//theVoid.Contig92912/0/Contig92912.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92912.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/64/FB/Contig92912//theVoid.Contig92912/0/Contig92912.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92912.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/64/FB/Contig92912//theVoid.Contig92912/0/Contig92912.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92912.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/64/FB/Contig92912//theVoid.Contig92912/0/Contig92912.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92912.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/64/FB/Contig92912//theVoid.Contig92912/0/Contig92912.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92912.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/64/FB/Contig92912//theVoid.Contig92912/0/Contig92912.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92912.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/64/FB/Contig92912//theVoid.Contig92912/0/Contig92912.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92912.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/64/FB/Contig92912//theVoid.Contig92912/0/Contig92912.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92912.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/64/FB/Contig92912//theVoid.Contig92912/0/Contig92912.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92912.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/64/FB/Contig92912//theVoid.Contig92912/0/Contig92912.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92912.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/64/FB/Contig92912//theVoid.Contig92912/0/Contig92912.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92912.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/64/FB/Contig92912//theVoid.Contig92912/0/Contig92912.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92912.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/64/FB/Contig92912//theVoid.Contig92912/0/Contig92912.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92912.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/64/FB/Contig92912//theVoid.Contig92912/0/Contig92912.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92912.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/64/FB/Contig92912//theVoid.Contig92912/0/Contig92912.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92912.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/64/FB/Contig92912//theVoid.Contig92912/0/Contig92912.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92912.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/64/FB/Contig92912//theVoid.Contig92912/0/Contig92912.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig92913 Length: 12226 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/3C/C2/Contig92913//theVoid.Contig92913/0/Contig92913.0.all.rb -species all -dir /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/3C/C2/Contig92913//theVoid.Contig92913/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92913.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/3C/C2/Contig92913//theVoid.Contig92913/0/Contig92913.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92913.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/3C/C2/Contig92913//theVoid.Contig92913/0/Contig92913.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92913.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/3C/C2/Contig92913//theVoid.Contig92913/0/Contig92913.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92913.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/3C/C2/Contig92913//theVoid.Contig92913/0/Contig92913.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92913.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/3C/C2/Contig92913//theVoid.Contig92913/0/Contig92913.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92913.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/3C/C2/Contig92913//theVoid.Contig92913/0/Contig92913.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92913.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/3C/C2/Contig92913//theVoid.Contig92913/0/Contig92913.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92913.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/3C/C2/Contig92913//theVoid.Contig92913/0/Contig92913.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92913.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/3C/C2/Contig92913//theVoid.Contig92913/0/Contig92913.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92913.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/3C/C2/Contig92913//theVoid.Contig92913/0/Contig92913.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/comp29085_c0_seq1.for.1487-4805.0.fasta -t /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92913.1487-4805.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92913.1487-4805.comp29085_c0_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/comp29085_c0_seq2.for.1487-4805.0.fasta -t /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92913.1487-4805.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92913.1487-4805.comp29085_c0_seq2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/comp11031_c0_seq1.for.7079-9798.0.fasta -t /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92913.7079-9798.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92913.7079-9798.comp11031_c0_seq1.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:2 now processing 0 total clusters:2 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92913.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/3C/C2/Contig92913//theVoid.Contig92913/0/Contig92913.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92913.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/3C/C2/Contig92913//theVoid.Contig92913/0/Contig92913.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92913.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/3C/C2/Contig92913//theVoid.Contig92913/0/Contig92913.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92913.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/3C/C2/Contig92913//theVoid.Contig92913/0/Contig92913.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92913.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/3C/C2/Contig92913//theVoid.Contig92913/0/Contig92913.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92913.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/3C/C2/Contig92913//theVoid.Contig92913/0/Contig92913.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92913.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/3C/C2/Contig92913//theVoid.Contig92913/0/Contig92913.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92913.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/3C/C2/Contig92913//theVoid.Contig92913/0/Contig92913.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92913.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/3C/C2/Contig92913//theVoid.Contig92913/0/Contig92913.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92913.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/3C/C2/Contig92913//theVoid.Contig92913/0/Contig92913.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/XP_022343789%2E1.for.1491-4543.0.fasta -t /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92913.1491-4543.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92913.1491-4543.XP_022343789%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/XP_022343681%2E1.for.7016-8580.0.fasta -t /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92913.7016-8580.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92913.7016-8580.XP_022343681%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/XP_022322342%2E1.for.4281-8160.0.fasta -t /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92913.4281-8160.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92913.4281-8160.XP_022322342%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/XP_022337573%2E1.for.4278-8139.0.fasta -t /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92913.4278-8139.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92913.4278-8139.XP_022337573%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/EKC21872%2E1.for.4323-6279.0.fasta -t /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92913.4323-6279.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92913.4323-6279.EKC21872%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/EKC41412%2E1.for.4242-7596.0.fasta -t /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92913.4242-7596.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92913.4242-7596.EKC41412%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/EKC32112%2E1.for.6021-7599.0.fasta -t /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92913.6021-7599.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92913.6021-7599.EKC32112%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/EKC21873%2E1.for.4323-6279.0.fasta -t /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92913.4323-6279.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92913.4323-6279.EKC21873%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/EKC36505%2E1.for.6027-7000.0.fasta -t /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92913.6027-7000.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92913.6027-7000.EKC36505%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/XP_022343679%2E1.for.4221-8580.0.fasta -t /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92913.4221-8580.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92913.4221-8580.XP_022343679%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/XP_022344019%2E1.for.4278-8139.0.fasta -t /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92913.4278-8139.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92913.4278-8139.XP_022344019%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/EKC38867%2E1.for.4278-8139.0.fasta -t /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92913.4278-8139.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92913.4278-8139.EKC38867%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/XP_022343680%2E1.for.4221-6659.0.fasta -t /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92913.4221-6659.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92913.4221-6659.XP_022343680%2E1.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:2 now processing 0 total clusters:2 now processing 0 ...processing 0 of 11 ...processing 1 of 11 ...processing 2 of 11 ...processing 3 of 11 ...processing 4 of 11 ...processing 5 of 11 ...processing 6 of 11 ...processing 7 of 11 ...processing 8 of 11 ...processing 9 of 11 ...processing 10 of 11 in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:2 now processing 0 total clusters:2 now processing 0 ...processing 0 of 8 ...processing 1 of 8 ...processing 2 of 8 ...processing 3 of 8 ...processing 4 of 8 ...processing 5 of 8 ...processing 6 of 8 ...processing 7 of 8 flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig92914 Length: 11948 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/A6/BB/Contig92914//theVoid.Contig92914/0/Contig92914.0.all.rb -species all -dir /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/A6/BB/Contig92914//theVoid.Contig92914/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92914.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/A6/BB/Contig92914//theVoid.Contig92914/0/Contig92914.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92914.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/A6/BB/Contig92914//theVoid.Contig92914/0/Contig92914.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92914.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/A6/BB/Contig92914//theVoid.Contig92914/0/Contig92914.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92914.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/A6/BB/Contig92914//theVoid.Contig92914/0/Contig92914.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92914.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/A6/BB/Contig92914//theVoid.Contig92914/0/Contig92914.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92914.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/A6/BB/Contig92914//theVoid.Contig92914/0/Contig92914.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92914.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/A6/BB/Contig92914//theVoid.Contig92914/0/Contig92914.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92914.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/A6/BB/Contig92914//theVoid.Contig92914/0/Contig92914.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92914.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/A6/BB/Contig92914//theVoid.Contig92914/0/Contig92914.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92914.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/A6/BB/Contig92914//theVoid.Contig92914/0/Contig92914.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92914.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/A6/BB/Contig92914//theVoid.Contig92914/0/Contig92914.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92914.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/A6/BB/Contig92914//theVoid.Contig92914/0/Contig92914.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92914.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/A6/BB/Contig92914//theVoid.Contig92914/0/Contig92914.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92914.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/A6/BB/Contig92914//theVoid.Contig92914/0/Contig92914.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92914.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/A6/BB/Contig92914//theVoid.Contig92914/0/Contig92914.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92914.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/A6/BB/Contig92914//theVoid.Contig92914/0/Contig92914.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92914.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/A6/BB/Contig92914//theVoid.Contig92914/0/Contig92914.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92914.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/A6/BB/Contig92914//theVoid.Contig92914/0/Contig92914.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92914.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/A6/BB/Contig92914//theVoid.Contig92914/0/Contig92914.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-1488/t.8/cctools-temp-t.8.1p1d7P/maker_b9eY9N/0/Contig92914.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-1488/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/A6/BB/Contig92914//theVoid.Contig92914/0/Contig92914.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output Maker is now finished!!! Start_time: 1533652772 End_time: 1533653118 Elapsed: 346 ================================= Argument "2.53_01" isn't numeric in numeric ge (>=) at /usr/local/lib/x86_64-linux-gnu/perl/5.22.1/forks.pm line 1570. Unknown option: debug_size_limit STATUS: Parsing control files... STATUS: Processing and indexing input FASTA files... STATUS: Setting up database for any GFF3 input... A data structure will be created for you at: /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore To access files for individual sequences use the datastore index: /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_master_datastore_index.log STATUS: Now running MAKER... examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig125039 Length: 2003 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/E2/F5/Contig125039//theVoid.Contig125039/0/Contig125039.0.all.rb -species all -dir /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/E2/F5/Contig125039//theVoid.Contig125039/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125039.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/E2/F5/Contig125039//theVoid.Contig125039/0/Contig125039.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125039.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/E2/F5/Contig125039//theVoid.Contig125039/0/Contig125039.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125039.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/E2/F5/Contig125039//theVoid.Contig125039/0/Contig125039.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125039.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/E2/F5/Contig125039//theVoid.Contig125039/0/Contig125039.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125039.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/E2/F5/Contig125039//theVoid.Contig125039/0/Contig125039.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125039.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/E2/F5/Contig125039//theVoid.Contig125039/0/Contig125039.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125039.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/E2/F5/Contig125039//theVoid.Contig125039/0/Contig125039.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125039.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/E2/F5/Contig125039//theVoid.Contig125039/0/Contig125039.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125039.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/E2/F5/Contig125039//theVoid.Contig125039/0/Contig125039.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125039.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/E2/F5/Contig125039//theVoid.Contig125039/0/Contig125039.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports flattening EST clusters doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125039.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/E2/F5/Contig125039//theVoid.Contig125039/0/Contig125039.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125039.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/E2/F5/Contig125039//theVoid.Contig125039/0/Contig125039.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125039.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/E2/F5/Contig125039//theVoid.Contig125039/0/Contig125039.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125039.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/E2/F5/Contig125039//theVoid.Contig125039/0/Contig125039.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125039.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/E2/F5/Contig125039//theVoid.Contig125039/0/Contig125039.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125039.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/E2/F5/Contig125039//theVoid.Contig125039/0/Contig125039.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125039.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/E2/F5/Contig125039//theVoid.Contig125039/0/Contig125039.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125039.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/E2/F5/Contig125039//theVoid.Contig125039/0/Contig125039.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125039.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/E2/F5/Contig125039//theVoid.Contig125039/0/Contig125039.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125039.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/E2/F5/Contig125039//theVoid.Contig125039/0/Contig125039.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig125040 Length: 1399 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/7B/DC/Contig125040//theVoid.Contig125040/0/Contig125040.0.all.rb -species all -dir /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/7B/DC/Contig125040//theVoid.Contig125040/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125040.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/7B/DC/Contig125040//theVoid.Contig125040/0/Contig125040.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125040.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/7B/DC/Contig125040//theVoid.Contig125040/0/Contig125040.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125040.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/7B/DC/Contig125040//theVoid.Contig125040/0/Contig125040.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125040.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/7B/DC/Contig125040//theVoid.Contig125040/0/Contig125040.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125040.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/7B/DC/Contig125040//theVoid.Contig125040/0/Contig125040.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125040.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/7B/DC/Contig125040//theVoid.Contig125040/0/Contig125040.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125040.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/7B/DC/Contig125040//theVoid.Contig125040/0/Contig125040.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125040.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/7B/DC/Contig125040//theVoid.Contig125040/0/Contig125040.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125040.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/7B/DC/Contig125040//theVoid.Contig125040/0/Contig125040.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125040.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/7B/DC/Contig125040//theVoid.Contig125040/0/Contig125040.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/comp33799_c0_seq1.for.469-1399.0.fasta -t /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125040.469-1399.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125040.469-1399.comp33799_c0_seq1.e.exonerate #-------------------------------# cleaning blastn... cleaning clusters.... total clusters:1 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125040.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/7B/DC/Contig125040//theVoid.Contig125040/0/Contig125040.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125040.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/7B/DC/Contig125040//theVoid.Contig125040/0/Contig125040.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125040.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/7B/DC/Contig125040//theVoid.Contig125040/0/Contig125040.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125040.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/7B/DC/Contig125040//theVoid.Contig125040/0/Contig125040.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125040.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/7B/DC/Contig125040//theVoid.Contig125040/0/Contig125040.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125040.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/7B/DC/Contig125040//theVoid.Contig125040/0/Contig125040.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125040.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/7B/DC/Contig125040//theVoid.Contig125040/0/Contig125040.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125040.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/7B/DC/Contig125040//theVoid.Contig125040/0/Contig125040.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125040.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/7B/DC/Contig125040//theVoid.Contig125040/0/Contig125040.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125040.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/7B/DC/Contig125040//theVoid.Contig125040/0/Contig125040.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig125041 Length: 1474 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/C4/18/Contig125041//theVoid.Contig125041/0/Contig125041.0.all.rb -species all -dir /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/C4/18/Contig125041//theVoid.Contig125041/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125041.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/C4/18/Contig125041//theVoid.Contig125041/0/Contig125041.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125041.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/C4/18/Contig125041//theVoid.Contig125041/0/Contig125041.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125041.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/C4/18/Contig125041//theVoid.Contig125041/0/Contig125041.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125041.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/C4/18/Contig125041//theVoid.Contig125041/0/Contig125041.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125041.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/C4/18/Contig125041//theVoid.Contig125041/0/Contig125041.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125041.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/C4/18/Contig125041//theVoid.Contig125041/0/Contig125041.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125041.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/C4/18/Contig125041//theVoid.Contig125041/0/Contig125041.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125041.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/C4/18/Contig125041//theVoid.Contig125041/0/Contig125041.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125041.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/C4/18/Contig125041//theVoid.Contig125041/0/Contig125041.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125041.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/C4/18/Contig125041//theVoid.Contig125041/0/Contig125041.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125041.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/C4/18/Contig125041//theVoid.Contig125041/0/Contig125041.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125041.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/C4/18/Contig125041//theVoid.Contig125041/0/Contig125041.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125041.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/C4/18/Contig125041//theVoid.Contig125041/0/Contig125041.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125041.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/C4/18/Contig125041//theVoid.Contig125041/0/Contig125041.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125041.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/C4/18/Contig125041//theVoid.Contig125041/0/Contig125041.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125041.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/C4/18/Contig125041//theVoid.Contig125041/0/Contig125041.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125041.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/C4/18/Contig125041//theVoid.Contig125041/0/Contig125041.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125041.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/C4/18/Contig125041//theVoid.Contig125041/0/Contig125041.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125041.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/C4/18/Contig125041//theVoid.Contig125041/0/Contig125041.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125041.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/C4/18/Contig125041//theVoid.Contig125041/0/Contig125041.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/XP_022338902%2E1.for.1-914.0.fasta -t /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125041.1-914.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125041.1-914.XP_022338902%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/EKC26724%2E1.for.1-947.0.fasta -t /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125041.1-947.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125041.1-947.EKC26724%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/EKC32995%2E1.for.1-947.0.fasta -t /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125041.1-947.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125041.1-947.EKC32995%2E1.p.exonerate #-------------------------------# cleaning blastx... flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig125042 Length: 1523 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/06/04/Contig125042//theVoid.Contig125042/0/Contig125042.0.all.rb -species all -dir /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/06/04/Contig125042//theVoid.Contig125042/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125042.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/06/04/Contig125042//theVoid.Contig125042/0/Contig125042.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125042.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/06/04/Contig125042//theVoid.Contig125042/0/Contig125042.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125042.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/06/04/Contig125042//theVoid.Contig125042/0/Contig125042.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125042.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/06/04/Contig125042//theVoid.Contig125042/0/Contig125042.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125042.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/06/04/Contig125042//theVoid.Contig125042/0/Contig125042.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125042.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/06/04/Contig125042//theVoid.Contig125042/0/Contig125042.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125042.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/06/04/Contig125042//theVoid.Contig125042/0/Contig125042.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125042.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/06/04/Contig125042//theVoid.Contig125042/0/Contig125042.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125042.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/06/04/Contig125042//theVoid.Contig125042/0/Contig125042.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125042.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/06/04/Contig125042//theVoid.Contig125042/0/Contig125042.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/comp18523_c0_seq1.for.1-636.0.fasta -t /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125042.1-636.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125042.1-636.comp18523_c0_seq1.e.exonerate #-------------------------------# cleaning blastn... cleaning clusters.... total clusters:1 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125042.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/06/04/Contig125042//theVoid.Contig125042/0/Contig125042.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125042.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/06/04/Contig125042//theVoid.Contig125042/0/Contig125042.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125042.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/06/04/Contig125042//theVoid.Contig125042/0/Contig125042.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125042.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/06/04/Contig125042//theVoid.Contig125042/0/Contig125042.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125042.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/06/04/Contig125042//theVoid.Contig125042/0/Contig125042.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125042.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/06/04/Contig125042//theVoid.Contig125042/0/Contig125042.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125042.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/06/04/Contig125042//theVoid.Contig125042/0/Contig125042.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125042.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/06/04/Contig125042//theVoid.Contig125042/0/Contig125042.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125042.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/06/04/Contig125042//theVoid.Contig125042/0/Contig125042.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125042.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/06/04/Contig125042//theVoid.Contig125042/0/Contig125042.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig125043 Length: 1428 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/72/78/Contig125043//theVoid.Contig125043/0/Contig125043.0.all.rb -species all -dir /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/72/78/Contig125043//theVoid.Contig125043/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125043.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/72/78/Contig125043//theVoid.Contig125043/0/Contig125043.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125043.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/72/78/Contig125043//theVoid.Contig125043/0/Contig125043.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125043.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/72/78/Contig125043//theVoid.Contig125043/0/Contig125043.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125043.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/72/78/Contig125043//theVoid.Contig125043/0/Contig125043.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125043.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/72/78/Contig125043//theVoid.Contig125043/0/Contig125043.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125043.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/72/78/Contig125043//theVoid.Contig125043/0/Contig125043.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125043.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/72/78/Contig125043//theVoid.Contig125043/0/Contig125043.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125043.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/72/78/Contig125043//theVoid.Contig125043/0/Contig125043.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125043.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/72/78/Contig125043//theVoid.Contig125043/0/Contig125043.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125043.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/72/78/Contig125043//theVoid.Contig125043/0/Contig125043.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125043.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/72/78/Contig125043//theVoid.Contig125043/0/Contig125043.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125043.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/72/78/Contig125043//theVoid.Contig125043/0/Contig125043.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125043.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/72/78/Contig125043//theVoid.Contig125043/0/Contig125043.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125043.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/72/78/Contig125043//theVoid.Contig125043/0/Contig125043.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125043.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/72/78/Contig125043//theVoid.Contig125043/0/Contig125043.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125043.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/72/78/Contig125043//theVoid.Contig125043/0/Contig125043.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125043.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/72/78/Contig125043//theVoid.Contig125043/0/Contig125043.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125043.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/72/78/Contig125043//theVoid.Contig125043/0/Contig125043.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125043.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/72/78/Contig125043//theVoid.Contig125043/0/Contig125043.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125043.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/72/78/Contig125043//theVoid.Contig125043/0/Contig125043.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:3 hits collecting blastx reports polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/XP_022298726%2E1.for.185-1184.0.fasta -t /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125043.185-1184.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125043.185-1184.XP_022298726%2E1.p.exonerate #-------------------------------# cleaning blastx... flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig125044 Length: 1159 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/69/B0/Contig125044//theVoid.Contig125044/0/Contig125044.0.all.rb -species all -dir /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/69/B0/Contig125044//theVoid.Contig125044/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125044.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/69/B0/Contig125044//theVoid.Contig125044/0/Contig125044.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125044.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/69/B0/Contig125044//theVoid.Contig125044/0/Contig125044.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125044.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/69/B0/Contig125044//theVoid.Contig125044/0/Contig125044.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125044.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/69/B0/Contig125044//theVoid.Contig125044/0/Contig125044.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125044.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/69/B0/Contig125044//theVoid.Contig125044/0/Contig125044.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125044.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/69/B0/Contig125044//theVoid.Contig125044/0/Contig125044.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125044.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/69/B0/Contig125044//theVoid.Contig125044/0/Contig125044.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125044.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/69/B0/Contig125044//theVoid.Contig125044/0/Contig125044.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125044.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/69/B0/Contig125044//theVoid.Contig125044/0/Contig125044.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125044.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/69/B0/Contig125044//theVoid.Contig125044/0/Contig125044.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125044.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/69/B0/Contig125044//theVoid.Contig125044/0/Contig125044.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125044.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/69/B0/Contig125044//theVoid.Contig125044/0/Contig125044.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125044.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/69/B0/Contig125044//theVoid.Contig125044/0/Contig125044.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125044.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/69/B0/Contig125044//theVoid.Contig125044/0/Contig125044.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125044.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/69/B0/Contig125044//theVoid.Contig125044/0/Contig125044.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125044.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/69/B0/Contig125044//theVoid.Contig125044/0/Contig125044.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125044.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/69/B0/Contig125044//theVoid.Contig125044/0/Contig125044.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125044.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/69/B0/Contig125044//theVoid.Contig125044/0/Contig125044.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125044.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/69/B0/Contig125044//theVoid.Contig125044/0/Contig125044.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125044.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/69/B0/Contig125044//theVoid.Contig125044/0/Contig125044.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig125045 Length: 1516 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/AD/CC/Contig125045//theVoid.Contig125045/0/Contig125045.0.all.rb -species all -dir /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/AD/CC/Contig125045//theVoid.Contig125045/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125045.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/AD/CC/Contig125045//theVoid.Contig125045/0/Contig125045.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:8 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125045.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/AD/CC/Contig125045//theVoid.Contig125045/0/Contig125045.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:9 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125045.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/AD/CC/Contig125045//theVoid.Contig125045/0/Contig125045.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:9 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125045.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/AD/CC/Contig125045//theVoid.Contig125045/0/Contig125045.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:8 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125045.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/AD/CC/Contig125045//theVoid.Contig125045/0/Contig125045.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:8 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125045.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/AD/CC/Contig125045//theVoid.Contig125045/0/Contig125045.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:9 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125045.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/AD/CC/Contig125045//theVoid.Contig125045/0/Contig125045.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:9 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125045.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/AD/CC/Contig125045//theVoid.Contig125045/0/Contig125045.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:8 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125045.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/AD/CC/Contig125045//theVoid.Contig125045/0/Contig125045.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:9 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125045.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/AD/CC/Contig125045//theVoid.Contig125045/0/Contig125045.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:7 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/comp43994_c1_seq36.for.1-722.0.fasta -t /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125045.1-722.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125045.1-722.comp43994_c1_seq36.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/comp43994_c1_seq70.for.1-722.0.fasta -t /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125045.1-722.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125045.1-722.comp43994_c1_seq70.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/comp43994_c1_seq51.for.1-722.0.fasta -t /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125045.1-722.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125045.1-722.comp43994_c1_seq51.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/comp43994_c1_seq62.for.1-722.0.fasta -t /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125045.1-722.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125045.1-722.comp43994_c1_seq62.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/comp43994_c1_seq14.for.1-708.0.fasta -t /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125045.1-708.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125045.1-708.comp43994_c1_seq14.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/comp43994_c1_seq75.for.1-722.0.fasta -t /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125045.1-722.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125045.1-722.comp43994_c1_seq75.e.exonerate #-------------------------------# cleaning blastn... cleaning clusters.... total clusters:1 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125045.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/AD/CC/Contig125045//theVoid.Contig125045/0/Contig125045.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125045.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/AD/CC/Contig125045//theVoid.Contig125045/0/Contig125045.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125045.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/AD/CC/Contig125045//theVoid.Contig125045/0/Contig125045.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125045.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/AD/CC/Contig125045//theVoid.Contig125045/0/Contig125045.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125045.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/AD/CC/Contig125045//theVoid.Contig125045/0/Contig125045.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125045.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/AD/CC/Contig125045//theVoid.Contig125045/0/Contig125045.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125045.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/AD/CC/Contig125045//theVoid.Contig125045/0/Contig125045.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125045.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/AD/CC/Contig125045//theVoid.Contig125045/0/Contig125045.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125045.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/AD/CC/Contig125045//theVoid.Contig125045/0/Contig125045.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125045.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/AD/CC/Contig125045//theVoid.Contig125045/0/Contig125045.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig125046 Length: 3843 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/03/BA/Contig125046//theVoid.Contig125046/0/Contig125046.0.all.rb -species all -dir /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/03/BA/Contig125046//theVoid.Contig125046/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125046.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/03/BA/Contig125046//theVoid.Contig125046/0/Contig125046.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125046.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/03/BA/Contig125046//theVoid.Contig125046/0/Contig125046.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125046.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/03/BA/Contig125046//theVoid.Contig125046/0/Contig125046.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125046.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/03/BA/Contig125046//theVoid.Contig125046/0/Contig125046.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125046.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/03/BA/Contig125046//theVoid.Contig125046/0/Contig125046.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125046.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/03/BA/Contig125046//theVoid.Contig125046/0/Contig125046.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125046.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/03/BA/Contig125046//theVoid.Contig125046/0/Contig125046.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125046.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/03/BA/Contig125046//theVoid.Contig125046/0/Contig125046.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125046.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/03/BA/Contig125046//theVoid.Contig125046/0/Contig125046.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125046.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/03/BA/Contig125046//theVoid.Contig125046/0/Contig125046.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125046.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/03/BA/Contig125046//theVoid.Contig125046/0/Contig125046.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125046.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/03/BA/Contig125046//theVoid.Contig125046/0/Contig125046.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125046.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/03/BA/Contig125046//theVoid.Contig125046/0/Contig125046.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:3 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125046.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/03/BA/Contig125046//theVoid.Contig125046/0/Contig125046.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125046.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/03/BA/Contig125046//theVoid.Contig125046/0/Contig125046.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125046.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/03/BA/Contig125046//theVoid.Contig125046/0/Contig125046.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125046.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/03/BA/Contig125046//theVoid.Contig125046/0/Contig125046.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125046.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/03/BA/Contig125046//theVoid.Contig125046/0/Contig125046.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125046.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/03/BA/Contig125046//theVoid.Contig125046/0/Contig125046.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:3 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125046.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/03/BA/Contig125046//theVoid.Contig125046/0/Contig125046.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:2 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig125047 Length: 12535 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/42/EB/Contig125047//theVoid.Contig125047/0/Contig125047.0.all.rb -species all -dir /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/42/EB/Contig125047//theVoid.Contig125047/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125047.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/42/EB/Contig125047//theVoid.Contig125047/0/Contig125047.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125047.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/42/EB/Contig125047//theVoid.Contig125047/0/Contig125047.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125047.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/42/EB/Contig125047//theVoid.Contig125047/0/Contig125047.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125047.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/42/EB/Contig125047//theVoid.Contig125047/0/Contig125047.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125047.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/42/EB/Contig125047//theVoid.Contig125047/0/Contig125047.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125047.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/42/EB/Contig125047//theVoid.Contig125047/0/Contig125047.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125047.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/42/EB/Contig125047//theVoid.Contig125047/0/Contig125047.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125047.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/42/EB/Contig125047//theVoid.Contig125047/0/Contig125047.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125047.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/42/EB/Contig125047//theVoid.Contig125047/0/Contig125047.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125047.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/42/EB/Contig125047//theVoid.Contig125047/0/Contig125047.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:3 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/comp32782_c1_seq1.for.1-776.0.fasta -t /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125047.1-776.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125047.1-776.comp32782_c1_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/comp32782_c0_seq1.for.201-1166.0.fasta -t /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125047.201-1166.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125047.201-1166.comp32782_c0_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/comp32782_c0_seq2.for.201-1272.0.fasta -t /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125047.201-1272.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125047.201-1272.comp32782_c0_seq2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/comp36361_c0_seq2.for.2481-4070.0.fasta -t /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125047.2481-4070.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125047.2481-4070.comp36361_c0_seq2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/comp35864_c0_seq8.for.3659-5553.0.fasta -t /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125047.3659-5553.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125047.3659-5553.comp35864_c0_seq8.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/comp35864_c0_seq5.for.3634-5553.0.fasta -t /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125047.3634-5553.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125047.3634-5553.comp35864_c0_seq5.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:2 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:2 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125047.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/42/EB/Contig125047//theVoid.Contig125047/0/Contig125047.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125047.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/42/EB/Contig125047//theVoid.Contig125047/0/Contig125047.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125047.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/42/EB/Contig125047//theVoid.Contig125047/0/Contig125047.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125047.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/42/EB/Contig125047//theVoid.Contig125047/0/Contig125047.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125047.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/42/EB/Contig125047//theVoid.Contig125047/0/Contig125047.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125047.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/42/EB/Contig125047//theVoid.Contig125047/0/Contig125047.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125047.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/42/EB/Contig125047//theVoid.Contig125047/0/Contig125047.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125047.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/42/EB/Contig125047//theVoid.Contig125047/0/Contig125047.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125047.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/42/EB/Contig125047//theVoid.Contig125047/0/Contig125047.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125047.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/42/EB/Contig125047//theVoid.Contig125047/0/Contig125047.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig125048 Length: 6075 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/62/EE/Contig125048//theVoid.Contig125048/0/Contig125048.0.all.rb -species all -dir /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/62/EE/Contig125048//theVoid.Contig125048/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125048.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/62/EE/Contig125048//theVoid.Contig125048/0/Contig125048.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125048.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/62/EE/Contig125048//theVoid.Contig125048/0/Contig125048.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125048.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/62/EE/Contig125048//theVoid.Contig125048/0/Contig125048.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125048.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/62/EE/Contig125048//theVoid.Contig125048/0/Contig125048.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125048.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/62/EE/Contig125048//theVoid.Contig125048/0/Contig125048.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125048.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/62/EE/Contig125048//theVoid.Contig125048/0/Contig125048.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125048.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/62/EE/Contig125048//theVoid.Contig125048/0/Contig125048.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125048.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/62/EE/Contig125048//theVoid.Contig125048/0/Contig125048.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125048.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/62/EE/Contig125048//theVoid.Contig125048/0/Contig125048.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125048.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/62/EE/Contig125048//theVoid.Contig125048/0/Contig125048.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125048.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/62/EE/Contig125048//theVoid.Contig125048/0/Contig125048.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125048.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/62/EE/Contig125048//theVoid.Contig125048/0/Contig125048.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125048.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/62/EE/Contig125048//theVoid.Contig125048/0/Contig125048.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125048.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/62/EE/Contig125048//theVoid.Contig125048/0/Contig125048.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125048.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/62/EE/Contig125048//theVoid.Contig125048/0/Contig125048.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125048.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/62/EE/Contig125048//theVoid.Contig125048/0/Contig125048.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125048.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/62/EE/Contig125048//theVoid.Contig125048/0/Contig125048.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125048.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/62/EE/Contig125048//theVoid.Contig125048/0/Contig125048.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125048.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/62/EE/Contig125048//theVoid.Contig125048/0/Contig125048.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.38/cctools-temp-t.38.WmLSMw/maker_EGdXhl/0/Contig125048.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.38/Olurida_v081.maker.output/Olurida_v081_datastore/62/EE/Contig125048//theVoid.Contig125048/0/Contig125048.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output Maker is now finished!!! Start_time: 1533652860 End_time: 1533653129 Elapsed: 269 ================================= Argument "2.53_01" isn't numeric in numeric ge (>=) at /usr/local/lib/x86_64-linux-gnu/perl/5.22.1/forks.pm line 1570. Unknown option: debug_size_limit STATUS: Parsing control files... STATUS: Processing and indexing input FASTA files... STATUS: Setting up database for any GFF3 input... A data structure will be created for you at: /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore To access files for individual sequences use the datastore index: /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_master_datastore_index.log STATUS: Now running MAKER... examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig131480 Length: 4358 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/7B/C3/Contig131480//theVoid.Contig131480/0/Contig131480.0.all.rb -species all -dir /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/7B/C3/Contig131480//theVoid.Contig131480/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131480.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/7B/C3/Contig131480//theVoid.Contig131480/0/Contig131480.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131480.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/7B/C3/Contig131480//theVoid.Contig131480/0/Contig131480.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131480.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/7B/C3/Contig131480//theVoid.Contig131480/0/Contig131480.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131480.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/7B/C3/Contig131480//theVoid.Contig131480/0/Contig131480.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131480.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/7B/C3/Contig131480//theVoid.Contig131480/0/Contig131480.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131480.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/7B/C3/Contig131480//theVoid.Contig131480/0/Contig131480.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131480.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/7B/C3/Contig131480//theVoid.Contig131480/0/Contig131480.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131480.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/7B/C3/Contig131480//theVoid.Contig131480/0/Contig131480.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131480.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/7B/C3/Contig131480//theVoid.Contig131480/0/Contig131480.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131480.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/7B/C3/Contig131480//theVoid.Contig131480/0/Contig131480.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/comp41572_c0_seq1.for.2302-3270.0.fasta -t /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131480.2302-3270.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131480.2302-3270.comp41572_c0_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/comp41572_c0_seq8.for.2302-3270.0.fasta -t /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131480.2302-3270.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131480.2302-3270.comp41572_c0_seq8.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:2 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:2 now processing 0 flattening EST clusters doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131480.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/7B/C3/Contig131480//theVoid.Contig131480/0/Contig131480.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131480.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/7B/C3/Contig131480//theVoid.Contig131480/0/Contig131480.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131480.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/7B/C3/Contig131480//theVoid.Contig131480/0/Contig131480.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131480.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/7B/C3/Contig131480//theVoid.Contig131480/0/Contig131480.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131480.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/7B/C3/Contig131480//theVoid.Contig131480/0/Contig131480.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131480.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/7B/C3/Contig131480//theVoid.Contig131480/0/Contig131480.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131480.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/7B/C3/Contig131480//theVoid.Contig131480/0/Contig131480.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131480.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/7B/C3/Contig131480//theVoid.Contig131480/0/Contig131480.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131480.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/7B/C3/Contig131480//theVoid.Contig131480/0/Contig131480.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131480.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/7B/C3/Contig131480//theVoid.Contig131480/0/Contig131480.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig131481 Length: 7000 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/A4/D9/Contig131481//theVoid.Contig131481/0/Contig131481.0.all.rb -species all -dir /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/A4/D9/Contig131481//theVoid.Contig131481/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131481.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/A4/D9/Contig131481//theVoid.Contig131481/0/Contig131481.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131481.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/A4/D9/Contig131481//theVoid.Contig131481/0/Contig131481.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131481.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/A4/D9/Contig131481//theVoid.Contig131481/0/Contig131481.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131481.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/A4/D9/Contig131481//theVoid.Contig131481/0/Contig131481.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131481.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/A4/D9/Contig131481//theVoid.Contig131481/0/Contig131481.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131481.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/A4/D9/Contig131481//theVoid.Contig131481/0/Contig131481.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131481.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/A4/D9/Contig131481//theVoid.Contig131481/0/Contig131481.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131481.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/A4/D9/Contig131481//theVoid.Contig131481/0/Contig131481.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131481.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/A4/D9/Contig131481//theVoid.Contig131481/0/Contig131481.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131481.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/A4/D9/Contig131481//theVoid.Contig131481/0/Contig131481.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:3 hits collecting blastn reports polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/comp42261_c0_seq12.for.2316-4080.0.fasta -t /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131481.2316-4080.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131481.2316-4080.comp42261_c0_seq12.e.exonerate #-------------------------------# cleaning blastn... cleaning clusters.... total clusters:1 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131481.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/A4/D9/Contig131481//theVoid.Contig131481/0/Contig131481.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131481.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/A4/D9/Contig131481//theVoid.Contig131481/0/Contig131481.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131481.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/A4/D9/Contig131481//theVoid.Contig131481/0/Contig131481.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131481.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/A4/D9/Contig131481//theVoid.Contig131481/0/Contig131481.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131481.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/A4/D9/Contig131481//theVoid.Contig131481/0/Contig131481.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131481.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/A4/D9/Contig131481//theVoid.Contig131481/0/Contig131481.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131481.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/A4/D9/Contig131481//theVoid.Contig131481/0/Contig131481.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131481.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/A4/D9/Contig131481//theVoid.Contig131481/0/Contig131481.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131481.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/A4/D9/Contig131481//theVoid.Contig131481/0/Contig131481.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131481.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/A4/D9/Contig131481//theVoid.Contig131481/0/Contig131481.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig131483 Length: 1030 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/F5/26/Contig131483//theVoid.Contig131483/0/Contig131483.0.all.rb -species all -dir /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/F5/26/Contig131483//theVoid.Contig131483/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131483.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/F5/26/Contig131483//theVoid.Contig131483/0/Contig131483.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131483.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/F5/26/Contig131483//theVoid.Contig131483/0/Contig131483.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131483.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/F5/26/Contig131483//theVoid.Contig131483/0/Contig131483.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131483.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/F5/26/Contig131483//theVoid.Contig131483/0/Contig131483.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131483.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/F5/26/Contig131483//theVoid.Contig131483/0/Contig131483.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131483.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/F5/26/Contig131483//theVoid.Contig131483/0/Contig131483.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131483.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/F5/26/Contig131483//theVoid.Contig131483/0/Contig131483.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131483.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/F5/26/Contig131483//theVoid.Contig131483/0/Contig131483.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131483.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/F5/26/Contig131483//theVoid.Contig131483/0/Contig131483.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131483.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/F5/26/Contig131483//theVoid.Contig131483/0/Contig131483.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131483.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/F5/26/Contig131483//theVoid.Contig131483/0/Contig131483.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131483.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/F5/26/Contig131483//theVoid.Contig131483/0/Contig131483.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131483.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/F5/26/Contig131483//theVoid.Contig131483/0/Contig131483.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131483.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/F5/26/Contig131483//theVoid.Contig131483/0/Contig131483.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131483.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/F5/26/Contig131483//theVoid.Contig131483/0/Contig131483.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131483.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/F5/26/Contig131483//theVoid.Contig131483/0/Contig131483.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131483.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/F5/26/Contig131483//theVoid.Contig131483/0/Contig131483.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131483.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/F5/26/Contig131483//theVoid.Contig131483/0/Contig131483.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131483.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/F5/26/Contig131483//theVoid.Contig131483/0/Contig131483.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131483.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/F5/26/Contig131483//theVoid.Contig131483/0/Contig131483.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig131485 Length: 18669 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/9A/DE/Contig131485//theVoid.Contig131485/0/Contig131485.0.all.rb -species all -dir /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/9A/DE/Contig131485//theVoid.Contig131485/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131485.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/9A/DE/Contig131485//theVoid.Contig131485/0/Contig131485.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131485.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/9A/DE/Contig131485//theVoid.Contig131485/0/Contig131485.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131485.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/9A/DE/Contig131485//theVoid.Contig131485/0/Contig131485.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131485.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/9A/DE/Contig131485//theVoid.Contig131485/0/Contig131485.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131485.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/9A/DE/Contig131485//theVoid.Contig131485/0/Contig131485.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131485.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/9A/DE/Contig131485//theVoid.Contig131485/0/Contig131485.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131485.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/9A/DE/Contig131485//theVoid.Contig131485/0/Contig131485.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131485.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/9A/DE/Contig131485//theVoid.Contig131485/0/Contig131485.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131485.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/9A/DE/Contig131485//theVoid.Contig131485/0/Contig131485.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131485.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/9A/DE/Contig131485//theVoid.Contig131485/0/Contig131485.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/comp43732_c0_seq10.for.16245-17204.0.fasta -t /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131485.16245-17204.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131485.16245-17204.comp43732_c0_seq10.e.exonerate #-------------------------------# cleaning blastn... cleaning clusters.... total clusters:1 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131485.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/9A/DE/Contig131485//theVoid.Contig131485/0/Contig131485.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131485.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/9A/DE/Contig131485//theVoid.Contig131485/0/Contig131485.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131485.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/9A/DE/Contig131485//theVoid.Contig131485/0/Contig131485.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131485.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/9A/DE/Contig131485//theVoid.Contig131485/0/Contig131485.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131485.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/9A/DE/Contig131485//theVoid.Contig131485/0/Contig131485.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131485.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/9A/DE/Contig131485//theVoid.Contig131485/0/Contig131485.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131485.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/9A/DE/Contig131485//theVoid.Contig131485/0/Contig131485.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131485.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/9A/DE/Contig131485//theVoid.Contig131485/0/Contig131485.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131485.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/9A/DE/Contig131485//theVoid.Contig131485/0/Contig131485.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131485.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/9A/DE/Contig131485//theVoid.Contig131485/0/Contig131485.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig131486 Length: 1236 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/56/8D/Contig131486//theVoid.Contig131486/0/Contig131486.0.all.rb -species all -dir /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/56/8D/Contig131486//theVoid.Contig131486/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131486.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/56/8D/Contig131486//theVoid.Contig131486/0/Contig131486.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131486.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/56/8D/Contig131486//theVoid.Contig131486/0/Contig131486.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131486.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/56/8D/Contig131486//theVoid.Contig131486/0/Contig131486.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131486.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/56/8D/Contig131486//theVoid.Contig131486/0/Contig131486.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131486.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/56/8D/Contig131486//theVoid.Contig131486/0/Contig131486.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131486.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/56/8D/Contig131486//theVoid.Contig131486/0/Contig131486.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131486.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/56/8D/Contig131486//theVoid.Contig131486/0/Contig131486.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131486.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/56/8D/Contig131486//theVoid.Contig131486/0/Contig131486.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131486.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/56/8D/Contig131486//theVoid.Contig131486/0/Contig131486.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131486.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/56/8D/Contig131486//theVoid.Contig131486/0/Contig131486.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131486.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/56/8D/Contig131486//theVoid.Contig131486/0/Contig131486.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131486.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/56/8D/Contig131486//theVoid.Contig131486/0/Contig131486.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131486.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/56/8D/Contig131486//theVoid.Contig131486/0/Contig131486.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131486.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/56/8D/Contig131486//theVoid.Contig131486/0/Contig131486.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131486.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/56/8D/Contig131486//theVoid.Contig131486/0/Contig131486.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131486.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/56/8D/Contig131486//theVoid.Contig131486/0/Contig131486.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131486.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/56/8D/Contig131486//theVoid.Contig131486/0/Contig131486.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131486.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/56/8D/Contig131486//theVoid.Contig131486/0/Contig131486.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131486.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/56/8D/Contig131486//theVoid.Contig131486/0/Contig131486.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131486.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/56/8D/Contig131486//theVoid.Contig131486/0/Contig131486.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig131487 Length: 1120 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/65/AE/Contig131487//theVoid.Contig131487/0/Contig131487.0.all.rb -species all -dir /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/65/AE/Contig131487//theVoid.Contig131487/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131487.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/65/AE/Contig131487//theVoid.Contig131487/0/Contig131487.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131487.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/65/AE/Contig131487//theVoid.Contig131487/0/Contig131487.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131487.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/65/AE/Contig131487//theVoid.Contig131487/0/Contig131487.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131487.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/65/AE/Contig131487//theVoid.Contig131487/0/Contig131487.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131487.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/65/AE/Contig131487//theVoid.Contig131487/0/Contig131487.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131487.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/65/AE/Contig131487//theVoid.Contig131487/0/Contig131487.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131487.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/65/AE/Contig131487//theVoid.Contig131487/0/Contig131487.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131487.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/65/AE/Contig131487//theVoid.Contig131487/0/Contig131487.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131487.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/65/AE/Contig131487//theVoid.Contig131487/0/Contig131487.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131487.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/65/AE/Contig131487//theVoid.Contig131487/0/Contig131487.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131487.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/65/AE/Contig131487//theVoid.Contig131487/0/Contig131487.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131487.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/65/AE/Contig131487//theVoid.Contig131487/0/Contig131487.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131487.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/65/AE/Contig131487//theVoid.Contig131487/0/Contig131487.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131487.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/65/AE/Contig131487//theVoid.Contig131487/0/Contig131487.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131487.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/65/AE/Contig131487//theVoid.Contig131487/0/Contig131487.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131487.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/65/AE/Contig131487//theVoid.Contig131487/0/Contig131487.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131487.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/65/AE/Contig131487//theVoid.Contig131487/0/Contig131487.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131487.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/65/AE/Contig131487//theVoid.Contig131487/0/Contig131487.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131487.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/65/AE/Contig131487//theVoid.Contig131487/0/Contig131487.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131487.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/65/AE/Contig131487//theVoid.Contig131487/0/Contig131487.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig131488 Length: 2039 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/ED/89/Contig131488//theVoid.Contig131488/0/Contig131488.0.all.rb -species all -dir /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/ED/89/Contig131488//theVoid.Contig131488/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131488.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/ED/89/Contig131488//theVoid.Contig131488/0/Contig131488.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131488.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/ED/89/Contig131488//theVoid.Contig131488/0/Contig131488.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131488.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/ED/89/Contig131488//theVoid.Contig131488/0/Contig131488.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131488.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/ED/89/Contig131488//theVoid.Contig131488/0/Contig131488.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131488.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/ED/89/Contig131488//theVoid.Contig131488/0/Contig131488.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131488.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/ED/89/Contig131488//theVoid.Contig131488/0/Contig131488.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131488.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/ED/89/Contig131488//theVoid.Contig131488/0/Contig131488.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131488.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/ED/89/Contig131488//theVoid.Contig131488/0/Contig131488.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131488.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/ED/89/Contig131488//theVoid.Contig131488/0/Contig131488.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131488.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/ED/89/Contig131488//theVoid.Contig131488/0/Contig131488.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:3 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131488.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/ED/89/Contig131488//theVoid.Contig131488/0/Contig131488.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131488.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/ED/89/Contig131488//theVoid.Contig131488/0/Contig131488.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131488.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/ED/89/Contig131488//theVoid.Contig131488/0/Contig131488.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131488.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/ED/89/Contig131488//theVoid.Contig131488/0/Contig131488.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131488.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/ED/89/Contig131488//theVoid.Contig131488/0/Contig131488.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131488.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/ED/89/Contig131488//theVoid.Contig131488/0/Contig131488.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131488.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/ED/89/Contig131488//theVoid.Contig131488/0/Contig131488.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131488.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/ED/89/Contig131488//theVoid.Contig131488/0/Contig131488.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131488.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/ED/89/Contig131488//theVoid.Contig131488/0/Contig131488.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131488.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/ED/89/Contig131488//theVoid.Contig131488/0/Contig131488.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig131489 Length: 4915 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/90/BA/Contig131489//theVoid.Contig131489/0/Contig131489.0.all.rb -species all -dir /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/90/BA/Contig131489//theVoid.Contig131489/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131489.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/90/BA/Contig131489//theVoid.Contig131489/0/Contig131489.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131489.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/90/BA/Contig131489//theVoid.Contig131489/0/Contig131489.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131489.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/90/BA/Contig131489//theVoid.Contig131489/0/Contig131489.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131489.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/90/BA/Contig131489//theVoid.Contig131489/0/Contig131489.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131489.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/90/BA/Contig131489//theVoid.Contig131489/0/Contig131489.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131489.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/90/BA/Contig131489//theVoid.Contig131489/0/Contig131489.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131489.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/90/BA/Contig131489//theVoid.Contig131489/0/Contig131489.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131489.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/90/BA/Contig131489//theVoid.Contig131489/0/Contig131489.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131489.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/90/BA/Contig131489//theVoid.Contig131489/0/Contig131489.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131489.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/90/BA/Contig131489//theVoid.Contig131489/0/Contig131489.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131489.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/90/BA/Contig131489//theVoid.Contig131489/0/Contig131489.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131489.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/90/BA/Contig131489//theVoid.Contig131489/0/Contig131489.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131489.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/90/BA/Contig131489//theVoid.Contig131489/0/Contig131489.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131489.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/90/BA/Contig131489//theVoid.Contig131489/0/Contig131489.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131489.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/90/BA/Contig131489//theVoid.Contig131489/0/Contig131489.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131489.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/90/BA/Contig131489//theVoid.Contig131489/0/Contig131489.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131489.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/90/BA/Contig131489//theVoid.Contig131489/0/Contig131489.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131489.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/90/BA/Contig131489//theVoid.Contig131489/0/Contig131489.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131489.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/90/BA/Contig131489//theVoid.Contig131489/0/Contig131489.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131489.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/90/BA/Contig131489//theVoid.Contig131489/0/Contig131489.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig131490 Length: 1788 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/94/F9/Contig131490//theVoid.Contig131490/0/Contig131490.0.all.rb -species all -dir /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/94/F9/Contig131490//theVoid.Contig131490/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131490.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/94/F9/Contig131490//theVoid.Contig131490/0/Contig131490.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131490.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/94/F9/Contig131490//theVoid.Contig131490/0/Contig131490.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131490.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/94/F9/Contig131490//theVoid.Contig131490/0/Contig131490.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131490.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/94/F9/Contig131490//theVoid.Contig131490/0/Contig131490.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131490.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/94/F9/Contig131490//theVoid.Contig131490/0/Contig131490.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131490.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/94/F9/Contig131490//theVoid.Contig131490/0/Contig131490.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131490.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/94/F9/Contig131490//theVoid.Contig131490/0/Contig131490.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131490.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/94/F9/Contig131490//theVoid.Contig131490/0/Contig131490.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131490.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/94/F9/Contig131490//theVoid.Contig131490/0/Contig131490.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131490.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/94/F9/Contig131490//theVoid.Contig131490/0/Contig131490.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/comp39281_c3_seq2.for.64-1085.0.fasta -t /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131490.64-1085.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131490.64-1085.comp39281_c3_seq2.e.exonerate #-------------------------------# cleaning blastn... flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131490.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/94/F9/Contig131490//theVoid.Contig131490/0/Contig131490.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131490.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/94/F9/Contig131490//theVoid.Contig131490/0/Contig131490.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131490.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/94/F9/Contig131490//theVoid.Contig131490/0/Contig131490.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131490.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/94/F9/Contig131490//theVoid.Contig131490/0/Contig131490.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131490.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/94/F9/Contig131490//theVoid.Contig131490/0/Contig131490.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131490.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/94/F9/Contig131490//theVoid.Contig131490/0/Contig131490.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131490.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/94/F9/Contig131490//theVoid.Contig131490/0/Contig131490.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131490.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/94/F9/Contig131490//theVoid.Contig131490/0/Contig131490.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131490.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/94/F9/Contig131490//theVoid.Contig131490/0/Contig131490.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131490.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/94/F9/Contig131490//theVoid.Contig131490/0/Contig131490.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig131491 Length: 3382 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/D3/FC/Contig131491//theVoid.Contig131491/0/Contig131491.0.all.rb -species all -dir /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/D3/FC/Contig131491//theVoid.Contig131491/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131491.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/D3/FC/Contig131491//theVoid.Contig131491/0/Contig131491.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131491.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/D3/FC/Contig131491//theVoid.Contig131491/0/Contig131491.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131491.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/D3/FC/Contig131491//theVoid.Contig131491/0/Contig131491.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131491.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/D3/FC/Contig131491//theVoid.Contig131491/0/Contig131491.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131491.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/D3/FC/Contig131491//theVoid.Contig131491/0/Contig131491.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131491.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/D3/FC/Contig131491//theVoid.Contig131491/0/Contig131491.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131491.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/D3/FC/Contig131491//theVoid.Contig131491/0/Contig131491.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131491.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/D3/FC/Contig131491//theVoid.Contig131491/0/Contig131491.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131491.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/D3/FC/Contig131491//theVoid.Contig131491/0/Contig131491.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131491.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/D3/FC/Contig131491//theVoid.Contig131491/0/Contig131491.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:3 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131491.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/D3/FC/Contig131491//theVoid.Contig131491/0/Contig131491.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131491.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/D3/FC/Contig131491//theVoid.Contig131491/0/Contig131491.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131491.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/D3/FC/Contig131491//theVoid.Contig131491/0/Contig131491.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131491.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/D3/FC/Contig131491//theVoid.Contig131491/0/Contig131491.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131491.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/D3/FC/Contig131491//theVoid.Contig131491/0/Contig131491.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131491.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/D3/FC/Contig131491//theVoid.Contig131491/0/Contig131491.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131491.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/D3/FC/Contig131491//theVoid.Contig131491/0/Contig131491.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131491.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/D3/FC/Contig131491//theVoid.Contig131491/0/Contig131491.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131491.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/D3/FC/Contig131491//theVoid.Contig131491/0/Contig131491.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.32/cctools-temp-t.32.bxzNsF/maker_SE6Y4s/0/Contig131491.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.32/Olurida_v081.maker.output/Olurida_v081_datastore/D3/FC/Contig131491//theVoid.Contig131491/0/Contig131491.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output Maker is now finished!!! Start_time: 1533652860 End_time: 1533653141 Elapsed: 281 ================================= Argument "2.53_01" isn't numeric in numeric ge (>=) at /usr/local/lib/x86_64-linux-gnu/perl/5.22.1/forks.pm line 1570. Unknown option: debug_size_limit STATUS: Parsing control files... STATUS: Processing and indexing input FASTA files... STATUS: Setting up database for any GFF3 input... A data structure will be created for you at: /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore To access files for individual sequences use the datastore index: /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_master_datastore_index.log STATUS: Now running MAKER... examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig107032 Length: 2871 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/D1/F8/Contig107032//theVoid.Contig107032/0/Contig107032.0.all.rb -species all -dir /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/D1/F8/Contig107032//theVoid.Contig107032/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107032.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/D1/F8/Contig107032//theVoid.Contig107032/0/Contig107032.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107032.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/D1/F8/Contig107032//theVoid.Contig107032/0/Contig107032.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107032.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/D1/F8/Contig107032//theVoid.Contig107032/0/Contig107032.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107032.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/D1/F8/Contig107032//theVoid.Contig107032/0/Contig107032.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107032.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/D1/F8/Contig107032//theVoid.Contig107032/0/Contig107032.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107032.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/D1/F8/Contig107032//theVoid.Contig107032/0/Contig107032.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107032.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/D1/F8/Contig107032//theVoid.Contig107032/0/Contig107032.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107032.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/D1/F8/Contig107032//theVoid.Contig107032/0/Contig107032.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107032.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/D1/F8/Contig107032//theVoid.Contig107032/0/Contig107032.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107032.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/D1/F8/Contig107032//theVoid.Contig107032/0/Contig107032.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107032.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/D1/F8/Contig107032//theVoid.Contig107032/0/Contig107032.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107032.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/D1/F8/Contig107032//theVoid.Contig107032/0/Contig107032.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107032.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/D1/F8/Contig107032//theVoid.Contig107032/0/Contig107032.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107032.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/D1/F8/Contig107032//theVoid.Contig107032/0/Contig107032.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107032.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/D1/F8/Contig107032//theVoid.Contig107032/0/Contig107032.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107032.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/D1/F8/Contig107032//theVoid.Contig107032/0/Contig107032.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107032.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/D1/F8/Contig107032//theVoid.Contig107032/0/Contig107032.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107032.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/D1/F8/Contig107032//theVoid.Contig107032/0/Contig107032.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107032.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/D1/F8/Contig107032//theVoid.Contig107032/0/Contig107032.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107032.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/D1/F8/Contig107032//theVoid.Contig107032/0/Contig107032.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig107033 Length: 2167 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/6D/95/Contig107033//theVoid.Contig107033/0/Contig107033.0.all.rb -species all -dir /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/6D/95/Contig107033//theVoid.Contig107033/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107033.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/6D/95/Contig107033//theVoid.Contig107033/0/Contig107033.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107033.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/6D/95/Contig107033//theVoid.Contig107033/0/Contig107033.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107033.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/6D/95/Contig107033//theVoid.Contig107033/0/Contig107033.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107033.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/6D/95/Contig107033//theVoid.Contig107033/0/Contig107033.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107033.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/6D/95/Contig107033//theVoid.Contig107033/0/Contig107033.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107033.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/6D/95/Contig107033//theVoid.Contig107033/0/Contig107033.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107033.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/6D/95/Contig107033//theVoid.Contig107033/0/Contig107033.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107033.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/6D/95/Contig107033//theVoid.Contig107033/0/Contig107033.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107033.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/6D/95/Contig107033//theVoid.Contig107033/0/Contig107033.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107033.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/6D/95/Contig107033//theVoid.Contig107033/0/Contig107033.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/comp26062_c0_seq1.for.1557-2167.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107033.1557-2167.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107033.1557-2167.comp26062_c0_seq1.e.exonerate #-------------------------------# cleaning blastn... cleaning clusters.... total clusters:1 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107033.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/6D/95/Contig107033//theVoid.Contig107033/0/Contig107033.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107033.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/6D/95/Contig107033//theVoid.Contig107033/0/Contig107033.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107033.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/6D/95/Contig107033//theVoid.Contig107033/0/Contig107033.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107033.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/6D/95/Contig107033//theVoid.Contig107033/0/Contig107033.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107033.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/6D/95/Contig107033//theVoid.Contig107033/0/Contig107033.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107033.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/6D/95/Contig107033//theVoid.Contig107033/0/Contig107033.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107033.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/6D/95/Contig107033//theVoid.Contig107033/0/Contig107033.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107033.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/6D/95/Contig107033//theVoid.Contig107033/0/Contig107033.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107033.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/6D/95/Contig107033//theVoid.Contig107033/0/Contig107033.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107033.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/6D/95/Contig107033//theVoid.Contig107033/0/Contig107033.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig107034 Length: 7469 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/4D/89/Contig107034//theVoid.Contig107034/0/Contig107034.0.all.rb -species all -dir /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/4D/89/Contig107034//theVoid.Contig107034/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107034.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/4D/89/Contig107034//theVoid.Contig107034/0/Contig107034.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107034.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/4D/89/Contig107034//theVoid.Contig107034/0/Contig107034.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107034.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/4D/89/Contig107034//theVoid.Contig107034/0/Contig107034.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107034.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/4D/89/Contig107034//theVoid.Contig107034/0/Contig107034.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107034.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/4D/89/Contig107034//theVoid.Contig107034/0/Contig107034.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107034.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/4D/89/Contig107034//theVoid.Contig107034/0/Contig107034.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107034.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/4D/89/Contig107034//theVoid.Contig107034/0/Contig107034.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107034.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/4D/89/Contig107034//theVoid.Contig107034/0/Contig107034.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107034.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/4D/89/Contig107034//theVoid.Contig107034/0/Contig107034.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107034.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/4D/89/Contig107034//theVoid.Contig107034/0/Contig107034.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:3 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107034.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/4D/89/Contig107034//theVoid.Contig107034/0/Contig107034.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107034.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/4D/89/Contig107034//theVoid.Contig107034/0/Contig107034.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107034.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/4D/89/Contig107034//theVoid.Contig107034/0/Contig107034.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107034.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/4D/89/Contig107034//theVoid.Contig107034/0/Contig107034.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107034.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/4D/89/Contig107034//theVoid.Contig107034/0/Contig107034.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107034.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/4D/89/Contig107034//theVoid.Contig107034/0/Contig107034.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107034.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/4D/89/Contig107034//theVoid.Contig107034/0/Contig107034.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107034.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/4D/89/Contig107034//theVoid.Contig107034/0/Contig107034.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107034.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/4D/89/Contig107034//theVoid.Contig107034/0/Contig107034.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107034.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/4D/89/Contig107034//theVoid.Contig107034/0/Contig107034.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:2 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig107035 Length: 3969 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/04/C1/Contig107035//theVoid.Contig107035/0/Contig107035.0.all.rb -species all -dir /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/04/C1/Contig107035//theVoid.Contig107035/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107035.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/04/C1/Contig107035//theVoid.Contig107035/0/Contig107035.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107035.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/04/C1/Contig107035//theVoid.Contig107035/0/Contig107035.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107035.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/04/C1/Contig107035//theVoid.Contig107035/0/Contig107035.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107035.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/04/C1/Contig107035//theVoid.Contig107035/0/Contig107035.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107035.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/04/C1/Contig107035//theVoid.Contig107035/0/Contig107035.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107035.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/04/C1/Contig107035//theVoid.Contig107035/0/Contig107035.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107035.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/04/C1/Contig107035//theVoid.Contig107035/0/Contig107035.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107035.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/04/C1/Contig107035//theVoid.Contig107035/0/Contig107035.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107035.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/04/C1/Contig107035//theVoid.Contig107035/0/Contig107035.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107035.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/04/C1/Contig107035//theVoid.Contig107035/0/Contig107035.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107035.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/04/C1/Contig107035//theVoid.Contig107035/0/Contig107035.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107035.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/04/C1/Contig107035//theVoid.Contig107035/0/Contig107035.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107035.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/04/C1/Contig107035//theVoid.Contig107035/0/Contig107035.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107035.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/04/C1/Contig107035//theVoid.Contig107035/0/Contig107035.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107035.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/04/C1/Contig107035//theVoid.Contig107035/0/Contig107035.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107035.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/04/C1/Contig107035//theVoid.Contig107035/0/Contig107035.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107035.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/04/C1/Contig107035//theVoid.Contig107035/0/Contig107035.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107035.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/04/C1/Contig107035//theVoid.Contig107035/0/Contig107035.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107035.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/04/C1/Contig107035//theVoid.Contig107035/0/Contig107035.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107035.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/04/C1/Contig107035//theVoid.Contig107035/0/Contig107035.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig107036 Length: 3842 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/A5/75/Contig107036//theVoid.Contig107036/0/Contig107036.0.all.rb -species all -dir /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/A5/75/Contig107036//theVoid.Contig107036/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107036.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/A5/75/Contig107036//theVoid.Contig107036/0/Contig107036.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107036.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/A5/75/Contig107036//theVoid.Contig107036/0/Contig107036.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107036.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/A5/75/Contig107036//theVoid.Contig107036/0/Contig107036.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107036.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/A5/75/Contig107036//theVoid.Contig107036/0/Contig107036.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107036.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/A5/75/Contig107036//theVoid.Contig107036/0/Contig107036.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107036.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/A5/75/Contig107036//theVoid.Contig107036/0/Contig107036.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107036.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/A5/75/Contig107036//theVoid.Contig107036/0/Contig107036.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107036.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/A5/75/Contig107036//theVoid.Contig107036/0/Contig107036.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107036.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/A5/75/Contig107036//theVoid.Contig107036/0/Contig107036.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107036.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/A5/75/Contig107036//theVoid.Contig107036/0/Contig107036.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/comp40493_c1_seq7.for.1203-2328.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107036.1203-2328.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107036.1203-2328.comp40493_c1_seq7.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/comp39782_c0_seq3.for.1685-2762.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107036.1685-2762.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107036.1685-2762.comp39782_c0_seq3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/comp39782_c0_seq6.for.1685-2762.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107036.1685-2762.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107036.1685-2762.comp39782_c0_seq6.e.exonerate #-------------------------------# cleaning blastn... flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107036.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/A5/75/Contig107036//theVoid.Contig107036/0/Contig107036.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107036.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/A5/75/Contig107036//theVoid.Contig107036/0/Contig107036.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107036.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/A5/75/Contig107036//theVoid.Contig107036/0/Contig107036.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107036.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/A5/75/Contig107036//theVoid.Contig107036/0/Contig107036.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107036.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/A5/75/Contig107036//theVoid.Contig107036/0/Contig107036.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107036.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/A5/75/Contig107036//theVoid.Contig107036/0/Contig107036.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107036.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/A5/75/Contig107036//theVoid.Contig107036/0/Contig107036.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107036.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/A5/75/Contig107036//theVoid.Contig107036/0/Contig107036.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107036.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/A5/75/Contig107036//theVoid.Contig107036/0/Contig107036.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107036.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/A5/75/Contig107036//theVoid.Contig107036/0/Contig107036.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig107037 Length: 6434 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/42/B9/Contig107037//theVoid.Contig107037/0/Contig107037.0.all.rb -species all -dir /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/42/B9/Contig107037//theVoid.Contig107037/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/42/B9/Contig107037//theVoid.Contig107037/0/Contig107037.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/42/B9/Contig107037//theVoid.Contig107037/0/Contig107037.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/42/B9/Contig107037//theVoid.Contig107037/0/Contig107037.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/42/B9/Contig107037//theVoid.Contig107037/0/Contig107037.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/42/B9/Contig107037//theVoid.Contig107037/0/Contig107037.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/42/B9/Contig107037//theVoid.Contig107037/0/Contig107037.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/42/B9/Contig107037//theVoid.Contig107037/0/Contig107037.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/42/B9/Contig107037//theVoid.Contig107037/0/Contig107037.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/42/B9/Contig107037//theVoid.Contig107037/0/Contig107037.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/42/B9/Contig107037//theVoid.Contig107037/0/Contig107037.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/comp43168_c1_seq8.for.727-1930.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.727-1930.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.727-1930.comp43168_c1_seq8.e.exonerate #-------------------------------# cleaning blastn... cleaning clusters.... total clusters:1 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/42/B9/Contig107037//theVoid.Contig107037/0/Contig107037.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:3 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/42/B9/Contig107037//theVoid.Contig107037/0/Contig107037.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:3 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/42/B9/Contig107037//theVoid.Contig107037/0/Contig107037.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:4 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/42/B9/Contig107037//theVoid.Contig107037/0/Contig107037.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:5 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/42/B9/Contig107037//theVoid.Contig107037/0/Contig107037.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:4 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/42/B9/Contig107037//theVoid.Contig107037/0/Contig107037.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:6 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/42/B9/Contig107037//theVoid.Contig107037/0/Contig107037.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:5 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/42/B9/Contig107037//theVoid.Contig107037/0/Contig107037.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:4 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/42/B9/Contig107037//theVoid.Contig107037/0/Contig107037.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:6 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/42/B9/Contig107037//theVoid.Contig107037/0/Contig107037.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:11 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/XP_022346191%2E1.for.3948-6434.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3948-6434.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3948-6434.XP_022346191%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/XP_022344521%2E1.for.3936-6434.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3936-6434.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3936-6434.XP_022344521%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/XP_022305721%2E1.for.3957-6434.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3957-6434.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3957-6434.XP_022305721%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/XP_022333461%2E1.for.3939-6434.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3939-6434.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3939-6434.XP_022333461%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/XP_022335721%2E1.for.3948-6434.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3948-6434.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3948-6434.XP_022335721%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/XP_022292011%2E1.for.3948-6434.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3948-6434.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3948-6434.XP_022292011%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/XP_022332041%2E1.for.3936-5615.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3936-5615.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3936-5615.XP_022332041%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/XP_022337412%2E1.for.3948-6434.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3948-6434.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3948-6434.XP_022337412%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/XP_022300822%2E1.for.3948-6434.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3948-6434.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3948-6434.XP_022300822%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/XP_022340582%2E1.for.3948-6434.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3948-6434.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3948-6434.XP_022340582%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/XP_022322982%2E1.for.3936-5968.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3936-5968.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3936-5968.XP_022322982%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/XP_022307842%2E1.for.3948-5977.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3948-5977.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3948-5977.XP_022307842%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/XP_022312482%2E1.for.3948-5816.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3948-5816.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3948-5816.XP_022312482%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/XP_022329403%2E1.for.3948-6434.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3948-6434.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3948-6434.XP_022329403%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/XP_022290413%2E1.for.3948-6434.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3948-6434.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3948-6434.XP_022290413%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/XP_022337413%2E1.for.3948-6434.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3948-6434.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3948-6434.XP_022337413%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/XP_022316603%2E1.for.3981-6434.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3981-6434.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3981-6434.XP_022316603%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/XP_022330213%2E1.for.4924-6434.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.4924-6434.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.4924-6434.XP_022330213%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/XP_022322983%2E1.for.5490-6434.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.5490-6434.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.5490-6434.XP_022322983%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/XP_022311274%2E1.for.4089-6434.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.4089-6434.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.4089-6434.XP_022311274%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/XP_022336324%2E1.for.3948-6434.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3948-6434.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3948-6434.XP_022336324%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/XP_022307894%2E1.for.4434-6434.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.4434-6434.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.4434-6434.XP_022307894%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/XP_022311714%2E1.for.3948-5615.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3948-5615.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3948-5615.XP_022311714%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/XP_022307395%2E1.for.3939-6434.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3939-6434.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3939-6434.XP_022307395%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/XP_022337195%2E1.for.3936-6434.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3936-6434.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3936-6434.XP_022337195%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/XP_022335866%2E1.for.3948-6434.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3948-6434.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3948-6434.XP_022335866%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/XP_022307786%2E1.for.3957-6434.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3957-6434.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3957-6434.XP_022307786%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/XP_022307956%2E1.for.3939-6434.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3939-6434.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3939-6434.XP_022307956%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/XP_022301176%2E1.for.3948-6434.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3948-6434.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3948-6434.XP_022301176%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/XP_022301036%2E1.for.4663-5861.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.4663-5861.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.4663-5861.XP_022301036%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/XP_022300886%2E1.for.4332-5458.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.4332-5458.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.4332-5458.XP_022300886%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/XP_022307547%2E1.for.3948-6434.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3948-6434.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3948-6434.XP_022307547%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/XP_022305787%2E1.for.4089-6434.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.4089-6434.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.4089-6434.XP_022305787%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/XP_022306557%2E1.for.3945-6434.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3945-6434.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3945-6434.XP_022306557%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/XP_022308157%2E1.for.3948-6434.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3948-6434.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3948-6434.XP_022308157%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/XP_022310667%2E1.for.3948-5861.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3948-5861.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3948-5861.XP_022310667%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/XP_022290437%2E1.for.4308-6212.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.4308-6212.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.4308-6212.XP_022290437%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/XP_022290507%2E1.for.4185-5861.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.4185-5861.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.4185-5861.XP_022290507%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/XP_022331867%2E1.for.4089-5615.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.4089-5615.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.4089-5615.XP_022331867%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/XP_022306708%2E1.for.3948-6434.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3948-6434.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3948-6434.XP_022306708%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/XP_022298208%2E1.for.3951-6434.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3951-6434.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3951-6434.XP_022298208%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/XP_022295008%2E1.for.4771-6001.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.4771-6001.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.4771-6001.XP_022295008%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/XP_022346189%2E1.for.3948-6434.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3948-6434.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3948-6434.XP_022346189%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/XP_022310979%2E1.for.3936-6434.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3936-6434.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3936-6434.XP_022310979%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/XP_022311139%2E1.for.3939-6434.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3939-6434.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3939-6434.XP_022311139%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/XP_022331189%2E1.for.3948-5464.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3948-5464.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3948-5464.XP_022331189%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/XP_022319739%2E1.for.3948-5464.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3948-5464.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3948-5464.XP_022319739%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/XP_022346190%2E1.for.3948-6434.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3948-6434.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3948-6434.XP_022346190%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/XP_022345650%2E1.for.3957-6434.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3957-6434.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.3957-6434.XP_022345650%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/XP_022311140%2E1.for.4392-6434.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.4392-6434.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107037.4392-6434.XP_022311140%2E1.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:1 now processing 0 ...processing 0 of 23 ...processing 1 of 23 ...processing 2 of 23 ...processing 3 of 23 ...processing 4 of 23 ...processing 5 of 23 ...processing 6 of 23 ...processing 7 of 23 ...processing 8 of 23 ...processing 9 of 23 ...processing 10 of 23 ...processing 11 of 23 ...processing 12 of 23 ...processing 13 of 23 ...processing 14 of 23 ...processing 15 of 23 ...processing 16 of 23 ...processing 17 of 23 ...processing 18 of 23 ...processing 19 of 23 ...processing 20 of 23 ...processing 21 of 23 ...processing 22 of 23 in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:2 now processing 0 ...processing 0 of 5 ...processing 1 of 5 ...processing 2 of 5 ...processing 3 of 5 ...processing 4 of 5 total clusters:2 now processing 0 flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig107038 Length: 5125 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/DD/84/Contig107038//theVoid.Contig107038/0/Contig107038.0.all.rb -species all -dir /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/DD/84/Contig107038//theVoid.Contig107038/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107038.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/DD/84/Contig107038//theVoid.Contig107038/0/Contig107038.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107038.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/DD/84/Contig107038//theVoid.Contig107038/0/Contig107038.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107038.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/DD/84/Contig107038//theVoid.Contig107038/0/Contig107038.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107038.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/DD/84/Contig107038//theVoid.Contig107038/0/Contig107038.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107038.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/DD/84/Contig107038//theVoid.Contig107038/0/Contig107038.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107038.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/DD/84/Contig107038//theVoid.Contig107038/0/Contig107038.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107038.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/DD/84/Contig107038//theVoid.Contig107038/0/Contig107038.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107038.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/DD/84/Contig107038//theVoid.Contig107038/0/Contig107038.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107038.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/DD/84/Contig107038//theVoid.Contig107038/0/Contig107038.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107038.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/DD/84/Contig107038//theVoid.Contig107038/0/Contig107038.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/comp35864_c0_seq9.for.3300-4429.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107038.3300-4429.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107038.3300-4429.comp35864_c0_seq9.e.exonerate #-------------------------------# cleaning blastn... flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107038.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/DD/84/Contig107038//theVoid.Contig107038/0/Contig107038.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107038.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/DD/84/Contig107038//theVoid.Contig107038/0/Contig107038.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107038.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/DD/84/Contig107038//theVoid.Contig107038/0/Contig107038.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107038.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/DD/84/Contig107038//theVoid.Contig107038/0/Contig107038.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107038.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/DD/84/Contig107038//theVoid.Contig107038/0/Contig107038.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107038.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/DD/84/Contig107038//theVoid.Contig107038/0/Contig107038.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107038.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/DD/84/Contig107038//theVoid.Contig107038/0/Contig107038.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107038.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/DD/84/Contig107038//theVoid.Contig107038/0/Contig107038.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107038.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/DD/84/Contig107038//theVoid.Contig107038/0/Contig107038.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107038.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/DD/84/Contig107038//theVoid.Contig107038/0/Contig107038.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig107039 Length: 2387 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/B7/30/Contig107039//theVoid.Contig107039/0/Contig107039.0.all.rb -species all -dir /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/B7/30/Contig107039//theVoid.Contig107039/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107039.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/B7/30/Contig107039//theVoid.Contig107039/0/Contig107039.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107039.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/B7/30/Contig107039//theVoid.Contig107039/0/Contig107039.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107039.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/B7/30/Contig107039//theVoid.Contig107039/0/Contig107039.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107039.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/B7/30/Contig107039//theVoid.Contig107039/0/Contig107039.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107039.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/B7/30/Contig107039//theVoid.Contig107039/0/Contig107039.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107039.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/B7/30/Contig107039//theVoid.Contig107039/0/Contig107039.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107039.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/B7/30/Contig107039//theVoid.Contig107039/0/Contig107039.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107039.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/B7/30/Contig107039//theVoid.Contig107039/0/Contig107039.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107039.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/B7/30/Contig107039//theVoid.Contig107039/0/Contig107039.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107039.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/B7/30/Contig107039//theVoid.Contig107039/0/Contig107039.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/comp41900_c0_seq16.for.1-2387.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107039.1-2387.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107039.1-2387.comp41900_c0_seq16.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/comp41900_c0_seq19.for.1-2387.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107039.1-2387.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107039.1-2387.comp41900_c0_seq19.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/comp41900_c0_seq2.for.1-2387.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107039.1-2387.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107039.1-2387.comp41900_c0_seq2.e.exonerate #-------------------------------# cleaning blastn... flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107039.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/B7/30/Contig107039//theVoid.Contig107039/0/Contig107039.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107039.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/B7/30/Contig107039//theVoid.Contig107039/0/Contig107039.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107039.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/B7/30/Contig107039//theVoid.Contig107039/0/Contig107039.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107039.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/B7/30/Contig107039//theVoid.Contig107039/0/Contig107039.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107039.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/B7/30/Contig107039//theVoid.Contig107039/0/Contig107039.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107039.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/B7/30/Contig107039//theVoid.Contig107039/0/Contig107039.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107039.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/B7/30/Contig107039//theVoid.Contig107039/0/Contig107039.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107039.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/B7/30/Contig107039//theVoid.Contig107039/0/Contig107039.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107039.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/B7/30/Contig107039//theVoid.Contig107039/0/Contig107039.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107039.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/B7/30/Contig107039//theVoid.Contig107039/0/Contig107039.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig107040 Length: 2826 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/E8/E5/Contig107040//theVoid.Contig107040/0/Contig107040.0.all.rb -species all -dir /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/E8/E5/Contig107040//theVoid.Contig107040/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107040.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/E8/E5/Contig107040//theVoid.Contig107040/0/Contig107040.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107040.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/E8/E5/Contig107040//theVoid.Contig107040/0/Contig107040.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107040.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/E8/E5/Contig107040//theVoid.Contig107040/0/Contig107040.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107040.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/E8/E5/Contig107040//theVoid.Contig107040/0/Contig107040.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107040.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/E8/E5/Contig107040//theVoid.Contig107040/0/Contig107040.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107040.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/E8/E5/Contig107040//theVoid.Contig107040/0/Contig107040.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107040.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/E8/E5/Contig107040//theVoid.Contig107040/0/Contig107040.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107040.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/E8/E5/Contig107040//theVoid.Contig107040/0/Contig107040.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107040.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/E8/E5/Contig107040//theVoid.Contig107040/0/Contig107040.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107040.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/E8/E5/Contig107040//theVoid.Contig107040/0/Contig107040.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/comp37982_c0_seq4.for.275-1296.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107040.275-1296.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107040.275-1296.comp37982_c0_seq4.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/comp37982_c0_seq5.for.263-1196.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107040.263-1196.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107040.263-1196.comp37982_c0_seq5.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/comp37982_c0_seq7.for.275-1316.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107040.275-1316.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107040.275-1316.comp37982_c0_seq7.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/comp37982_c0_seq2.for.263-1316.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107040.263-1316.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107040.263-1316.comp37982_c0_seq2.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:2 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:2 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107040.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/E8/E5/Contig107040//theVoid.Contig107040/0/Contig107040.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107040.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/E8/E5/Contig107040//theVoid.Contig107040/0/Contig107040.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107040.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/E8/E5/Contig107040//theVoid.Contig107040/0/Contig107040.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107040.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/E8/E5/Contig107040//theVoid.Contig107040/0/Contig107040.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107040.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/E8/E5/Contig107040//theVoid.Contig107040/0/Contig107040.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107040.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/E8/E5/Contig107040//theVoid.Contig107040/0/Contig107040.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107040.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/E8/E5/Contig107040//theVoid.Contig107040/0/Contig107040.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107040.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/E8/E5/Contig107040//theVoid.Contig107040/0/Contig107040.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107040.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/E8/E5/Contig107040//theVoid.Contig107040/0/Contig107040.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107040.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/E8/E5/Contig107040//theVoid.Contig107040/0/Contig107040.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/XP_022301961%2E1.for.1343-2484.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107040.1343-2484.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107040.1343-2484.XP_022301961%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/XP_022299761%2E1.for.1343-2484.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107040.1343-2484.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107040.1343-2484.XP_022299761%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/XP_022299762%2E1.for.1343-2487.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107040.1343-2487.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107040.1343-2487.XP_022299762%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/XP_022301963%2E1.for.1343-2484.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107040.1343-2484.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107040.1343-2484.XP_022301963%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/EKC24632%2E1.for.1337-2484.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107040.1337-2484.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107040.1337-2484.EKC24632%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/EKC24976%2E1.for.1343-2460.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107040.1343-2460.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107040.1343-2460.EKC24976%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/XP_022299949%2E1.for.1343-2484.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107040.1343-2484.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107040.1343-2484.XP_022299949%2E1.p.exonerate #-------------------------------# cleaning blastx... flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig107041 Length: 2382 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/0E/08/Contig107041//theVoid.Contig107041/0/Contig107041.0.all.rb -species all -dir /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/0E/08/Contig107041//theVoid.Contig107041/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107041.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/0E/08/Contig107041//theVoid.Contig107041/0/Contig107041.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107041.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/0E/08/Contig107041//theVoid.Contig107041/0/Contig107041.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107041.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/0E/08/Contig107041//theVoid.Contig107041/0/Contig107041.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107041.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/0E/08/Contig107041//theVoid.Contig107041/0/Contig107041.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107041.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/0E/08/Contig107041//theVoid.Contig107041/0/Contig107041.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107041.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/0E/08/Contig107041//theVoid.Contig107041/0/Contig107041.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107041.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/0E/08/Contig107041//theVoid.Contig107041/0/Contig107041.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107041.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/0E/08/Contig107041//theVoid.Contig107041/0/Contig107041.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107041.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/0E/08/Contig107041//theVoid.Contig107041/0/Contig107041.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107041.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/0E/08/Contig107041//theVoid.Contig107041/0/Contig107041.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/comp40055_c0_seq2.for.665-2132.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107041.665-2132.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107041.665-2132.comp40055_c0_seq2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/comp40055_c0_seq4.for.1030-2132.0.fasta -t /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107041.1030-2132.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107041.1030-2132.comp40055_c0_seq4.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:1 now processing 0 ...processing 0 of 2 ...processing 1 of 2 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107041.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/0E/08/Contig107041//theVoid.Contig107041/0/Contig107041.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107041.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/0E/08/Contig107041//theVoid.Contig107041/0/Contig107041.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107041.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/0E/08/Contig107041//theVoid.Contig107041/0/Contig107041.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107041.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/0E/08/Contig107041//theVoid.Contig107041/0/Contig107041.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107041.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/0E/08/Contig107041//theVoid.Contig107041/0/Contig107041.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107041.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/0E/08/Contig107041//theVoid.Contig107041/0/Contig107041.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107041.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/0E/08/Contig107041//theVoid.Contig107041/0/Contig107041.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107041.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/0E/08/Contig107041//theVoid.Contig107041/0/Contig107041.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107041.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/0E/08/Contig107041//theVoid.Contig107041/0/Contig107041.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.35/cctools-temp-t.35.0bxVX5/maker_XLYZO5/0/Contig107041.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.35/Olurida_v081.maker.output/Olurida_v081_datastore/0E/08/Contig107041//theVoid.Contig107041/0/Contig107041.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output Maker is now finished!!! Start_time: 1533652860 End_time: 1533653146 Elapsed: 286 ================================= Argument "2.53_01" isn't numeric in numeric ge (>=) at /usr/local/lib/x86_64-linux-gnu/perl/5.22.1/forks.pm line 1570. Unknown option: debug_size_limit STATUS: Parsing control files... STATUS: Processing and indexing input FASTA files... STATUS: Setting up database for any GFF3 input... A data structure will be created for you at: /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore To access files for individual sequences use the datastore index: /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_master_datastore_index.log STATUS: Now running MAKER... examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig190629 Length: 3767 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/F9/BD/Contig190629//theVoid.Contig190629/0/Contig190629.0.all.rb -species all -dir /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/F9/BD/Contig190629//theVoid.Contig190629/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190629.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/F9/BD/Contig190629//theVoid.Contig190629/0/Contig190629.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190629.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/F9/BD/Contig190629//theVoid.Contig190629/0/Contig190629.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190629.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/F9/BD/Contig190629//theVoid.Contig190629/0/Contig190629.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190629.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/F9/BD/Contig190629//theVoid.Contig190629/0/Contig190629.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190629.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/F9/BD/Contig190629//theVoid.Contig190629/0/Contig190629.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190629.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/F9/BD/Contig190629//theVoid.Contig190629/0/Contig190629.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190629.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/F9/BD/Contig190629//theVoid.Contig190629/0/Contig190629.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190629.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/F9/BD/Contig190629//theVoid.Contig190629/0/Contig190629.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190629.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/F9/BD/Contig190629//theVoid.Contig190629/0/Contig190629.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190629.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/F9/BD/Contig190629//theVoid.Contig190629/0/Contig190629.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/comp39048_c0_seq7.for.1-1302.0.fasta -t /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190629.1-1302.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190629.1-1302.comp39048_c0_seq7.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/comp39048_c0_seq2.for.1-1036.0.fasta -t /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190629.1-1036.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190629.1-1036.comp39048_c0_seq2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/comp39048_c0_seq3.for.1-1821.0.fasta -t /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190629.1-1821.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190629.1-1821.comp39048_c0_seq3.e.exonerate #-------------------------------# cleaning blastn... cleaning clusters.... total clusters:2 now processing 0 total clusters:2 now processing 0 flattening EST clusters doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190629.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/F9/BD/Contig190629//theVoid.Contig190629/0/Contig190629.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190629.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/F9/BD/Contig190629//theVoid.Contig190629/0/Contig190629.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190629.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/F9/BD/Contig190629//theVoid.Contig190629/0/Contig190629.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190629.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/F9/BD/Contig190629//theVoid.Contig190629/0/Contig190629.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190629.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/F9/BD/Contig190629//theVoid.Contig190629/0/Contig190629.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190629.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/F9/BD/Contig190629//theVoid.Contig190629/0/Contig190629.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190629.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/F9/BD/Contig190629//theVoid.Contig190629/0/Contig190629.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190629.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/F9/BD/Contig190629//theVoid.Contig190629/0/Contig190629.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190629.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/F9/BD/Contig190629//theVoid.Contig190629/0/Contig190629.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190629.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/F9/BD/Contig190629//theVoid.Contig190629/0/Contig190629.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig190630 Length: 1178 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/38/6E/Contig190630//theVoid.Contig190630/0/Contig190630.0.all.rb -species all -dir /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/38/6E/Contig190630//theVoid.Contig190630/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190630.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/38/6E/Contig190630//theVoid.Contig190630/0/Contig190630.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190630.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/38/6E/Contig190630//theVoid.Contig190630/0/Contig190630.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190630.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/38/6E/Contig190630//theVoid.Contig190630/0/Contig190630.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190630.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/38/6E/Contig190630//theVoid.Contig190630/0/Contig190630.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190630.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/38/6E/Contig190630//theVoid.Contig190630/0/Contig190630.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190630.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/38/6E/Contig190630//theVoid.Contig190630/0/Contig190630.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190630.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/38/6E/Contig190630//theVoid.Contig190630/0/Contig190630.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190630.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/38/6E/Contig190630//theVoid.Contig190630/0/Contig190630.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190630.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/38/6E/Contig190630//theVoid.Contig190630/0/Contig190630.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190630.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/38/6E/Contig190630//theVoid.Contig190630/0/Contig190630.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190630.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/38/6E/Contig190630//theVoid.Contig190630/0/Contig190630.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190630.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/38/6E/Contig190630//theVoid.Contig190630/0/Contig190630.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190630.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/38/6E/Contig190630//theVoid.Contig190630/0/Contig190630.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190630.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/38/6E/Contig190630//theVoid.Contig190630/0/Contig190630.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190630.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/38/6E/Contig190630//theVoid.Contig190630/0/Contig190630.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190630.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/38/6E/Contig190630//theVoid.Contig190630/0/Contig190630.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190630.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/38/6E/Contig190630//theVoid.Contig190630/0/Contig190630.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190630.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/38/6E/Contig190630//theVoid.Contig190630/0/Contig190630.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190630.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/38/6E/Contig190630//theVoid.Contig190630/0/Contig190630.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190630.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/38/6E/Contig190630//theVoid.Contig190630/0/Contig190630.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig190634 Length: 4997 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/41/38/Contig190634//theVoid.Contig190634/0/Contig190634.0.all.rb -species all -dir /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/41/38/Contig190634//theVoid.Contig190634/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190634.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/41/38/Contig190634//theVoid.Contig190634/0/Contig190634.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190634.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/41/38/Contig190634//theVoid.Contig190634/0/Contig190634.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190634.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/41/38/Contig190634//theVoid.Contig190634/0/Contig190634.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:12 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190634.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/41/38/Contig190634//theVoid.Contig190634/0/Contig190634.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190634.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/41/38/Contig190634//theVoid.Contig190634/0/Contig190634.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:9 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190634.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/41/38/Contig190634//theVoid.Contig190634/0/Contig190634.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:8 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190634.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/41/38/Contig190634//theVoid.Contig190634/0/Contig190634.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190634.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/41/38/Contig190634//theVoid.Contig190634/0/Contig190634.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190634.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/41/38/Contig190634//theVoid.Contig190634/0/Contig190634.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190634.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/41/38/Contig190634//theVoid.Contig190634/0/Contig190634.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:7 hits collecting blastn reports polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/comp23909_c0_seq1.for.1-515.0.fasta -t /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190634.1-515.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190634.1-515.comp23909_c0_seq1.e.exonerate #-------------------------------# cleaning blastn... flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190634.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/41/38/Contig190634//theVoid.Contig190634/0/Contig190634.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190634.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/41/38/Contig190634//theVoid.Contig190634/0/Contig190634.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190634.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/41/38/Contig190634//theVoid.Contig190634/0/Contig190634.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190634.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/41/38/Contig190634//theVoid.Contig190634/0/Contig190634.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190634.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/41/38/Contig190634//theVoid.Contig190634/0/Contig190634.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190634.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/41/38/Contig190634//theVoid.Contig190634/0/Contig190634.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190634.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/41/38/Contig190634//theVoid.Contig190634/0/Contig190634.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190634.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/41/38/Contig190634//theVoid.Contig190634/0/Contig190634.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190634.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/41/38/Contig190634//theVoid.Contig190634/0/Contig190634.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190634.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/41/38/Contig190634//theVoid.Contig190634/0/Contig190634.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig190639 Length: 12514 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/77/70/Contig190639//theVoid.Contig190639/0/Contig190639.0.all.rb -species all -dir /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/77/70/Contig190639//theVoid.Contig190639/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190639.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/77/70/Contig190639//theVoid.Contig190639/0/Contig190639.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190639.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/77/70/Contig190639//theVoid.Contig190639/0/Contig190639.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190639.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/77/70/Contig190639//theVoid.Contig190639/0/Contig190639.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190639.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/77/70/Contig190639//theVoid.Contig190639/0/Contig190639.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190639.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/77/70/Contig190639//theVoid.Contig190639/0/Contig190639.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190639.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/77/70/Contig190639//theVoid.Contig190639/0/Contig190639.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190639.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/77/70/Contig190639//theVoid.Contig190639/0/Contig190639.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190639.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/77/70/Contig190639//theVoid.Contig190639/0/Contig190639.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190639.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/77/70/Contig190639//theVoid.Contig190639/0/Contig190639.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190639.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/77/70/Contig190639//theVoid.Contig190639/0/Contig190639.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/comp42389_c2_seq1.for.1-714.0.fasta -t /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190639.1-714.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190639.1-714.comp42389_c2_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/comp40265_c0_seq5.for.168-1604.0.fasta -t /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190639.168-1604.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190639.168-1604.comp40265_c0_seq5.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/comp40265_c0_seq7.for.54-1604.0.fasta -t /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190639.54-1604.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190639.54-1604.comp40265_c0_seq7.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/comp43035_c2_seq18.for.876-2165.0.fasta -t /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190639.876-2165.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190639.876-2165.comp43035_c2_seq18.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/comp43035_c2_seq14.for.876-2218.0.fasta -t /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190639.876-2218.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190639.876-2218.comp43035_c2_seq14.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:3 now processing 0 total clusters:3 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:3 now processing 0 ...processing 0 of 2 ...processing 1 of 2 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190639.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/77/70/Contig190639//theVoid.Contig190639/0/Contig190639.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:3 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190639.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/77/70/Contig190639//theVoid.Contig190639/0/Contig190639.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190639.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/77/70/Contig190639//theVoid.Contig190639/0/Contig190639.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190639.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/77/70/Contig190639//theVoid.Contig190639/0/Contig190639.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190639.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/77/70/Contig190639//theVoid.Contig190639/0/Contig190639.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190639.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/77/70/Contig190639//theVoid.Contig190639/0/Contig190639.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:3 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190639.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/77/70/Contig190639//theVoid.Contig190639/0/Contig190639.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190639.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/77/70/Contig190639//theVoid.Contig190639/0/Contig190639.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:3 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190639.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/77/70/Contig190639//theVoid.Contig190639/0/Contig190639.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:3 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190639.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/77/70/Contig190639//theVoid.Contig190639/0/Contig190639.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:3 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/XP_022321255%2E1.for.10942-11915.0.fasta -t /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190639.10942-11915.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190639.10942-11915.XP_022321255%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/EKC35318%2E1.for.10915-11918.0.fasta -t /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190639.10915-11918.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190639.10915-11918.EKC35318%2E1.p.exonerate #-------------------------------# cleaning blastx... flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig190640 Length: 5180 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/D4/E6/Contig190640//theVoid.Contig190640/0/Contig190640.0.all.rb -species all -dir /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/D4/E6/Contig190640//theVoid.Contig190640/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190640.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/D4/E6/Contig190640//theVoid.Contig190640/0/Contig190640.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190640.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/D4/E6/Contig190640//theVoid.Contig190640/0/Contig190640.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190640.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/D4/E6/Contig190640//theVoid.Contig190640/0/Contig190640.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190640.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/D4/E6/Contig190640//theVoid.Contig190640/0/Contig190640.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:7 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190640.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/D4/E6/Contig190640//theVoid.Contig190640/0/Contig190640.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190640.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/D4/E6/Contig190640//theVoid.Contig190640/0/Contig190640.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:7 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190640.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/D4/E6/Contig190640//theVoid.Contig190640/0/Contig190640.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190640.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/D4/E6/Contig190640//theVoid.Contig190640/0/Contig190640.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:7 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190640.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/D4/E6/Contig190640//theVoid.Contig190640/0/Contig190640.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190640.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/D4/E6/Contig190640//theVoid.Contig190640/0/Contig190640.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:6 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190640.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/D4/E6/Contig190640//theVoid.Contig190640/0/Contig190640.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190640.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/D4/E6/Contig190640//theVoid.Contig190640/0/Contig190640.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190640.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/D4/E6/Contig190640//theVoid.Contig190640/0/Contig190640.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190640.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/D4/E6/Contig190640//theVoid.Contig190640/0/Contig190640.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190640.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/D4/E6/Contig190640//theVoid.Contig190640/0/Contig190640.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190640.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/D4/E6/Contig190640//theVoid.Contig190640/0/Contig190640.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190640.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/D4/E6/Contig190640//theVoid.Contig190640/0/Contig190640.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190640.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/D4/E6/Contig190640//theVoid.Contig190640/0/Contig190640.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190640.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/D4/E6/Contig190640//theVoid.Contig190640/0/Contig190640.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190640.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/D4/E6/Contig190640//theVoid.Contig190640/0/Contig190640.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig190645 Length: 2174 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/C3/C3/Contig190645//theVoid.Contig190645/0/Contig190645.0.all.rb -species all -dir /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/C3/C3/Contig190645//theVoid.Contig190645/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190645.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/C3/C3/Contig190645//theVoid.Contig190645/0/Contig190645.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190645.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/C3/C3/Contig190645//theVoid.Contig190645/0/Contig190645.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190645.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/C3/C3/Contig190645//theVoid.Contig190645/0/Contig190645.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190645.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/C3/C3/Contig190645//theVoid.Contig190645/0/Contig190645.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190645.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/C3/C3/Contig190645//theVoid.Contig190645/0/Contig190645.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190645.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/C3/C3/Contig190645//theVoid.Contig190645/0/Contig190645.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190645.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/C3/C3/Contig190645//theVoid.Contig190645/0/Contig190645.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190645.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/C3/C3/Contig190645//theVoid.Contig190645/0/Contig190645.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190645.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/C3/C3/Contig190645//theVoid.Contig190645/0/Contig190645.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190645.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/C3/C3/Contig190645//theVoid.Contig190645/0/Contig190645.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190645.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/C3/C3/Contig190645//theVoid.Contig190645/0/Contig190645.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190645.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/C3/C3/Contig190645//theVoid.Contig190645/0/Contig190645.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190645.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/C3/C3/Contig190645//theVoid.Contig190645/0/Contig190645.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190645.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/C3/C3/Contig190645//theVoid.Contig190645/0/Contig190645.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190645.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/C3/C3/Contig190645//theVoid.Contig190645/0/Contig190645.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190645.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/C3/C3/Contig190645//theVoid.Contig190645/0/Contig190645.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190645.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/C3/C3/Contig190645//theVoid.Contig190645/0/Contig190645.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190645.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/C3/C3/Contig190645//theVoid.Contig190645/0/Contig190645.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190645.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/C3/C3/Contig190645//theVoid.Contig190645/0/Contig190645.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190645.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/C3/C3/Contig190645//theVoid.Contig190645/0/Contig190645.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig190648 Length: 1042 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/FC/86/Contig190648//theVoid.Contig190648/0/Contig190648.0.all.rb -species all -dir /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/FC/86/Contig190648//theVoid.Contig190648/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190648.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/FC/86/Contig190648//theVoid.Contig190648/0/Contig190648.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190648.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/FC/86/Contig190648//theVoid.Contig190648/0/Contig190648.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190648.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/FC/86/Contig190648//theVoid.Contig190648/0/Contig190648.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190648.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/FC/86/Contig190648//theVoid.Contig190648/0/Contig190648.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190648.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/FC/86/Contig190648//theVoid.Contig190648/0/Contig190648.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190648.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/FC/86/Contig190648//theVoid.Contig190648/0/Contig190648.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190648.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/FC/86/Contig190648//theVoid.Contig190648/0/Contig190648.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190648.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/FC/86/Contig190648//theVoid.Contig190648/0/Contig190648.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190648.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/FC/86/Contig190648//theVoid.Contig190648/0/Contig190648.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190648.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/FC/86/Contig190648//theVoid.Contig190648/0/Contig190648.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190648.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/FC/86/Contig190648//theVoid.Contig190648/0/Contig190648.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190648.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/FC/86/Contig190648//theVoid.Contig190648/0/Contig190648.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190648.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/FC/86/Contig190648//theVoid.Contig190648/0/Contig190648.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190648.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/FC/86/Contig190648//theVoid.Contig190648/0/Contig190648.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190648.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/FC/86/Contig190648//theVoid.Contig190648/0/Contig190648.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190648.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/FC/86/Contig190648//theVoid.Contig190648/0/Contig190648.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190648.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/FC/86/Contig190648//theVoid.Contig190648/0/Contig190648.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190648.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/FC/86/Contig190648//theVoid.Contig190648/0/Contig190648.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190648.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/FC/86/Contig190648//theVoid.Contig190648/0/Contig190648.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190648.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/FC/86/Contig190648//theVoid.Contig190648/0/Contig190648.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig190651 Length: 6707 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/22/28/Contig190651//theVoid.Contig190651/0/Contig190651.0.all.rb -species all -dir /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/22/28/Contig190651//theVoid.Contig190651/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190651.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/22/28/Contig190651//theVoid.Contig190651/0/Contig190651.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190651.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/22/28/Contig190651//theVoid.Contig190651/0/Contig190651.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190651.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/22/28/Contig190651//theVoid.Contig190651/0/Contig190651.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190651.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/22/28/Contig190651//theVoid.Contig190651/0/Contig190651.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190651.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/22/28/Contig190651//theVoid.Contig190651/0/Contig190651.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190651.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/22/28/Contig190651//theVoid.Contig190651/0/Contig190651.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190651.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/22/28/Contig190651//theVoid.Contig190651/0/Contig190651.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190651.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/22/28/Contig190651//theVoid.Contig190651/0/Contig190651.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190651.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/22/28/Contig190651//theVoid.Contig190651/0/Contig190651.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190651.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/22/28/Contig190651//theVoid.Contig190651/0/Contig190651.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/comp37904_c7_seq5.for.5180-6140.0.fasta -t /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190651.5180-6140.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190651.5180-6140.comp37904_c7_seq5.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/comp37904_c4_seq1.for.5036-6001.0.fasta -t /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190651.5036-6001.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190651.5036-6001.comp37904_c4_seq1.e.exonerate #-------------------------------# cleaning blastn... flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190651.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/22/28/Contig190651//theVoid.Contig190651/0/Contig190651.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190651.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/22/28/Contig190651//theVoid.Contig190651/0/Contig190651.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190651.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/22/28/Contig190651//theVoid.Contig190651/0/Contig190651.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190651.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/22/28/Contig190651//theVoid.Contig190651/0/Contig190651.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190651.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/22/28/Contig190651//theVoid.Contig190651/0/Contig190651.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190651.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/22/28/Contig190651//theVoid.Contig190651/0/Contig190651.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190651.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/22/28/Contig190651//theVoid.Contig190651/0/Contig190651.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190651.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/22/28/Contig190651//theVoid.Contig190651/0/Contig190651.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190651.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/22/28/Contig190651//theVoid.Contig190651/0/Contig190651.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190651.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/22/28/Contig190651//theVoid.Contig190651/0/Contig190651.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig190653 Length: 2975 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/B2/74/Contig190653//theVoid.Contig190653/0/Contig190653.0.all.rb -species all -dir /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/B2/74/Contig190653//theVoid.Contig190653/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190653.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/B2/74/Contig190653//theVoid.Contig190653/0/Contig190653.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190653.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/B2/74/Contig190653//theVoid.Contig190653/0/Contig190653.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190653.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/B2/74/Contig190653//theVoid.Contig190653/0/Contig190653.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190653.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/B2/74/Contig190653//theVoid.Contig190653/0/Contig190653.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190653.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/B2/74/Contig190653//theVoid.Contig190653/0/Contig190653.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190653.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/B2/74/Contig190653//theVoid.Contig190653/0/Contig190653.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190653.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/B2/74/Contig190653//theVoid.Contig190653/0/Contig190653.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190653.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/B2/74/Contig190653//theVoid.Contig190653/0/Contig190653.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190653.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/B2/74/Contig190653//theVoid.Contig190653/0/Contig190653.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190653.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/B2/74/Contig190653//theVoid.Contig190653/0/Contig190653.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190653.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/B2/74/Contig190653//theVoid.Contig190653/0/Contig190653.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190653.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/B2/74/Contig190653//theVoid.Contig190653/0/Contig190653.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190653.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/B2/74/Contig190653//theVoid.Contig190653/0/Contig190653.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190653.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/B2/74/Contig190653//theVoid.Contig190653/0/Contig190653.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190653.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/B2/74/Contig190653//theVoid.Contig190653/0/Contig190653.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190653.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/B2/74/Contig190653//theVoid.Contig190653/0/Contig190653.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190653.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/B2/74/Contig190653//theVoid.Contig190653/0/Contig190653.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190653.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/B2/74/Contig190653//theVoid.Contig190653/0/Contig190653.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190653.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/B2/74/Contig190653//theVoid.Contig190653/0/Contig190653.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190653.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/B2/74/Contig190653//theVoid.Contig190653/0/Contig190653.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig190656 Length: 8503 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/F6/43/Contig190656//theVoid.Contig190656/0/Contig190656.0.all.rb -species all -dir /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/F6/43/Contig190656//theVoid.Contig190656/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190656.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/F6/43/Contig190656//theVoid.Contig190656/0/Contig190656.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190656.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/F6/43/Contig190656//theVoid.Contig190656/0/Contig190656.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190656.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/F6/43/Contig190656//theVoid.Contig190656/0/Contig190656.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190656.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/F6/43/Contig190656//theVoid.Contig190656/0/Contig190656.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190656.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/F6/43/Contig190656//theVoid.Contig190656/0/Contig190656.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190656.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/F6/43/Contig190656//theVoid.Contig190656/0/Contig190656.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190656.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/F6/43/Contig190656//theVoid.Contig190656/0/Contig190656.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190656.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/F6/43/Contig190656//theVoid.Contig190656/0/Contig190656.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190656.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/F6/43/Contig190656//theVoid.Contig190656/0/Contig190656.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190656.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/F6/43/Contig190656//theVoid.Contig190656/0/Contig190656.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/comp33744_c0_seq1.for.3754-8503.0.fasta -t /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190656.3754-8503.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190656.3754-8503.comp33744_c0_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/comp33744_c0_seq2.for.3754-8503.0.fasta -t /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190656.3754-8503.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190656.3754-8503.comp33744_c0_seq2.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:7 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 total clusters:7 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:7 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:7 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190656.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/F6/43/Contig190656//theVoid.Contig190656/0/Contig190656.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190656.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/F6/43/Contig190656//theVoid.Contig190656/0/Contig190656.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190656.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/F6/43/Contig190656//theVoid.Contig190656/0/Contig190656.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190656.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/F6/43/Contig190656//theVoid.Contig190656/0/Contig190656.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190656.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/F6/43/Contig190656//theVoid.Contig190656/0/Contig190656.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190656.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/F6/43/Contig190656//theVoid.Contig190656/0/Contig190656.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190656.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/F6/43/Contig190656//theVoid.Contig190656/0/Contig190656.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190656.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/F6/43/Contig190656//theVoid.Contig190656/0/Contig190656.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190656.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/F6/43/Contig190656//theVoid.Contig190656/0/Contig190656.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.40/cctools-temp-t.40.Um289t/maker_9ilalD/0/Contig190656.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.40/Olurida_v081.maker.output/Olurida_v081_datastore/F6/43/Contig190656//theVoid.Contig190656/0/Contig190656.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output Maker is now finished!!! Start_time: 1533652860 End_time: 1533653151 Elapsed: 291 ================================= Argument "2.53_01" isn't numeric in numeric ge (>=) at /usr/local/lib/x86_64-linux-gnu/perl/5.22.1/forks.pm line 1570. Unknown option: debug_size_limit STATUS: Parsing control files... STATUS: Processing and indexing input FASTA files... STATUS: Setting up database for any GFF3 input... A data structure will be created for you at: /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore To access files for individual sequences use the datastore index: /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_master_datastore_index.log STATUS: Now running MAKER... examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig146353 Length: 1770 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/F6/41/Contig146353//theVoid.Contig146353/0/Contig146353.0.all.rb -species all -dir /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/F6/41/Contig146353//theVoid.Contig146353/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146353.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/F6/41/Contig146353//theVoid.Contig146353/0/Contig146353.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146353.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/F6/41/Contig146353//theVoid.Contig146353/0/Contig146353.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146353.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/F6/41/Contig146353//theVoid.Contig146353/0/Contig146353.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146353.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/F6/41/Contig146353//theVoid.Contig146353/0/Contig146353.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146353.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/F6/41/Contig146353//theVoid.Contig146353/0/Contig146353.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146353.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/F6/41/Contig146353//theVoid.Contig146353/0/Contig146353.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146353.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/F6/41/Contig146353//theVoid.Contig146353/0/Contig146353.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146353.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/F6/41/Contig146353//theVoid.Contig146353/0/Contig146353.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146353.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/F6/41/Contig146353//theVoid.Contig146353/0/Contig146353.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146353.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/F6/41/Contig146353//theVoid.Contig146353/0/Contig146353.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/comp39281_c0_seq3.for.289-1229.0.fasta -t /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146353.289-1229.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146353.289-1229.comp39281_c0_seq3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/comp39281_c0_seq1.for.289-1265.0.fasta -t /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146353.289-1265.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146353.289-1265.comp39281_c0_seq1.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:1 now processing 0 ...processing 0 of 2 ...processing 1 of 2 flattening EST clusters doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146353.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/F6/41/Contig146353//theVoid.Contig146353/0/Contig146353.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146353.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/F6/41/Contig146353//theVoid.Contig146353/0/Contig146353.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146353.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/F6/41/Contig146353//theVoid.Contig146353/0/Contig146353.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146353.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/F6/41/Contig146353//theVoid.Contig146353/0/Contig146353.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146353.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/F6/41/Contig146353//theVoid.Contig146353/0/Contig146353.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146353.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/F6/41/Contig146353//theVoid.Contig146353/0/Contig146353.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146353.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/F6/41/Contig146353//theVoid.Contig146353/0/Contig146353.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146353.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/F6/41/Contig146353//theVoid.Contig146353/0/Contig146353.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146353.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/F6/41/Contig146353//theVoid.Contig146353/0/Contig146353.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146353.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/F6/41/Contig146353//theVoid.Contig146353/0/Contig146353.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig146354 Length: 1491 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/D6/FA/Contig146354//theVoid.Contig146354/0/Contig146354.0.all.rb -species all -dir /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/D6/FA/Contig146354//theVoid.Contig146354/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146354.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/D6/FA/Contig146354//theVoid.Contig146354/0/Contig146354.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146354.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/D6/FA/Contig146354//theVoid.Contig146354/0/Contig146354.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146354.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/D6/FA/Contig146354//theVoid.Contig146354/0/Contig146354.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146354.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/D6/FA/Contig146354//theVoid.Contig146354/0/Contig146354.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146354.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/D6/FA/Contig146354//theVoid.Contig146354/0/Contig146354.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146354.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/D6/FA/Contig146354//theVoid.Contig146354/0/Contig146354.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146354.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/D6/FA/Contig146354//theVoid.Contig146354/0/Contig146354.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146354.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/D6/FA/Contig146354//theVoid.Contig146354/0/Contig146354.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146354.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/D6/FA/Contig146354//theVoid.Contig146354/0/Contig146354.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146354.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/D6/FA/Contig146354//theVoid.Contig146354/0/Contig146354.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146354.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/D6/FA/Contig146354//theVoid.Contig146354/0/Contig146354.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146354.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/D6/FA/Contig146354//theVoid.Contig146354/0/Contig146354.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146354.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/D6/FA/Contig146354//theVoid.Contig146354/0/Contig146354.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146354.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/D6/FA/Contig146354//theVoid.Contig146354/0/Contig146354.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146354.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/D6/FA/Contig146354//theVoid.Contig146354/0/Contig146354.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146354.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/D6/FA/Contig146354//theVoid.Contig146354/0/Contig146354.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146354.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/D6/FA/Contig146354//theVoid.Contig146354/0/Contig146354.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146354.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/D6/FA/Contig146354//theVoid.Contig146354/0/Contig146354.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146354.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/D6/FA/Contig146354//theVoid.Contig146354/0/Contig146354.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146354.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/D6/FA/Contig146354//theVoid.Contig146354/0/Contig146354.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig146356 Length: 1046 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/62/2E/Contig146356//theVoid.Contig146356/0/Contig146356.0.all.rb -species all -dir /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/62/2E/Contig146356//theVoid.Contig146356/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146356.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/62/2E/Contig146356//theVoid.Contig146356/0/Contig146356.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146356.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/62/2E/Contig146356//theVoid.Contig146356/0/Contig146356.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146356.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/62/2E/Contig146356//theVoid.Contig146356/0/Contig146356.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146356.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/62/2E/Contig146356//theVoid.Contig146356/0/Contig146356.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146356.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/62/2E/Contig146356//theVoid.Contig146356/0/Contig146356.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146356.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/62/2E/Contig146356//theVoid.Contig146356/0/Contig146356.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146356.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/62/2E/Contig146356//theVoid.Contig146356/0/Contig146356.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146356.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/62/2E/Contig146356//theVoid.Contig146356/0/Contig146356.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146356.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/62/2E/Contig146356//theVoid.Contig146356/0/Contig146356.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146356.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/62/2E/Contig146356//theVoid.Contig146356/0/Contig146356.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/comp43107_c3_seq4.for.1-558.0.fasta -t /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146356.1-558.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146356.1-558.comp43107_c3_seq4.e.exonerate #-------------------------------# cleaning blastn... flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146356.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/62/2E/Contig146356//theVoid.Contig146356/0/Contig146356.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146356.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/62/2E/Contig146356//theVoid.Contig146356/0/Contig146356.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146356.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/62/2E/Contig146356//theVoid.Contig146356/0/Contig146356.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146356.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/62/2E/Contig146356//theVoid.Contig146356/0/Contig146356.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146356.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/62/2E/Contig146356//theVoid.Contig146356/0/Contig146356.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146356.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/62/2E/Contig146356//theVoid.Contig146356/0/Contig146356.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146356.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/62/2E/Contig146356//theVoid.Contig146356/0/Contig146356.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146356.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/62/2E/Contig146356//theVoid.Contig146356/0/Contig146356.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146356.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/62/2E/Contig146356//theVoid.Contig146356/0/Contig146356.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146356.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/62/2E/Contig146356//theVoid.Contig146356/0/Contig146356.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig146357 Length: 1210 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/AD/BD/Contig146357//theVoid.Contig146357/0/Contig146357.0.all.rb -species all -dir /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/AD/BD/Contig146357//theVoid.Contig146357/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146357.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/AD/BD/Contig146357//theVoid.Contig146357/0/Contig146357.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146357.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/AD/BD/Contig146357//theVoid.Contig146357/0/Contig146357.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146357.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/AD/BD/Contig146357//theVoid.Contig146357/0/Contig146357.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146357.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/AD/BD/Contig146357//theVoid.Contig146357/0/Contig146357.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146357.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/AD/BD/Contig146357//theVoid.Contig146357/0/Contig146357.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146357.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/AD/BD/Contig146357//theVoid.Contig146357/0/Contig146357.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146357.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/AD/BD/Contig146357//theVoid.Contig146357/0/Contig146357.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146357.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/AD/BD/Contig146357//theVoid.Contig146357/0/Contig146357.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146357.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/AD/BD/Contig146357//theVoid.Contig146357/0/Contig146357.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146357.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/AD/BD/Contig146357//theVoid.Contig146357/0/Contig146357.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146357.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/AD/BD/Contig146357//theVoid.Contig146357/0/Contig146357.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146357.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/AD/BD/Contig146357//theVoid.Contig146357/0/Contig146357.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146357.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/AD/BD/Contig146357//theVoid.Contig146357/0/Contig146357.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146357.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/AD/BD/Contig146357//theVoid.Contig146357/0/Contig146357.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146357.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/AD/BD/Contig146357//theVoid.Contig146357/0/Contig146357.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146357.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/AD/BD/Contig146357//theVoid.Contig146357/0/Contig146357.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146357.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/AD/BD/Contig146357//theVoid.Contig146357/0/Contig146357.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146357.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/AD/BD/Contig146357//theVoid.Contig146357/0/Contig146357.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146357.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/AD/BD/Contig146357//theVoid.Contig146357/0/Contig146357.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146357.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/AD/BD/Contig146357//theVoid.Contig146357/0/Contig146357.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig146358 Length: 1399 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/8D/02/Contig146358//theVoid.Contig146358/0/Contig146358.0.all.rb -species all -dir /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/8D/02/Contig146358//theVoid.Contig146358/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146358.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/8D/02/Contig146358//theVoid.Contig146358/0/Contig146358.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146358.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/8D/02/Contig146358//theVoid.Contig146358/0/Contig146358.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146358.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/8D/02/Contig146358//theVoid.Contig146358/0/Contig146358.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146358.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/8D/02/Contig146358//theVoid.Contig146358/0/Contig146358.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146358.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/8D/02/Contig146358//theVoid.Contig146358/0/Contig146358.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146358.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/8D/02/Contig146358//theVoid.Contig146358/0/Contig146358.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146358.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/8D/02/Contig146358//theVoid.Contig146358/0/Contig146358.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146358.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/8D/02/Contig146358//theVoid.Contig146358/0/Contig146358.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146358.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/8D/02/Contig146358//theVoid.Contig146358/0/Contig146358.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146358.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/8D/02/Contig146358//theVoid.Contig146358/0/Contig146358.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146358.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/8D/02/Contig146358//theVoid.Contig146358/0/Contig146358.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146358.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/8D/02/Contig146358//theVoid.Contig146358/0/Contig146358.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146358.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/8D/02/Contig146358//theVoid.Contig146358/0/Contig146358.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146358.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/8D/02/Contig146358//theVoid.Contig146358/0/Contig146358.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146358.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/8D/02/Contig146358//theVoid.Contig146358/0/Contig146358.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146358.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/8D/02/Contig146358//theVoid.Contig146358/0/Contig146358.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146358.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/8D/02/Contig146358//theVoid.Contig146358/0/Contig146358.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146358.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/8D/02/Contig146358//theVoid.Contig146358/0/Contig146358.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146358.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/8D/02/Contig146358//theVoid.Contig146358/0/Contig146358.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146358.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/8D/02/Contig146358//theVoid.Contig146358/0/Contig146358.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig146360 Length: 1435 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/D0/1A/Contig146360//theVoid.Contig146360/0/Contig146360.0.all.rb -species all -dir /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/D0/1A/Contig146360//theVoid.Contig146360/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146360.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/D0/1A/Contig146360//theVoid.Contig146360/0/Contig146360.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146360.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/D0/1A/Contig146360//theVoid.Contig146360/0/Contig146360.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146360.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/D0/1A/Contig146360//theVoid.Contig146360/0/Contig146360.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146360.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/D0/1A/Contig146360//theVoid.Contig146360/0/Contig146360.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146360.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/D0/1A/Contig146360//theVoid.Contig146360/0/Contig146360.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146360.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/D0/1A/Contig146360//theVoid.Contig146360/0/Contig146360.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146360.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/D0/1A/Contig146360//theVoid.Contig146360/0/Contig146360.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146360.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/D0/1A/Contig146360//theVoid.Contig146360/0/Contig146360.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146360.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/D0/1A/Contig146360//theVoid.Contig146360/0/Contig146360.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146360.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/D0/1A/Contig146360//theVoid.Contig146360/0/Contig146360.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146360.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/D0/1A/Contig146360//theVoid.Contig146360/0/Contig146360.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146360.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/D0/1A/Contig146360//theVoid.Contig146360/0/Contig146360.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146360.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/D0/1A/Contig146360//theVoid.Contig146360/0/Contig146360.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146360.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/D0/1A/Contig146360//theVoid.Contig146360/0/Contig146360.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146360.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/D0/1A/Contig146360//theVoid.Contig146360/0/Contig146360.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146360.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/D0/1A/Contig146360//theVoid.Contig146360/0/Contig146360.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146360.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/D0/1A/Contig146360//theVoid.Contig146360/0/Contig146360.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146360.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/D0/1A/Contig146360//theVoid.Contig146360/0/Contig146360.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146360.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/D0/1A/Contig146360//theVoid.Contig146360/0/Contig146360.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146360.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/D0/1A/Contig146360//theVoid.Contig146360/0/Contig146360.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig146361 Length: 1081 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/55/09/Contig146361//theVoid.Contig146361/0/Contig146361.0.all.rb -species all -dir /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/55/09/Contig146361//theVoid.Contig146361/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146361.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/55/09/Contig146361//theVoid.Contig146361/0/Contig146361.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146361.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/55/09/Contig146361//theVoid.Contig146361/0/Contig146361.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146361.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/55/09/Contig146361//theVoid.Contig146361/0/Contig146361.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146361.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/55/09/Contig146361//theVoid.Contig146361/0/Contig146361.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146361.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/55/09/Contig146361//theVoid.Contig146361/0/Contig146361.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146361.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/55/09/Contig146361//theVoid.Contig146361/0/Contig146361.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146361.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/55/09/Contig146361//theVoid.Contig146361/0/Contig146361.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146361.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/55/09/Contig146361//theVoid.Contig146361/0/Contig146361.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146361.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/55/09/Contig146361//theVoid.Contig146361/0/Contig146361.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146361.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/55/09/Contig146361//theVoid.Contig146361/0/Contig146361.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146361.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/55/09/Contig146361//theVoid.Contig146361/0/Contig146361.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146361.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/55/09/Contig146361//theVoid.Contig146361/0/Contig146361.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146361.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/55/09/Contig146361//theVoid.Contig146361/0/Contig146361.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146361.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/55/09/Contig146361//theVoid.Contig146361/0/Contig146361.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146361.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/55/09/Contig146361//theVoid.Contig146361/0/Contig146361.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146361.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/55/09/Contig146361//theVoid.Contig146361/0/Contig146361.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146361.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/55/09/Contig146361//theVoid.Contig146361/0/Contig146361.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146361.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/55/09/Contig146361//theVoid.Contig146361/0/Contig146361.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146361.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/55/09/Contig146361//theVoid.Contig146361/0/Contig146361.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146361.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/55/09/Contig146361//theVoid.Contig146361/0/Contig146361.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig146362 Length: 1695 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/79/49/Contig146362//theVoid.Contig146362/0/Contig146362.0.all.rb -species all -dir /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/79/49/Contig146362//theVoid.Contig146362/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146362.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/79/49/Contig146362//theVoid.Contig146362/0/Contig146362.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146362.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/79/49/Contig146362//theVoid.Contig146362/0/Contig146362.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146362.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/79/49/Contig146362//theVoid.Contig146362/0/Contig146362.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146362.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/79/49/Contig146362//theVoid.Contig146362/0/Contig146362.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146362.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/79/49/Contig146362//theVoid.Contig146362/0/Contig146362.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146362.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/79/49/Contig146362//theVoid.Contig146362/0/Contig146362.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146362.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/79/49/Contig146362//theVoid.Contig146362/0/Contig146362.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146362.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/79/49/Contig146362//theVoid.Contig146362/0/Contig146362.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146362.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/79/49/Contig146362//theVoid.Contig146362/0/Contig146362.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146362.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/79/49/Contig146362//theVoid.Contig146362/0/Contig146362.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146362.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/79/49/Contig146362//theVoid.Contig146362/0/Contig146362.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146362.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/79/49/Contig146362//theVoid.Contig146362/0/Contig146362.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146362.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/79/49/Contig146362//theVoid.Contig146362/0/Contig146362.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146362.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/79/49/Contig146362//theVoid.Contig146362/0/Contig146362.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146362.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/79/49/Contig146362//theVoid.Contig146362/0/Contig146362.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146362.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/79/49/Contig146362//theVoid.Contig146362/0/Contig146362.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146362.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/79/49/Contig146362//theVoid.Contig146362/0/Contig146362.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146362.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/79/49/Contig146362//theVoid.Contig146362/0/Contig146362.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146362.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/79/49/Contig146362//theVoid.Contig146362/0/Contig146362.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146362.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/79/49/Contig146362//theVoid.Contig146362/0/Contig146362.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig146364 Length: 9141 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/CB/61/Contig146364//theVoid.Contig146364/0/Contig146364.0.all.rb -species all -dir /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/CB/61/Contig146364//theVoid.Contig146364/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146364.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/CB/61/Contig146364//theVoid.Contig146364/0/Contig146364.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146364.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/CB/61/Contig146364//theVoid.Contig146364/0/Contig146364.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146364.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/CB/61/Contig146364//theVoid.Contig146364/0/Contig146364.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146364.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/CB/61/Contig146364//theVoid.Contig146364/0/Contig146364.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146364.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/CB/61/Contig146364//theVoid.Contig146364/0/Contig146364.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146364.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/CB/61/Contig146364//theVoid.Contig146364/0/Contig146364.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146364.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/CB/61/Contig146364//theVoid.Contig146364/0/Contig146364.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146364.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/CB/61/Contig146364//theVoid.Contig146364/0/Contig146364.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146364.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/CB/61/Contig146364//theVoid.Contig146364/0/Contig146364.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146364.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/CB/61/Contig146364//theVoid.Contig146364/0/Contig146364.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146364.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/CB/61/Contig146364//theVoid.Contig146364/0/Contig146364.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146364.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/CB/61/Contig146364//theVoid.Contig146364/0/Contig146364.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146364.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/CB/61/Contig146364//theVoid.Contig146364/0/Contig146364.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146364.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/CB/61/Contig146364//theVoid.Contig146364/0/Contig146364.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146364.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/CB/61/Contig146364//theVoid.Contig146364/0/Contig146364.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146364.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/CB/61/Contig146364//theVoid.Contig146364/0/Contig146364.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146364.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/CB/61/Contig146364//theVoid.Contig146364/0/Contig146364.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146364.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/CB/61/Contig146364//theVoid.Contig146364/0/Contig146364.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146364.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/CB/61/Contig146364//theVoid.Contig146364/0/Contig146364.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146364.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/CB/61/Contig146364//theVoid.Contig146364/0/Contig146364.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/XP_022307701%2E1.for.3372-4740.0.fasta -t /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146364.3372-4740.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146364.3372-4740.XP_022307701%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/XP_022310998%2E1.for.3372-4740.0.fasta -t /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146364.3372-4740.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146364.3372-4740.XP_022310998%2E1.p.exonerate #-------------------------------# cleaning blastx... flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig146366 Length: 11477 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/5A/D4/Contig146366//theVoid.Contig146366/0/Contig146366.0.all.rb -species all -dir /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/5A/D4/Contig146366//theVoid.Contig146366/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/5A/D4/Contig146366//theVoid.Contig146366/0/Contig146366.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/5A/D4/Contig146366//theVoid.Contig146366/0/Contig146366.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/5A/D4/Contig146366//theVoid.Contig146366/0/Contig146366.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/5A/D4/Contig146366//theVoid.Contig146366/0/Contig146366.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/5A/D4/Contig146366//theVoid.Contig146366/0/Contig146366.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/5A/D4/Contig146366//theVoid.Contig146366/0/Contig146366.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/5A/D4/Contig146366//theVoid.Contig146366/0/Contig146366.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/5A/D4/Contig146366//theVoid.Contig146366/0/Contig146366.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/5A/D4/Contig146366//theVoid.Contig146366/0/Contig146366.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/5A/D4/Contig146366//theVoid.Contig146366/0/Contig146366.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/comp42632_c0_seq6.for.330-3621.0.fasta -t /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.330-3621.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.330-3621.comp42632_c0_seq6.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/comp20304_c0_seq1.for.3237-4589.0.fasta -t /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.3237-4589.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.3237-4589.comp20304_c0_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/comp42632_c0_seq9.for.235-3621.0.fasta -t /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.235-3621.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.235-3621.comp42632_c0_seq9.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/comp42632_c0_seq10.for.330-3888.0.fasta -t /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.330-3888.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.330-3888.comp42632_c0_seq10.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/comp42632_c0_seq1.for.2222-3289.0.fasta -t /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.2222-3289.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.2222-3289.comp42632_c0_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/comp42632_c0_seq11.for.235-4085.0.fasta -t /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.235-4085.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.235-4085.comp42632_c0_seq11.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/comp42632_c0_seq2.for.305-3621.0.fasta -t /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.305-3621.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.305-3621.comp42632_c0_seq2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/comp42632_c0_seq12.for.2009-3575.0.fasta -t /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.2009-3575.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.2009-3575.comp42632_c0_seq12.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/comp42632_c0_seq3.for.330-4085.0.fasta -t /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.330-4085.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.330-4085.comp42632_c0_seq3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/comp42632_c0_seq4.for.305-4085.0.fasta -t /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.305-4085.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.305-4085.comp42632_c0_seq4.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/comp27348_c0_seq1.for.3795-4815.0.fasta -t /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.3795-4815.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.3795-4815.comp27348_c0_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/comp27348_c1_seq2.for.4462-11383.0.fasta -t /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.4462-11383.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.4462-11383.comp27348_c1_seq2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/comp27348_c1_seq3.for.4462-11383.0.fasta -t /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.4462-11383.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.4462-11383.comp27348_c1_seq3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/comp44195_c1_seq1.for.6552-10364.0.fasta -t /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.6552-10364.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.6552-10364.comp44195_c1_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/comp27348_c1_seq4.for.4038-11383.0.fasta -t /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.4038-11383.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.4038-11383.comp27348_c1_seq4.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/comp44195_c1_seq3.for.6552-10364.0.fasta -t /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.6552-10364.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.6552-10364.comp44195_c1_seq3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/comp44195_c1_seq4.for.6552-10364.0.fasta -t /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.6552-10364.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.6552-10364.comp44195_c1_seq4.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/comp44195_c1_seq5.for.6552-10364.0.fasta -t /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.6552-10364.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.6552-10364.comp44195_c1_seq5.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/comp44195_c1_seq6.for.6552-10364.0.fasta -t /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.6552-10364.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.6552-10364.comp44195_c1_seq6.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/comp44195_c1_seq7.for.6552-10364.0.fasta -t /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.6552-10364.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.6552-10364.comp44195_c1_seq7.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/comp44195_c1_seq8.for.6552-10364.0.fasta -t /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.6552-10364.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.6552-10364.comp44195_c1_seq8.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/comp1400_c0_seq1.for.5612-6609.0.fasta -t /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.5612-6609.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.5612-6609.comp1400_c0_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/comp27348_c1_seq1.for.4038-11383.0.fasta -t /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.4038-11383.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.4038-11383.comp27348_c1_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/comp44195_c1_seq9.for.6552-10364.0.fasta -t /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.6552-10364.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.6552-10364.comp44195_c1_seq9.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:4 now processing 0 ...processing 0 of 26 ...processing 1 of 26 ...processing 2 of 26 ...processing 3 of 26 ...processing 4 of 26 ...processing 5 of 26 ...processing 6 of 26 ...processing 7 of 26 ...processing 8 of 26 ...processing 9 of 26 ...processing 10 of 26 ...processing 11 of 26 ...processing 12 of 26 ...processing 13 of 26 ...processing 14 of 26 ...processing 15 of 26 ...processing 16 of 26 ...processing 17 of 26 ...processing 18 of 26 ...processing 19 of 26 ...processing 20 of 26 ...trimming the rest total clusters:4 now processing 0 ...processing 0 of 8 ...processing 1 of 8 ...processing 2 of 8 ...processing 3 of 8 ...processing 4 of 8 ...processing 5 of 8 ...processing 6 of 8 ...processing 7 of 8 total clusters:4 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:4 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/5A/D4/Contig146366//theVoid.Contig146366/0/Contig146366.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/5A/D4/Contig146366//theVoid.Contig146366/0/Contig146366.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/5A/D4/Contig146366//theVoid.Contig146366/0/Contig146366.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/5A/D4/Contig146366//theVoid.Contig146366/0/Contig146366.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/5A/D4/Contig146366//theVoid.Contig146366/0/Contig146366.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/5A/D4/Contig146366//theVoid.Contig146366/0/Contig146366.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/5A/D4/Contig146366//theVoid.Contig146366/0/Contig146366.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/5A/D4/Contig146366//theVoid.Contig146366/0/Contig146366.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/5A/D4/Contig146366//theVoid.Contig146366/0/Contig146366.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.34/cctools-temp-t.34.h2PyqC/maker_Vz0_eL/0/Contig146366.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.34/Olurida_v081.maker.output/Olurida_v081_datastore/5A/D4/Contig146366//theVoid.Contig146366/0/Contig146366.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output Maker is now finished!!! Start_time: 1533652860 End_time: 1533653153 Elapsed: 293 ================================= Argument "2.53_01" isn't numeric in numeric ge (>=) at /usr/local/lib/x86_64-linux-gnu/perl/5.22.1/forks.pm line 1570. Unknown option: debug_size_limit STATUS: Parsing control files... STATUS: Processing and indexing input FASTA files... STATUS: Setting up database for any GFF3 input... A data structure will be created for you at: /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore To access files for individual sequences use the datastore index: /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_master_datastore_index.log STATUS: Now running MAKER... examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig106404 Length: 9849 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/F9/F4/Contig106404//theVoid.Contig106404/0/Contig106404.0.all.rb -species all -dir /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/F9/F4/Contig106404//theVoid.Contig106404/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106404.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/F9/F4/Contig106404//theVoid.Contig106404/0/Contig106404.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106404.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/F9/F4/Contig106404//theVoid.Contig106404/0/Contig106404.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106404.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/F9/F4/Contig106404//theVoid.Contig106404/0/Contig106404.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106404.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/F9/F4/Contig106404//theVoid.Contig106404/0/Contig106404.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106404.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/F9/F4/Contig106404//theVoid.Contig106404/0/Contig106404.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106404.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/F9/F4/Contig106404//theVoid.Contig106404/0/Contig106404.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106404.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/F9/F4/Contig106404//theVoid.Contig106404/0/Contig106404.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106404.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/F9/F4/Contig106404//theVoid.Contig106404/0/Contig106404.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106404.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/F9/F4/Contig106404//theVoid.Contig106404/0/Contig106404.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106404.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/F9/F4/Contig106404//theVoid.Contig106404/0/Contig106404.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106404.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/F9/F4/Contig106404//theVoid.Contig106404/0/Contig106404.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106404.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/F9/F4/Contig106404//theVoid.Contig106404/0/Contig106404.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106404.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/F9/F4/Contig106404//theVoid.Contig106404/0/Contig106404.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106404.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/F9/F4/Contig106404//theVoid.Contig106404/0/Contig106404.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106404.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/F9/F4/Contig106404//theVoid.Contig106404/0/Contig106404.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106404.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/F9/F4/Contig106404//theVoid.Contig106404/0/Contig106404.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106404.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/F9/F4/Contig106404//theVoid.Contig106404/0/Contig106404.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106404.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/F9/F4/Contig106404//theVoid.Contig106404/0/Contig106404.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106404.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/F9/F4/Contig106404//theVoid.Contig106404/0/Contig106404.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106404.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/F9/F4/Contig106404//theVoid.Contig106404/0/Contig106404.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig106405 Length: 20513 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/57/BA/Contig106405//theVoid.Contig106405/0/Contig106405.0.all.rb -species all -dir /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/57/BA/Contig106405//theVoid.Contig106405/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106405.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/57/BA/Contig106405//theVoid.Contig106405/0/Contig106405.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106405.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/57/BA/Contig106405//theVoid.Contig106405/0/Contig106405.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106405.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/57/BA/Contig106405//theVoid.Contig106405/0/Contig106405.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106405.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/57/BA/Contig106405//theVoid.Contig106405/0/Contig106405.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106405.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/57/BA/Contig106405//theVoid.Contig106405/0/Contig106405.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106405.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/57/BA/Contig106405//theVoid.Contig106405/0/Contig106405.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106405.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/57/BA/Contig106405//theVoid.Contig106405/0/Contig106405.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106405.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/57/BA/Contig106405//theVoid.Contig106405/0/Contig106405.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106405.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/57/BA/Contig106405//theVoid.Contig106405/0/Contig106405.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106405.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/57/BA/Contig106405//theVoid.Contig106405/0/Contig106405.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/comp40581_c0_seq1.for.16645-17667.0.fasta -t /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106405.16645-17667.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106405.16645-17667.comp40581_c0_seq1.e.exonerate #-------------------------------# cleaning blastn... cleaning clusters.... total clusters:1 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106405.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/57/BA/Contig106405//theVoid.Contig106405/0/Contig106405.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106405.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/57/BA/Contig106405//theVoid.Contig106405/0/Contig106405.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106405.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/57/BA/Contig106405//theVoid.Contig106405/0/Contig106405.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106405.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/57/BA/Contig106405//theVoid.Contig106405/0/Contig106405.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106405.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/57/BA/Contig106405//theVoid.Contig106405/0/Contig106405.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106405.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/57/BA/Contig106405//theVoid.Contig106405/0/Contig106405.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106405.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/57/BA/Contig106405//theVoid.Contig106405/0/Contig106405.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106405.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/57/BA/Contig106405//theVoid.Contig106405/0/Contig106405.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106405.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/57/BA/Contig106405//theVoid.Contig106405/0/Contig106405.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106405.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/57/BA/Contig106405//theVoid.Contig106405/0/Contig106405.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig106406 Length: 2902 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/7D/1E/Contig106406//theVoid.Contig106406/0/Contig106406.0.all.rb -species all -dir /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/7D/1E/Contig106406//theVoid.Contig106406/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106406.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/7D/1E/Contig106406//theVoid.Contig106406/0/Contig106406.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106406.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/7D/1E/Contig106406//theVoid.Contig106406/0/Contig106406.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106406.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/7D/1E/Contig106406//theVoid.Contig106406/0/Contig106406.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106406.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/7D/1E/Contig106406//theVoid.Contig106406/0/Contig106406.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106406.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/7D/1E/Contig106406//theVoid.Contig106406/0/Contig106406.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106406.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/7D/1E/Contig106406//theVoid.Contig106406/0/Contig106406.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106406.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/7D/1E/Contig106406//theVoid.Contig106406/0/Contig106406.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106406.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/7D/1E/Contig106406//theVoid.Contig106406/0/Contig106406.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106406.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/7D/1E/Contig106406//theVoid.Contig106406/0/Contig106406.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106406.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/7D/1E/Contig106406//theVoid.Contig106406/0/Contig106406.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/comp42453_c2_seq2.for.290-1214.0.fasta -t /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106406.290-1214.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106406.290-1214.comp42453_c2_seq2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/comp30664_c0_seq2.for.634-1748.0.fasta -t /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106406.634-1748.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106406.634-1748.comp30664_c0_seq2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/comp30664_c0_seq3.for.733-1748.0.fasta -t /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106406.733-1748.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106406.733-1748.comp30664_c0_seq3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/comp30664_c0_seq4.for.733-1738.0.fasta -t /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106406.733-1738.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106406.733-1738.comp30664_c0_seq4.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/comp30664_c0_seq1.for.634-1738.0.fasta -t /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106406.634-1738.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106406.634-1738.comp30664_c0_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/comp30766_c5_seq1.for.1653-2817.0.fasta -t /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106406.1653-2817.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106406.1653-2817.comp30766_c5_seq1.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:2 now processing 0 total clusters:2 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106406.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/7D/1E/Contig106406//theVoid.Contig106406/0/Contig106406.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106406.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/7D/1E/Contig106406//theVoid.Contig106406/0/Contig106406.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106406.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/7D/1E/Contig106406//theVoid.Contig106406/0/Contig106406.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106406.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/7D/1E/Contig106406//theVoid.Contig106406/0/Contig106406.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106406.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/7D/1E/Contig106406//theVoid.Contig106406/0/Contig106406.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106406.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/7D/1E/Contig106406//theVoid.Contig106406/0/Contig106406.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106406.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/7D/1E/Contig106406//theVoid.Contig106406/0/Contig106406.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106406.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/7D/1E/Contig106406//theVoid.Contig106406/0/Contig106406.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106406.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/7D/1E/Contig106406//theVoid.Contig106406/0/Contig106406.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106406.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/7D/1E/Contig106406//theVoid.Contig106406/0/Contig106406.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig106407 Length: 1591 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/A8/D0/Contig106407//theVoid.Contig106407/0/Contig106407.0.all.rb -species all -dir /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/A8/D0/Contig106407//theVoid.Contig106407/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106407.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/A8/D0/Contig106407//theVoid.Contig106407/0/Contig106407.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106407.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/A8/D0/Contig106407//theVoid.Contig106407/0/Contig106407.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106407.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/A8/D0/Contig106407//theVoid.Contig106407/0/Contig106407.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106407.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/A8/D0/Contig106407//theVoid.Contig106407/0/Contig106407.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106407.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/A8/D0/Contig106407//theVoid.Contig106407/0/Contig106407.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106407.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/A8/D0/Contig106407//theVoid.Contig106407/0/Contig106407.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106407.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/A8/D0/Contig106407//theVoid.Contig106407/0/Contig106407.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106407.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/A8/D0/Contig106407//theVoid.Contig106407/0/Contig106407.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106407.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/A8/D0/Contig106407//theVoid.Contig106407/0/Contig106407.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106407.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/A8/D0/Contig106407//theVoid.Contig106407/0/Contig106407.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106407.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/A8/D0/Contig106407//theVoid.Contig106407/0/Contig106407.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106407.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/A8/D0/Contig106407//theVoid.Contig106407/0/Contig106407.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106407.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/A8/D0/Contig106407//theVoid.Contig106407/0/Contig106407.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106407.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/A8/D0/Contig106407//theVoid.Contig106407/0/Contig106407.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106407.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/A8/D0/Contig106407//theVoid.Contig106407/0/Contig106407.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106407.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/A8/D0/Contig106407//theVoid.Contig106407/0/Contig106407.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106407.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/A8/D0/Contig106407//theVoid.Contig106407/0/Contig106407.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106407.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/A8/D0/Contig106407//theVoid.Contig106407/0/Contig106407.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106407.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/A8/D0/Contig106407//theVoid.Contig106407/0/Contig106407.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106407.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/A8/D0/Contig106407//theVoid.Contig106407/0/Contig106407.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig106408 Length: 8400 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/E0/0A/Contig106408//theVoid.Contig106408/0/Contig106408.0.all.rb -species all -dir /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/E0/0A/Contig106408//theVoid.Contig106408/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106408.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/E0/0A/Contig106408//theVoid.Contig106408/0/Contig106408.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106408.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/E0/0A/Contig106408//theVoid.Contig106408/0/Contig106408.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106408.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/E0/0A/Contig106408//theVoid.Contig106408/0/Contig106408.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106408.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/E0/0A/Contig106408//theVoid.Contig106408/0/Contig106408.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106408.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/E0/0A/Contig106408//theVoid.Contig106408/0/Contig106408.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106408.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/E0/0A/Contig106408//theVoid.Contig106408/0/Contig106408.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106408.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/E0/0A/Contig106408//theVoid.Contig106408/0/Contig106408.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106408.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/E0/0A/Contig106408//theVoid.Contig106408/0/Contig106408.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106408.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/E0/0A/Contig106408//theVoid.Contig106408/0/Contig106408.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106408.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/E0/0A/Contig106408//theVoid.Contig106408/0/Contig106408.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106408.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/E0/0A/Contig106408//theVoid.Contig106408/0/Contig106408.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106408.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/E0/0A/Contig106408//theVoid.Contig106408/0/Contig106408.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106408.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/E0/0A/Contig106408//theVoid.Contig106408/0/Contig106408.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106408.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/E0/0A/Contig106408//theVoid.Contig106408/0/Contig106408.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106408.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/E0/0A/Contig106408//theVoid.Contig106408/0/Contig106408.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106408.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/E0/0A/Contig106408//theVoid.Contig106408/0/Contig106408.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106408.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/E0/0A/Contig106408//theVoid.Contig106408/0/Contig106408.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106408.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/E0/0A/Contig106408//theVoid.Contig106408/0/Contig106408.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106408.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/E0/0A/Contig106408//theVoid.Contig106408/0/Contig106408.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106408.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/E0/0A/Contig106408//theVoid.Contig106408/0/Contig106408.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig106409 Length: 1184 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/CA/F0/Contig106409//theVoid.Contig106409/0/Contig106409.0.all.rb -species all -dir /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/CA/F0/Contig106409//theVoid.Contig106409/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106409.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/CA/F0/Contig106409//theVoid.Contig106409/0/Contig106409.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106409.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/CA/F0/Contig106409//theVoid.Contig106409/0/Contig106409.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106409.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/CA/F0/Contig106409//theVoid.Contig106409/0/Contig106409.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106409.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/CA/F0/Contig106409//theVoid.Contig106409/0/Contig106409.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106409.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/CA/F0/Contig106409//theVoid.Contig106409/0/Contig106409.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106409.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/CA/F0/Contig106409//theVoid.Contig106409/0/Contig106409.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106409.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/CA/F0/Contig106409//theVoid.Contig106409/0/Contig106409.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106409.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/CA/F0/Contig106409//theVoid.Contig106409/0/Contig106409.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106409.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/CA/F0/Contig106409//theVoid.Contig106409/0/Contig106409.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106409.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/CA/F0/Contig106409//theVoid.Contig106409/0/Contig106409.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106409.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/CA/F0/Contig106409//theVoid.Contig106409/0/Contig106409.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106409.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/CA/F0/Contig106409//theVoid.Contig106409/0/Contig106409.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106409.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/CA/F0/Contig106409//theVoid.Contig106409/0/Contig106409.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106409.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/CA/F0/Contig106409//theVoid.Contig106409/0/Contig106409.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106409.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/CA/F0/Contig106409//theVoid.Contig106409/0/Contig106409.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106409.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/CA/F0/Contig106409//theVoid.Contig106409/0/Contig106409.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106409.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/CA/F0/Contig106409//theVoid.Contig106409/0/Contig106409.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106409.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/CA/F0/Contig106409//theVoid.Contig106409/0/Contig106409.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106409.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/CA/F0/Contig106409//theVoid.Contig106409/0/Contig106409.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106409.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/CA/F0/Contig106409//theVoid.Contig106409/0/Contig106409.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig106410 Length: 1899 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/5D/23/Contig106410//theVoid.Contig106410/0/Contig106410.0.all.rb -species all -dir /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/5D/23/Contig106410//theVoid.Contig106410/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106410.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/5D/23/Contig106410//theVoid.Contig106410/0/Contig106410.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106410.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/5D/23/Contig106410//theVoid.Contig106410/0/Contig106410.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106410.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/5D/23/Contig106410//theVoid.Contig106410/0/Contig106410.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106410.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/5D/23/Contig106410//theVoid.Contig106410/0/Contig106410.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106410.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/5D/23/Contig106410//theVoid.Contig106410/0/Contig106410.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106410.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/5D/23/Contig106410//theVoid.Contig106410/0/Contig106410.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106410.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/5D/23/Contig106410//theVoid.Contig106410/0/Contig106410.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106410.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/5D/23/Contig106410//theVoid.Contig106410/0/Contig106410.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106410.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/5D/23/Contig106410//theVoid.Contig106410/0/Contig106410.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106410.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/5D/23/Contig106410//theVoid.Contig106410/0/Contig106410.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106410.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/5D/23/Contig106410//theVoid.Contig106410/0/Contig106410.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106410.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/5D/23/Contig106410//theVoid.Contig106410/0/Contig106410.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106410.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/5D/23/Contig106410//theVoid.Contig106410/0/Contig106410.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106410.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/5D/23/Contig106410//theVoid.Contig106410/0/Contig106410.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106410.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/5D/23/Contig106410//theVoid.Contig106410/0/Contig106410.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106410.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/5D/23/Contig106410//theVoid.Contig106410/0/Contig106410.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106410.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/5D/23/Contig106410//theVoid.Contig106410/0/Contig106410.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106410.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/5D/23/Contig106410//theVoid.Contig106410/0/Contig106410.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106410.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/5D/23/Contig106410//theVoid.Contig106410/0/Contig106410.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106410.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/5D/23/Contig106410//theVoid.Contig106410/0/Contig106410.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig106411 Length: 1842 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/FE/77/Contig106411//theVoid.Contig106411/0/Contig106411.0.all.rb -species all -dir /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/FE/77/Contig106411//theVoid.Contig106411/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106411.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/FE/77/Contig106411//theVoid.Contig106411/0/Contig106411.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106411.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/FE/77/Contig106411//theVoid.Contig106411/0/Contig106411.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106411.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/FE/77/Contig106411//theVoid.Contig106411/0/Contig106411.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106411.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/FE/77/Contig106411//theVoid.Contig106411/0/Contig106411.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106411.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/FE/77/Contig106411//theVoid.Contig106411/0/Contig106411.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106411.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/FE/77/Contig106411//theVoid.Contig106411/0/Contig106411.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106411.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/FE/77/Contig106411//theVoid.Contig106411/0/Contig106411.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106411.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/FE/77/Contig106411//theVoid.Contig106411/0/Contig106411.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106411.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/FE/77/Contig106411//theVoid.Contig106411/0/Contig106411.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106411.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/FE/77/Contig106411//theVoid.Contig106411/0/Contig106411.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106411.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/FE/77/Contig106411//theVoid.Contig106411/0/Contig106411.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106411.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/FE/77/Contig106411//theVoid.Contig106411/0/Contig106411.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106411.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/FE/77/Contig106411//theVoid.Contig106411/0/Contig106411.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106411.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/FE/77/Contig106411//theVoid.Contig106411/0/Contig106411.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106411.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/FE/77/Contig106411//theVoid.Contig106411/0/Contig106411.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106411.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/FE/77/Contig106411//theVoid.Contig106411/0/Contig106411.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106411.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/FE/77/Contig106411//theVoid.Contig106411/0/Contig106411.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106411.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/FE/77/Contig106411//theVoid.Contig106411/0/Contig106411.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106411.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/FE/77/Contig106411//theVoid.Contig106411/0/Contig106411.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106411.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/FE/77/Contig106411//theVoid.Contig106411/0/Contig106411.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig106412 Length: 2178 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/DC/53/Contig106412//theVoid.Contig106412/0/Contig106412.0.all.rb -species all -dir /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/DC/53/Contig106412//theVoid.Contig106412/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106412.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/DC/53/Contig106412//theVoid.Contig106412/0/Contig106412.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106412.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/DC/53/Contig106412//theVoid.Contig106412/0/Contig106412.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106412.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/DC/53/Contig106412//theVoid.Contig106412/0/Contig106412.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106412.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/DC/53/Contig106412//theVoid.Contig106412/0/Contig106412.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106412.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/DC/53/Contig106412//theVoid.Contig106412/0/Contig106412.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106412.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/DC/53/Contig106412//theVoid.Contig106412/0/Contig106412.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106412.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/DC/53/Contig106412//theVoid.Contig106412/0/Contig106412.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106412.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/DC/53/Contig106412//theVoid.Contig106412/0/Contig106412.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106412.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/DC/53/Contig106412//theVoid.Contig106412/0/Contig106412.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106412.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/DC/53/Contig106412//theVoid.Contig106412/0/Contig106412.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106412.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/DC/53/Contig106412//theVoid.Contig106412/0/Contig106412.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106412.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/DC/53/Contig106412//theVoid.Contig106412/0/Contig106412.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106412.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/DC/53/Contig106412//theVoid.Contig106412/0/Contig106412.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106412.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/DC/53/Contig106412//theVoid.Contig106412/0/Contig106412.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106412.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/DC/53/Contig106412//theVoid.Contig106412/0/Contig106412.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106412.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/DC/53/Contig106412//theVoid.Contig106412/0/Contig106412.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106412.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/DC/53/Contig106412//theVoid.Contig106412/0/Contig106412.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106412.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/DC/53/Contig106412//theVoid.Contig106412/0/Contig106412.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106412.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/DC/53/Contig106412//theVoid.Contig106412/0/Contig106412.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106412.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/DC/53/Contig106412//theVoid.Contig106412/0/Contig106412.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig106413 Length: 5195 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/DA/4C/Contig106413//theVoid.Contig106413/0/Contig106413.0.all.rb -species all -dir /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/DA/4C/Contig106413//theVoid.Contig106413/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106413.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/DA/4C/Contig106413//theVoid.Contig106413/0/Contig106413.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106413.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/DA/4C/Contig106413//theVoid.Contig106413/0/Contig106413.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106413.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/DA/4C/Contig106413//theVoid.Contig106413/0/Contig106413.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106413.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/DA/4C/Contig106413//theVoid.Contig106413/0/Contig106413.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106413.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/DA/4C/Contig106413//theVoid.Contig106413/0/Contig106413.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106413.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/DA/4C/Contig106413//theVoid.Contig106413/0/Contig106413.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106413.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/DA/4C/Contig106413//theVoid.Contig106413/0/Contig106413.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106413.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/DA/4C/Contig106413//theVoid.Contig106413/0/Contig106413.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106413.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/DA/4C/Contig106413//theVoid.Contig106413/0/Contig106413.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106413.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/DA/4C/Contig106413//theVoid.Contig106413/0/Contig106413.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/comp38238_c1_seq1.for.3380-4349.0.fasta -t /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106413.3380-4349.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106413.3380-4349.comp38238_c1_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/comp37904_c4_seq1.for.882-5195.0.fasta -t /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106413.882-5195.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106413.882-5195.comp37904_c4_seq1.e.exonerate #-------------------------------# cleaning blastn... cleaning clusters.... total clusters:2 now processing 0 total clusters:2 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106413.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/DA/4C/Contig106413//theVoid.Contig106413/0/Contig106413.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106413.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/DA/4C/Contig106413//theVoid.Contig106413/0/Contig106413.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106413.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/DA/4C/Contig106413//theVoid.Contig106413/0/Contig106413.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106413.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/DA/4C/Contig106413//theVoid.Contig106413/0/Contig106413.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106413.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/DA/4C/Contig106413//theVoid.Contig106413/0/Contig106413.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106413.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/DA/4C/Contig106413//theVoid.Contig106413/0/Contig106413.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106413.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/DA/4C/Contig106413//theVoid.Contig106413/0/Contig106413.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106413.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/DA/4C/Contig106413//theVoid.Contig106413/0/Contig106413.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106413.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/DA/4C/Contig106413//theVoid.Contig106413/0/Contig106413.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.36/cctools-temp-t.36.GHwwxz/maker_kAFIov/0/Contig106413.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.36/Olurida_v081.maker.output/Olurida_v081_datastore/DA/4C/Contig106413//theVoid.Contig106413/0/Contig106413.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output Maker is now finished!!! Start_time: 1533652860 End_time: 1533653154 Elapsed: 294 ================================= Argument "2.53_01" isn't numeric in numeric ge (>=) at /usr/local/lib/x86_64-linux-gnu/perl/5.22.1/forks.pm line 1570. Unknown option: debug_size_limit STATUS: Parsing control files... STATUS: Processing and indexing input FASTA files... STATUS: Setting up database for any GFF3 input... A data structure will be created for you at: /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore To access files for individual sequences use the datastore index: /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_master_datastore_index.log STATUS: Now running MAKER... examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig121540 Length: 1186 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/3B/6D/Contig121540//theVoid.Contig121540/0/Contig121540.0.all.rb -species all -dir /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/3B/6D/Contig121540//theVoid.Contig121540/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121540.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/3B/6D/Contig121540//theVoid.Contig121540/0/Contig121540.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121540.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/3B/6D/Contig121540//theVoid.Contig121540/0/Contig121540.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121540.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/3B/6D/Contig121540//theVoid.Contig121540/0/Contig121540.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121540.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/3B/6D/Contig121540//theVoid.Contig121540/0/Contig121540.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121540.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/3B/6D/Contig121540//theVoid.Contig121540/0/Contig121540.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121540.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/3B/6D/Contig121540//theVoid.Contig121540/0/Contig121540.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121540.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/3B/6D/Contig121540//theVoid.Contig121540/0/Contig121540.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121540.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/3B/6D/Contig121540//theVoid.Contig121540/0/Contig121540.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121540.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/3B/6D/Contig121540//theVoid.Contig121540/0/Contig121540.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121540.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/3B/6D/Contig121540//theVoid.Contig121540/0/Contig121540.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121540.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/3B/6D/Contig121540//theVoid.Contig121540/0/Contig121540.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121540.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/3B/6D/Contig121540//theVoid.Contig121540/0/Contig121540.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121540.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/3B/6D/Contig121540//theVoid.Contig121540/0/Contig121540.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121540.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/3B/6D/Contig121540//theVoid.Contig121540/0/Contig121540.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121540.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/3B/6D/Contig121540//theVoid.Contig121540/0/Contig121540.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121540.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/3B/6D/Contig121540//theVoid.Contig121540/0/Contig121540.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121540.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/3B/6D/Contig121540//theVoid.Contig121540/0/Contig121540.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121540.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/3B/6D/Contig121540//theVoid.Contig121540/0/Contig121540.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121540.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/3B/6D/Contig121540//theVoid.Contig121540/0/Contig121540.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121540.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/3B/6D/Contig121540//theVoid.Contig121540/0/Contig121540.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig121543 Length: 1879 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/C9/4F/Contig121543//theVoid.Contig121543/0/Contig121543.0.all.rb -species all -dir /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/C9/4F/Contig121543//theVoid.Contig121543/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121543.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/C9/4F/Contig121543//theVoid.Contig121543/0/Contig121543.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121543.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/C9/4F/Contig121543//theVoid.Contig121543/0/Contig121543.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121543.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/C9/4F/Contig121543//theVoid.Contig121543/0/Contig121543.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121543.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/C9/4F/Contig121543//theVoid.Contig121543/0/Contig121543.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121543.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/C9/4F/Contig121543//theVoid.Contig121543/0/Contig121543.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121543.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/C9/4F/Contig121543//theVoid.Contig121543/0/Contig121543.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121543.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/C9/4F/Contig121543//theVoid.Contig121543/0/Contig121543.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121543.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/C9/4F/Contig121543//theVoid.Contig121543/0/Contig121543.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121543.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/C9/4F/Contig121543//theVoid.Contig121543/0/Contig121543.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121543.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/C9/4F/Contig121543//theVoid.Contig121543/0/Contig121543.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121543.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/C9/4F/Contig121543//theVoid.Contig121543/0/Contig121543.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121543.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/C9/4F/Contig121543//theVoid.Contig121543/0/Contig121543.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121543.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/C9/4F/Contig121543//theVoid.Contig121543/0/Contig121543.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121543.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/C9/4F/Contig121543//theVoid.Contig121543/0/Contig121543.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121543.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/C9/4F/Contig121543//theVoid.Contig121543/0/Contig121543.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121543.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/C9/4F/Contig121543//theVoid.Contig121543/0/Contig121543.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121543.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/C9/4F/Contig121543//theVoid.Contig121543/0/Contig121543.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121543.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/C9/4F/Contig121543//theVoid.Contig121543/0/Contig121543.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121543.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/C9/4F/Contig121543//theVoid.Contig121543/0/Contig121543.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121543.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/C9/4F/Contig121543//theVoid.Contig121543/0/Contig121543.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig121544 Length: 1401 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/FB/5F/Contig121544//theVoid.Contig121544/0/Contig121544.0.all.rb -species all -dir /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/FB/5F/Contig121544//theVoid.Contig121544/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121544.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/FB/5F/Contig121544//theVoid.Contig121544/0/Contig121544.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121544.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/FB/5F/Contig121544//theVoid.Contig121544/0/Contig121544.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121544.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/FB/5F/Contig121544//theVoid.Contig121544/0/Contig121544.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121544.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/FB/5F/Contig121544//theVoid.Contig121544/0/Contig121544.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121544.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/FB/5F/Contig121544//theVoid.Contig121544/0/Contig121544.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121544.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/FB/5F/Contig121544//theVoid.Contig121544/0/Contig121544.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121544.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/FB/5F/Contig121544//theVoid.Contig121544/0/Contig121544.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121544.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/FB/5F/Contig121544//theVoid.Contig121544/0/Contig121544.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121544.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/FB/5F/Contig121544//theVoid.Contig121544/0/Contig121544.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121544.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/FB/5F/Contig121544//theVoid.Contig121544/0/Contig121544.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121544.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/FB/5F/Contig121544//theVoid.Contig121544/0/Contig121544.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121544.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/FB/5F/Contig121544//theVoid.Contig121544/0/Contig121544.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121544.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/FB/5F/Contig121544//theVoid.Contig121544/0/Contig121544.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121544.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/FB/5F/Contig121544//theVoid.Contig121544/0/Contig121544.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121544.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/FB/5F/Contig121544//theVoid.Contig121544/0/Contig121544.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121544.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/FB/5F/Contig121544//theVoid.Contig121544/0/Contig121544.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121544.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/FB/5F/Contig121544//theVoid.Contig121544/0/Contig121544.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121544.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/FB/5F/Contig121544//theVoid.Contig121544/0/Contig121544.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121544.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/FB/5F/Contig121544//theVoid.Contig121544/0/Contig121544.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121544.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/FB/5F/Contig121544//theVoid.Contig121544/0/Contig121544.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig121545 Length: 7125 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/A7/EF/Contig121545//theVoid.Contig121545/0/Contig121545.0.all.rb -species all -dir /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/A7/EF/Contig121545//theVoid.Contig121545/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121545.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/A7/EF/Contig121545//theVoid.Contig121545/0/Contig121545.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121545.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/A7/EF/Contig121545//theVoid.Contig121545/0/Contig121545.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121545.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/A7/EF/Contig121545//theVoid.Contig121545/0/Contig121545.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121545.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/A7/EF/Contig121545//theVoid.Contig121545/0/Contig121545.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121545.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/A7/EF/Contig121545//theVoid.Contig121545/0/Contig121545.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121545.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/A7/EF/Contig121545//theVoid.Contig121545/0/Contig121545.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121545.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/A7/EF/Contig121545//theVoid.Contig121545/0/Contig121545.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121545.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/A7/EF/Contig121545//theVoid.Contig121545/0/Contig121545.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121545.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/A7/EF/Contig121545//theVoid.Contig121545/0/Contig121545.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121545.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/A7/EF/Contig121545//theVoid.Contig121545/0/Contig121545.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/comp43520_c3_seq5.for.733-1836.0.fasta -t /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121545.733-1836.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121545.733-1836.comp43520_c3_seq5.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/comp39704_c1_seq27.for.3900-4826.0.fasta -t /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121545.3900-4826.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121545.3900-4826.comp39704_c1_seq27.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/comp39704_c1_seq28.for.3900-4826.0.fasta -t /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121545.3900-4826.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121545.3900-4826.comp39704_c1_seq28.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/comp39704_c1_seq19.for.3749-4828.0.fasta -t /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121545.3749-4828.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121545.3749-4828.comp39704_c1_seq19.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/comp39704_c1_seq10.for.3749-4826.0.fasta -t /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121545.3749-4826.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121545.3749-4826.comp39704_c1_seq10.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/comp38913_c17_seq1.for.5327-6359.0.fasta -t /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121545.5327-6359.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121545.5327-6359.comp38913_c17_seq1.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:2 now processing 0 total clusters:2 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121545.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/A7/EF/Contig121545//theVoid.Contig121545/0/Contig121545.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121545.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/A7/EF/Contig121545//theVoid.Contig121545/0/Contig121545.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121545.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/A7/EF/Contig121545//theVoid.Contig121545/0/Contig121545.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121545.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/A7/EF/Contig121545//theVoid.Contig121545/0/Contig121545.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121545.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/A7/EF/Contig121545//theVoid.Contig121545/0/Contig121545.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121545.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/A7/EF/Contig121545//theVoid.Contig121545/0/Contig121545.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121545.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/A7/EF/Contig121545//theVoid.Contig121545/0/Contig121545.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121545.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/A7/EF/Contig121545//theVoid.Contig121545/0/Contig121545.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121545.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/A7/EF/Contig121545//theVoid.Contig121545/0/Contig121545.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121545.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/A7/EF/Contig121545//theVoid.Contig121545/0/Contig121545.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig121546 Length: 2244 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/F3/34/Contig121546//theVoid.Contig121546/0/Contig121546.0.all.rb -species all -dir /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/F3/34/Contig121546//theVoid.Contig121546/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121546.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/F3/34/Contig121546//theVoid.Contig121546/0/Contig121546.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121546.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/F3/34/Contig121546//theVoid.Contig121546/0/Contig121546.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121546.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/F3/34/Contig121546//theVoid.Contig121546/0/Contig121546.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121546.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/F3/34/Contig121546//theVoid.Contig121546/0/Contig121546.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121546.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/F3/34/Contig121546//theVoid.Contig121546/0/Contig121546.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121546.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/F3/34/Contig121546//theVoid.Contig121546/0/Contig121546.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121546.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/F3/34/Contig121546//theVoid.Contig121546/0/Contig121546.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121546.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/F3/34/Contig121546//theVoid.Contig121546/0/Contig121546.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121546.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/F3/34/Contig121546//theVoid.Contig121546/0/Contig121546.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121546.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/F3/34/Contig121546//theVoid.Contig121546/0/Contig121546.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121546.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/F3/34/Contig121546//theVoid.Contig121546/0/Contig121546.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121546.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/F3/34/Contig121546//theVoid.Contig121546/0/Contig121546.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121546.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/F3/34/Contig121546//theVoid.Contig121546/0/Contig121546.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121546.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/F3/34/Contig121546//theVoid.Contig121546/0/Contig121546.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121546.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/F3/34/Contig121546//theVoid.Contig121546/0/Contig121546.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121546.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/F3/34/Contig121546//theVoid.Contig121546/0/Contig121546.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121546.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/F3/34/Contig121546//theVoid.Contig121546/0/Contig121546.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121546.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/F3/34/Contig121546//theVoid.Contig121546/0/Contig121546.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121546.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/F3/34/Contig121546//theVoid.Contig121546/0/Contig121546.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121546.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/F3/34/Contig121546//theVoid.Contig121546/0/Contig121546.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig121548 Length: 1997 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/78/3B/Contig121548//theVoid.Contig121548/0/Contig121548.0.all.rb -species all -dir /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/78/3B/Contig121548//theVoid.Contig121548/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121548.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/78/3B/Contig121548//theVoid.Contig121548/0/Contig121548.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121548.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/78/3B/Contig121548//theVoid.Contig121548/0/Contig121548.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121548.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/78/3B/Contig121548//theVoid.Contig121548/0/Contig121548.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121548.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/78/3B/Contig121548//theVoid.Contig121548/0/Contig121548.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121548.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/78/3B/Contig121548//theVoid.Contig121548/0/Contig121548.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121548.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/78/3B/Contig121548//theVoid.Contig121548/0/Contig121548.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121548.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/78/3B/Contig121548//theVoid.Contig121548/0/Contig121548.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121548.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/78/3B/Contig121548//theVoid.Contig121548/0/Contig121548.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121548.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/78/3B/Contig121548//theVoid.Contig121548/0/Contig121548.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121548.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/78/3B/Contig121548//theVoid.Contig121548/0/Contig121548.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121548.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/78/3B/Contig121548//theVoid.Contig121548/0/Contig121548.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121548.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/78/3B/Contig121548//theVoid.Contig121548/0/Contig121548.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121548.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/78/3B/Contig121548//theVoid.Contig121548/0/Contig121548.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121548.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/78/3B/Contig121548//theVoid.Contig121548/0/Contig121548.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121548.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/78/3B/Contig121548//theVoid.Contig121548/0/Contig121548.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121548.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/78/3B/Contig121548//theVoid.Contig121548/0/Contig121548.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121548.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/78/3B/Contig121548//theVoid.Contig121548/0/Contig121548.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121548.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/78/3B/Contig121548//theVoid.Contig121548/0/Contig121548.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121548.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/78/3B/Contig121548//theVoid.Contig121548/0/Contig121548.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121548.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/78/3B/Contig121548//theVoid.Contig121548/0/Contig121548.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig121549 Length: 3366 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/E5/CC/Contig121549//theVoid.Contig121549/0/Contig121549.0.all.rb -species all -dir /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/E5/CC/Contig121549//theVoid.Contig121549/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121549.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/E5/CC/Contig121549//theVoid.Contig121549/0/Contig121549.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121549.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/E5/CC/Contig121549//theVoid.Contig121549/0/Contig121549.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121549.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/E5/CC/Contig121549//theVoid.Contig121549/0/Contig121549.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121549.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/E5/CC/Contig121549//theVoid.Contig121549/0/Contig121549.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121549.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/E5/CC/Contig121549//theVoid.Contig121549/0/Contig121549.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121549.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/E5/CC/Contig121549//theVoid.Contig121549/0/Contig121549.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121549.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/E5/CC/Contig121549//theVoid.Contig121549/0/Contig121549.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121549.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/E5/CC/Contig121549//theVoid.Contig121549/0/Contig121549.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121549.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/E5/CC/Contig121549//theVoid.Contig121549/0/Contig121549.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121549.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/E5/CC/Contig121549//theVoid.Contig121549/0/Contig121549.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/comp30239_c1_seq1.for.1-999.0.fasta -t /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121549.1-999.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121549.1-999.comp30239_c1_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/comp30239_c1_seq2.for.1-999.0.fasta -t /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121549.1-999.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121549.1-999.comp30239_c1_seq2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/comp30239_c2_seq1.for.1-1684.0.fasta -t /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121549.1-1684.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121549.1-1684.comp30239_c2_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/comp41249_c0_seq18.for.2568-3366.0.fasta -t /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121549.2568-3366.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121549.2568-3366.comp41249_c0_seq18.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/comp41249_c0_seq11.for.2529-3366.0.fasta -t /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121549.2529-3366.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121549.2529-3366.comp41249_c0_seq11.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/comp41249_c0_seq21.for.2568-3366.0.fasta -t /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121549.2568-3366.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121549.2568-3366.comp41249_c0_seq21.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/comp41249_c0_seq12.for.2529-3366.0.fasta -t /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121549.2529-3366.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121549.2529-3366.comp41249_c0_seq12.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/comp41249_c0_seq2.for.2479-3366.0.fasta -t /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121549.2479-3366.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121549.2479-3366.comp41249_c0_seq2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/comp41249_c0_seq23.for.2154-3366.0.fasta -t /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121549.2154-3366.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121549.2154-3366.comp41249_c0_seq23.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/comp41249_c0_seq13.for.2154-3366.0.fasta -t /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121549.2154-3366.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121549.2154-3366.comp41249_c0_seq13.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/comp41249_c0_seq4.for.2479-3366.0.fasta -t /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121549.2479-3366.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121549.2479-3366.comp41249_c0_seq4.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/comp41249_c0_seq5.for.2154-3366.0.fasta -t /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121549.2154-3366.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121549.2154-3366.comp41249_c0_seq5.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/comp41249_c0_seq15.for.2574-3366.0.fasta -t /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121549.2574-3366.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121549.2574-3366.comp41249_c0_seq15.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/comp41249_c0_seq17.for.2673-3366.0.fasta -t /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121549.2673-3366.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121549.2673-3366.comp41249_c0_seq17.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:3 now processing 0 total clusters:3 now processing 0 ...processing 0 of 8 ...processing 1 of 8 ...processing 2 of 8 ...processing 3 of 8 ...processing 4 of 8 ...processing 5 of 8 ...processing 6 of 8 ...processing 7 of 8 total clusters:3 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121549.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/E5/CC/Contig121549//theVoid.Contig121549/0/Contig121549.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121549.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/E5/CC/Contig121549//theVoid.Contig121549/0/Contig121549.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121549.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/E5/CC/Contig121549//theVoid.Contig121549/0/Contig121549.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121549.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/E5/CC/Contig121549//theVoid.Contig121549/0/Contig121549.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121549.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/E5/CC/Contig121549//theVoid.Contig121549/0/Contig121549.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121549.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/E5/CC/Contig121549//theVoid.Contig121549/0/Contig121549.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121549.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/E5/CC/Contig121549//theVoid.Contig121549/0/Contig121549.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121549.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/E5/CC/Contig121549//theVoid.Contig121549/0/Contig121549.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121549.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/E5/CC/Contig121549//theVoid.Contig121549/0/Contig121549.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121549.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/E5/CC/Contig121549//theVoid.Contig121549/0/Contig121549.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig121551 Length: 2715 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/DA/86/Contig121551//theVoid.Contig121551/0/Contig121551.0.all.rb -species all -dir /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/DA/86/Contig121551//theVoid.Contig121551/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121551.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/DA/86/Contig121551//theVoid.Contig121551/0/Contig121551.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121551.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/DA/86/Contig121551//theVoid.Contig121551/0/Contig121551.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121551.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/DA/86/Contig121551//theVoid.Contig121551/0/Contig121551.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121551.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/DA/86/Contig121551//theVoid.Contig121551/0/Contig121551.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121551.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/DA/86/Contig121551//theVoid.Contig121551/0/Contig121551.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121551.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/DA/86/Contig121551//theVoid.Contig121551/0/Contig121551.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121551.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/DA/86/Contig121551//theVoid.Contig121551/0/Contig121551.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121551.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/DA/86/Contig121551//theVoid.Contig121551/0/Contig121551.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121551.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/DA/86/Contig121551//theVoid.Contig121551/0/Contig121551.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121551.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/DA/86/Contig121551//theVoid.Contig121551/0/Contig121551.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121551.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/DA/86/Contig121551//theVoid.Contig121551/0/Contig121551.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121551.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/DA/86/Contig121551//theVoid.Contig121551/0/Contig121551.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121551.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/DA/86/Contig121551//theVoid.Contig121551/0/Contig121551.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121551.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/DA/86/Contig121551//theVoid.Contig121551/0/Contig121551.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121551.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/DA/86/Contig121551//theVoid.Contig121551/0/Contig121551.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121551.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/DA/86/Contig121551//theVoid.Contig121551/0/Contig121551.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121551.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/DA/86/Contig121551//theVoid.Contig121551/0/Contig121551.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121551.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/DA/86/Contig121551//theVoid.Contig121551/0/Contig121551.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121551.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/DA/86/Contig121551//theVoid.Contig121551/0/Contig121551.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121551.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/DA/86/Contig121551//theVoid.Contig121551/0/Contig121551.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig121552 Length: 1954 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/E4/DA/Contig121552//theVoid.Contig121552/0/Contig121552.0.all.rb -species all -dir /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/E4/DA/Contig121552//theVoid.Contig121552/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121552.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/E4/DA/Contig121552//theVoid.Contig121552/0/Contig121552.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121552.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/E4/DA/Contig121552//theVoid.Contig121552/0/Contig121552.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121552.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/E4/DA/Contig121552//theVoid.Contig121552/0/Contig121552.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121552.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/E4/DA/Contig121552//theVoid.Contig121552/0/Contig121552.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121552.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/E4/DA/Contig121552//theVoid.Contig121552/0/Contig121552.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121552.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/E4/DA/Contig121552//theVoid.Contig121552/0/Contig121552.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121552.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/E4/DA/Contig121552//theVoid.Contig121552/0/Contig121552.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121552.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/E4/DA/Contig121552//theVoid.Contig121552/0/Contig121552.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121552.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/E4/DA/Contig121552//theVoid.Contig121552/0/Contig121552.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121552.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/E4/DA/Contig121552//theVoid.Contig121552/0/Contig121552.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/comp40122_c3_seq3.for.1-667.0.fasta -t /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121552.1-667.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121552.1-667.comp40122_c3_seq3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/comp40122_c3_seq8.for.1-667.0.fasta -t /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121552.1-667.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121552.1-667.comp40122_c3_seq8.e.exonerate #-------------------------------# cleaning blastn... flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121552.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/E4/DA/Contig121552//theVoid.Contig121552/0/Contig121552.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121552.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/E4/DA/Contig121552//theVoid.Contig121552/0/Contig121552.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121552.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/E4/DA/Contig121552//theVoid.Contig121552/0/Contig121552.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121552.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/E4/DA/Contig121552//theVoid.Contig121552/0/Contig121552.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121552.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/E4/DA/Contig121552//theVoid.Contig121552/0/Contig121552.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121552.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/E4/DA/Contig121552//theVoid.Contig121552/0/Contig121552.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121552.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/E4/DA/Contig121552//theVoid.Contig121552/0/Contig121552.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121552.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/E4/DA/Contig121552//theVoid.Contig121552/0/Contig121552.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121552.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/E4/DA/Contig121552//theVoid.Contig121552/0/Contig121552.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121552.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/E4/DA/Contig121552//theVoid.Contig121552/0/Contig121552.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig121553 Length: 2205 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/7B/F1/Contig121553//theVoid.Contig121553/0/Contig121553.0.all.rb -species all -dir /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/7B/F1/Contig121553//theVoid.Contig121553/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121553.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/7B/F1/Contig121553//theVoid.Contig121553/0/Contig121553.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121553.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/7B/F1/Contig121553//theVoid.Contig121553/0/Contig121553.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121553.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/7B/F1/Contig121553//theVoid.Contig121553/0/Contig121553.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121553.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/7B/F1/Contig121553//theVoid.Contig121553/0/Contig121553.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121553.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/7B/F1/Contig121553//theVoid.Contig121553/0/Contig121553.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121553.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/7B/F1/Contig121553//theVoid.Contig121553/0/Contig121553.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121553.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/7B/F1/Contig121553//theVoid.Contig121553/0/Contig121553.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121553.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/7B/F1/Contig121553//theVoid.Contig121553/0/Contig121553.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121553.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/7B/F1/Contig121553//theVoid.Contig121553/0/Contig121553.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121553.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/7B/F1/Contig121553//theVoid.Contig121553/0/Contig121553.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121553.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/7B/F1/Contig121553//theVoid.Contig121553/0/Contig121553.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121553.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/7B/F1/Contig121553//theVoid.Contig121553/0/Contig121553.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121553.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/7B/F1/Contig121553//theVoid.Contig121553/0/Contig121553.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121553.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/7B/F1/Contig121553//theVoid.Contig121553/0/Contig121553.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121553.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/7B/F1/Contig121553//theVoid.Contig121553/0/Contig121553.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121553.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/7B/F1/Contig121553//theVoid.Contig121553/0/Contig121553.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121553.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/7B/F1/Contig121553//theVoid.Contig121553/0/Contig121553.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121553.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/7B/F1/Contig121553//theVoid.Contig121553/0/Contig121553.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121553.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/7B/F1/Contig121553//theVoid.Contig121553/0/Contig121553.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.47/cctools-temp-t.47.BYplFo/maker_YAHzZX/0/Contig121553.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.47/Olurida_v081.maker.output/Olurida_v081_datastore/7B/F1/Contig121553//theVoid.Contig121553/0/Contig121553.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:1 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output Maker is now finished!!! Start_time: 1533652886 End_time: 1533653168 Elapsed: 282 ================================= Argument "2.53_01" isn't numeric in numeric ge (>=) at /usr/local/lib/x86_64-linux-gnu/perl/5.22.1/forks.pm line 1570. Unknown option: debug_size_limit STATUS: Parsing control files... STATUS: Processing and indexing input FASTA files... STATUS: Setting up database for any GFF3 input... A data structure will be created for you at: /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore To access files for individual sequences use the datastore index: /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_master_datastore_index.log STATUS: Now running MAKER... examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig137119 Length: 4671 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/26/4B/Contig137119//theVoid.Contig137119/0/Contig137119.0.all.rb -species all -dir /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/26/4B/Contig137119//theVoid.Contig137119/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137119.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/26/4B/Contig137119//theVoid.Contig137119/0/Contig137119.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137119.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/26/4B/Contig137119//theVoid.Contig137119/0/Contig137119.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137119.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/26/4B/Contig137119//theVoid.Contig137119/0/Contig137119.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137119.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/26/4B/Contig137119//theVoid.Contig137119/0/Contig137119.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137119.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/26/4B/Contig137119//theVoid.Contig137119/0/Contig137119.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137119.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/26/4B/Contig137119//theVoid.Contig137119/0/Contig137119.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137119.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/26/4B/Contig137119//theVoid.Contig137119/0/Contig137119.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137119.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/26/4B/Contig137119//theVoid.Contig137119/0/Contig137119.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137119.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/26/4B/Contig137119//theVoid.Contig137119/0/Contig137119.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137119.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/26/4B/Contig137119//theVoid.Contig137119/0/Contig137119.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137119.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/26/4B/Contig137119//theVoid.Contig137119/0/Contig137119.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137119.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/26/4B/Contig137119//theVoid.Contig137119/0/Contig137119.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137119.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/26/4B/Contig137119//theVoid.Contig137119/0/Contig137119.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137119.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/26/4B/Contig137119//theVoid.Contig137119/0/Contig137119.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137119.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/26/4B/Contig137119//theVoid.Contig137119/0/Contig137119.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137119.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/26/4B/Contig137119//theVoid.Contig137119/0/Contig137119.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137119.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/26/4B/Contig137119//theVoid.Contig137119/0/Contig137119.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137119.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/26/4B/Contig137119//theVoid.Contig137119/0/Contig137119.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137119.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/26/4B/Contig137119//theVoid.Contig137119/0/Contig137119.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137119.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/26/4B/Contig137119//theVoid.Contig137119/0/Contig137119.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig137120 Length: 1207 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/85/3F/Contig137120//theVoid.Contig137120/0/Contig137120.0.all.rb -species all -dir /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/85/3F/Contig137120//theVoid.Contig137120/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137120.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/85/3F/Contig137120//theVoid.Contig137120/0/Contig137120.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137120.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/85/3F/Contig137120//theVoid.Contig137120/0/Contig137120.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137120.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/85/3F/Contig137120//theVoid.Contig137120/0/Contig137120.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137120.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/85/3F/Contig137120//theVoid.Contig137120/0/Contig137120.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137120.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/85/3F/Contig137120//theVoid.Contig137120/0/Contig137120.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137120.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/85/3F/Contig137120//theVoid.Contig137120/0/Contig137120.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137120.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/85/3F/Contig137120//theVoid.Contig137120/0/Contig137120.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137120.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/85/3F/Contig137120//theVoid.Contig137120/0/Contig137120.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137120.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/85/3F/Contig137120//theVoid.Contig137120/0/Contig137120.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137120.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/85/3F/Contig137120//theVoid.Contig137120/0/Contig137120.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137120.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/85/3F/Contig137120//theVoid.Contig137120/0/Contig137120.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137120.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/85/3F/Contig137120//theVoid.Contig137120/0/Contig137120.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137120.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/85/3F/Contig137120//theVoid.Contig137120/0/Contig137120.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137120.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/85/3F/Contig137120//theVoid.Contig137120/0/Contig137120.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137120.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/85/3F/Contig137120//theVoid.Contig137120/0/Contig137120.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137120.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/85/3F/Contig137120//theVoid.Contig137120/0/Contig137120.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137120.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/85/3F/Contig137120//theVoid.Contig137120/0/Contig137120.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137120.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/85/3F/Contig137120//theVoid.Contig137120/0/Contig137120.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137120.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/85/3F/Contig137120//theVoid.Contig137120/0/Contig137120.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137120.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/85/3F/Contig137120//theVoid.Contig137120/0/Contig137120.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig137121 Length: 1110 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/9D/04/Contig137121//theVoid.Contig137121/0/Contig137121.0.all.rb -species all -dir /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/9D/04/Contig137121//theVoid.Contig137121/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137121.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/9D/04/Contig137121//theVoid.Contig137121/0/Contig137121.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137121.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/9D/04/Contig137121//theVoid.Contig137121/0/Contig137121.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137121.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/9D/04/Contig137121//theVoid.Contig137121/0/Contig137121.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137121.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/9D/04/Contig137121//theVoid.Contig137121/0/Contig137121.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137121.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/9D/04/Contig137121//theVoid.Contig137121/0/Contig137121.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137121.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/9D/04/Contig137121//theVoid.Contig137121/0/Contig137121.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137121.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/9D/04/Contig137121//theVoid.Contig137121/0/Contig137121.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137121.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/9D/04/Contig137121//theVoid.Contig137121/0/Contig137121.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137121.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/9D/04/Contig137121//theVoid.Contig137121/0/Contig137121.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137121.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/9D/04/Contig137121//theVoid.Contig137121/0/Contig137121.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137121.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/9D/04/Contig137121//theVoid.Contig137121/0/Contig137121.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137121.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/9D/04/Contig137121//theVoid.Contig137121/0/Contig137121.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137121.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/9D/04/Contig137121//theVoid.Contig137121/0/Contig137121.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137121.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/9D/04/Contig137121//theVoid.Contig137121/0/Contig137121.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137121.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/9D/04/Contig137121//theVoid.Contig137121/0/Contig137121.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137121.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/9D/04/Contig137121//theVoid.Contig137121/0/Contig137121.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137121.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/9D/04/Contig137121//theVoid.Contig137121/0/Contig137121.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137121.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/9D/04/Contig137121//theVoid.Contig137121/0/Contig137121.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137121.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/9D/04/Contig137121//theVoid.Contig137121/0/Contig137121.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137121.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/9D/04/Contig137121//theVoid.Contig137121/0/Contig137121.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig137122 Length: 1348 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/FB/54/Contig137122//theVoid.Contig137122/0/Contig137122.0.all.rb -species all -dir /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/FB/54/Contig137122//theVoid.Contig137122/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137122.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/FB/54/Contig137122//theVoid.Contig137122/0/Contig137122.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137122.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/FB/54/Contig137122//theVoid.Contig137122/0/Contig137122.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137122.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/FB/54/Contig137122//theVoid.Contig137122/0/Contig137122.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137122.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/FB/54/Contig137122//theVoid.Contig137122/0/Contig137122.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137122.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/FB/54/Contig137122//theVoid.Contig137122/0/Contig137122.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137122.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/FB/54/Contig137122//theVoid.Contig137122/0/Contig137122.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137122.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/FB/54/Contig137122//theVoid.Contig137122/0/Contig137122.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137122.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/FB/54/Contig137122//theVoid.Contig137122/0/Contig137122.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137122.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/FB/54/Contig137122//theVoid.Contig137122/0/Contig137122.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137122.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/FB/54/Contig137122//theVoid.Contig137122/0/Contig137122.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137122.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/FB/54/Contig137122//theVoid.Contig137122/0/Contig137122.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137122.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/FB/54/Contig137122//theVoid.Contig137122/0/Contig137122.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137122.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/FB/54/Contig137122//theVoid.Contig137122/0/Contig137122.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137122.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/FB/54/Contig137122//theVoid.Contig137122/0/Contig137122.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137122.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/FB/54/Contig137122//theVoid.Contig137122/0/Contig137122.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137122.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/FB/54/Contig137122//theVoid.Contig137122/0/Contig137122.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137122.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/FB/54/Contig137122//theVoid.Contig137122/0/Contig137122.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137122.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/FB/54/Contig137122//theVoid.Contig137122/0/Contig137122.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137122.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/FB/54/Contig137122//theVoid.Contig137122/0/Contig137122.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137122.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/FB/54/Contig137122//theVoid.Contig137122/0/Contig137122.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig137123 Length: 8608 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/45/AB/Contig137123//theVoid.Contig137123/0/Contig137123.0.all.rb -species all -dir /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/45/AB/Contig137123//theVoid.Contig137123/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137123.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/45/AB/Contig137123//theVoid.Contig137123/0/Contig137123.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137123.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/45/AB/Contig137123//theVoid.Contig137123/0/Contig137123.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137123.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/45/AB/Contig137123//theVoid.Contig137123/0/Contig137123.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137123.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/45/AB/Contig137123//theVoid.Contig137123/0/Contig137123.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137123.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/45/AB/Contig137123//theVoid.Contig137123/0/Contig137123.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137123.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/45/AB/Contig137123//theVoid.Contig137123/0/Contig137123.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137123.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/45/AB/Contig137123//theVoid.Contig137123/0/Contig137123.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137123.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/45/AB/Contig137123//theVoid.Contig137123/0/Contig137123.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137123.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/45/AB/Contig137123//theVoid.Contig137123/0/Contig137123.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137123.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/45/AB/Contig137123//theVoid.Contig137123/0/Contig137123.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/comp36112_c1_seq1.for.3888-4909.0.fasta -t /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137123.3888-4909.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137123.3888-4909.comp36112_c1_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/comp41949_c0_seq1.for.4594-5798.0.fasta -t /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137123.4594-5798.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137123.4594-5798.comp41949_c0_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/comp41949_c0_seq2.for.4594-5798.0.fasta -t /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137123.4594-5798.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137123.4594-5798.comp41949_c0_seq2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/comp14264_c0_seq1.for.7908-8608.0.fasta -t /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137123.7908-8608.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137123.7908-8608.comp14264_c0_seq1.e.exonerate #-------------------------------# cleaning blastn... cleaning clusters.... total clusters:1 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137123.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/45/AB/Contig137123//theVoid.Contig137123/0/Contig137123.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137123.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/45/AB/Contig137123//theVoid.Contig137123/0/Contig137123.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137123.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/45/AB/Contig137123//theVoid.Contig137123/0/Contig137123.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137123.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/45/AB/Contig137123//theVoid.Contig137123/0/Contig137123.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137123.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/45/AB/Contig137123//theVoid.Contig137123/0/Contig137123.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137123.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/45/AB/Contig137123//theVoid.Contig137123/0/Contig137123.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137123.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/45/AB/Contig137123//theVoid.Contig137123/0/Contig137123.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137123.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/45/AB/Contig137123//theVoid.Contig137123/0/Contig137123.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137123.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/45/AB/Contig137123//theVoid.Contig137123/0/Contig137123.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137123.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/45/AB/Contig137123//theVoid.Contig137123/0/Contig137123.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/XP_022309523%2E1.for.1641-2815.0.fasta -t /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137123.1641-2815.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137123.1641-2815.XP_022309523%2E1.p.exonerate #-------------------------------# cleaning blastx... flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig137124 Length: 2352 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/FB/CB/Contig137124//theVoid.Contig137124/0/Contig137124.0.all.rb -species all -dir /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/FB/CB/Contig137124//theVoid.Contig137124/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137124.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/FB/CB/Contig137124//theVoid.Contig137124/0/Contig137124.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137124.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/FB/CB/Contig137124//theVoid.Contig137124/0/Contig137124.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137124.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/FB/CB/Contig137124//theVoid.Contig137124/0/Contig137124.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137124.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/FB/CB/Contig137124//theVoid.Contig137124/0/Contig137124.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137124.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/FB/CB/Contig137124//theVoid.Contig137124/0/Contig137124.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137124.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/FB/CB/Contig137124//theVoid.Contig137124/0/Contig137124.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137124.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/FB/CB/Contig137124//theVoid.Contig137124/0/Contig137124.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137124.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/FB/CB/Contig137124//theVoid.Contig137124/0/Contig137124.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137124.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/FB/CB/Contig137124//theVoid.Contig137124/0/Contig137124.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137124.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/FB/CB/Contig137124//theVoid.Contig137124/0/Contig137124.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137124.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/FB/CB/Contig137124//theVoid.Contig137124/0/Contig137124.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137124.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/FB/CB/Contig137124//theVoid.Contig137124/0/Contig137124.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137124.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/FB/CB/Contig137124//theVoid.Contig137124/0/Contig137124.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137124.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/FB/CB/Contig137124//theVoid.Contig137124/0/Contig137124.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137124.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/FB/CB/Contig137124//theVoid.Contig137124/0/Contig137124.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137124.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/FB/CB/Contig137124//theVoid.Contig137124/0/Contig137124.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137124.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/FB/CB/Contig137124//theVoid.Contig137124/0/Contig137124.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137124.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/FB/CB/Contig137124//theVoid.Contig137124/0/Contig137124.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137124.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/FB/CB/Contig137124//theVoid.Contig137124/0/Contig137124.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137124.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/FB/CB/Contig137124//theVoid.Contig137124/0/Contig137124.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig137126 Length: 2071 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/91/A4/Contig137126//theVoid.Contig137126/0/Contig137126.0.all.rb -species all -dir /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/91/A4/Contig137126//theVoid.Contig137126/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137126.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/91/A4/Contig137126//theVoid.Contig137126/0/Contig137126.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137126.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/91/A4/Contig137126//theVoid.Contig137126/0/Contig137126.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137126.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/91/A4/Contig137126//theVoid.Contig137126/0/Contig137126.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137126.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/91/A4/Contig137126//theVoid.Contig137126/0/Contig137126.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137126.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/91/A4/Contig137126//theVoid.Contig137126/0/Contig137126.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137126.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/91/A4/Contig137126//theVoid.Contig137126/0/Contig137126.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137126.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/91/A4/Contig137126//theVoid.Contig137126/0/Contig137126.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137126.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/91/A4/Contig137126//theVoid.Contig137126/0/Contig137126.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137126.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/91/A4/Contig137126//theVoid.Contig137126/0/Contig137126.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137126.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/91/A4/Contig137126//theVoid.Contig137126/0/Contig137126.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137126.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/91/A4/Contig137126//theVoid.Contig137126/0/Contig137126.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137126.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/91/A4/Contig137126//theVoid.Contig137126/0/Contig137126.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137126.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/91/A4/Contig137126//theVoid.Contig137126/0/Contig137126.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137126.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/91/A4/Contig137126//theVoid.Contig137126/0/Contig137126.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137126.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/91/A4/Contig137126//theVoid.Contig137126/0/Contig137126.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137126.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/91/A4/Contig137126//theVoid.Contig137126/0/Contig137126.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137126.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/91/A4/Contig137126//theVoid.Contig137126/0/Contig137126.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137126.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/91/A4/Contig137126//theVoid.Contig137126/0/Contig137126.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137126.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/91/A4/Contig137126//theVoid.Contig137126/0/Contig137126.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137126.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/91/A4/Contig137126//theVoid.Contig137126/0/Contig137126.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig137127 Length: 1302 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/8C/1D/Contig137127//theVoid.Contig137127/0/Contig137127.0.all.rb -species all -dir /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/8C/1D/Contig137127//theVoid.Contig137127/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137127.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/8C/1D/Contig137127//theVoid.Contig137127/0/Contig137127.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137127.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/8C/1D/Contig137127//theVoid.Contig137127/0/Contig137127.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137127.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/8C/1D/Contig137127//theVoid.Contig137127/0/Contig137127.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137127.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/8C/1D/Contig137127//theVoid.Contig137127/0/Contig137127.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137127.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/8C/1D/Contig137127//theVoid.Contig137127/0/Contig137127.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137127.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/8C/1D/Contig137127//theVoid.Contig137127/0/Contig137127.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137127.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/8C/1D/Contig137127//theVoid.Contig137127/0/Contig137127.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137127.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/8C/1D/Contig137127//theVoid.Contig137127/0/Contig137127.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137127.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/8C/1D/Contig137127//theVoid.Contig137127/0/Contig137127.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137127.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/8C/1D/Contig137127//theVoid.Contig137127/0/Contig137127.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137127.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/8C/1D/Contig137127//theVoid.Contig137127/0/Contig137127.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137127.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/8C/1D/Contig137127//theVoid.Contig137127/0/Contig137127.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137127.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/8C/1D/Contig137127//theVoid.Contig137127/0/Contig137127.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137127.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/8C/1D/Contig137127//theVoid.Contig137127/0/Contig137127.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137127.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/8C/1D/Contig137127//theVoid.Contig137127/0/Contig137127.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137127.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/8C/1D/Contig137127//theVoid.Contig137127/0/Contig137127.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137127.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/8C/1D/Contig137127//theVoid.Contig137127/0/Contig137127.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137127.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/8C/1D/Contig137127//theVoid.Contig137127/0/Contig137127.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137127.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/8C/1D/Contig137127//theVoid.Contig137127/0/Contig137127.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137127.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/8C/1D/Contig137127//theVoid.Contig137127/0/Contig137127.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig137128 Length: 1110 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/84/96/Contig137128//theVoid.Contig137128/0/Contig137128.0.all.rb -species all -dir /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/84/96/Contig137128//theVoid.Contig137128/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137128.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/84/96/Contig137128//theVoid.Contig137128/0/Contig137128.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137128.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/84/96/Contig137128//theVoid.Contig137128/0/Contig137128.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137128.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/84/96/Contig137128//theVoid.Contig137128/0/Contig137128.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137128.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/84/96/Contig137128//theVoid.Contig137128/0/Contig137128.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137128.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/84/96/Contig137128//theVoid.Contig137128/0/Contig137128.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137128.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/84/96/Contig137128//theVoid.Contig137128/0/Contig137128.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137128.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/84/96/Contig137128//theVoid.Contig137128/0/Contig137128.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137128.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/84/96/Contig137128//theVoid.Contig137128/0/Contig137128.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137128.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/84/96/Contig137128//theVoid.Contig137128/0/Contig137128.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137128.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/84/96/Contig137128//theVoid.Contig137128/0/Contig137128.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137128.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/84/96/Contig137128//theVoid.Contig137128/0/Contig137128.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137128.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/84/96/Contig137128//theVoid.Contig137128/0/Contig137128.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137128.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/84/96/Contig137128//theVoid.Contig137128/0/Contig137128.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137128.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/84/96/Contig137128//theVoid.Contig137128/0/Contig137128.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137128.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/84/96/Contig137128//theVoid.Contig137128/0/Contig137128.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137128.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/84/96/Contig137128//theVoid.Contig137128/0/Contig137128.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137128.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/84/96/Contig137128//theVoid.Contig137128/0/Contig137128.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137128.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/84/96/Contig137128//theVoid.Contig137128/0/Contig137128.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137128.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/84/96/Contig137128//theVoid.Contig137128/0/Contig137128.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137128.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/84/96/Contig137128//theVoid.Contig137128/0/Contig137128.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig137129 Length: 4624 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/21/07/Contig137129//theVoid.Contig137129/0/Contig137129.0.all.rb -species all -dir /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/21/07/Contig137129//theVoid.Contig137129/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137129.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/21/07/Contig137129//theVoid.Contig137129/0/Contig137129.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137129.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/21/07/Contig137129//theVoid.Contig137129/0/Contig137129.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137129.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/21/07/Contig137129//theVoid.Contig137129/0/Contig137129.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137129.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/21/07/Contig137129//theVoid.Contig137129/0/Contig137129.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137129.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/21/07/Contig137129//theVoid.Contig137129/0/Contig137129.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137129.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/21/07/Contig137129//theVoid.Contig137129/0/Contig137129.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137129.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/21/07/Contig137129//theVoid.Contig137129/0/Contig137129.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137129.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/21/07/Contig137129//theVoid.Contig137129/0/Contig137129.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137129.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/21/07/Contig137129//theVoid.Contig137129/0/Contig137129.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137129.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/21/07/Contig137129//theVoid.Contig137129/0/Contig137129.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:5 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137129.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/21/07/Contig137129//theVoid.Contig137129/0/Contig137129.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137129.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/21/07/Contig137129//theVoid.Contig137129/0/Contig137129.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137129.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/21/07/Contig137129//theVoid.Contig137129/0/Contig137129.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137129.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/21/07/Contig137129//theVoid.Contig137129/0/Contig137129.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137129.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/21/07/Contig137129//theVoid.Contig137129/0/Contig137129.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137129.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/21/07/Contig137129//theVoid.Contig137129/0/Contig137129.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137129.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/21/07/Contig137129//theVoid.Contig137129/0/Contig137129.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137129.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/21/07/Contig137129//theVoid.Contig137129/0/Contig137129.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137129.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/21/07/Contig137129//theVoid.Contig137129/0/Contig137129.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.45/cctools-temp-t.45.X02TEH/maker_psDgZm/0/Contig137129.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.45/Olurida_v081.maker.output/Olurida_v081_datastore/21/07/Contig137129//theVoid.Contig137129/0/Contig137129.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output Maker is now finished!!! Start_time: 1533652886 End_time: 1533653173 Elapsed: 287 ================================= Argument "2.53_01" isn't numeric in numeric ge (>=) at /usr/local/lib/x86_64-linux-gnu/perl/5.22.1/forks.pm line 1570. Unknown option: debug_size_limit STATUS: Parsing control files... STATUS: Processing and indexing input FASTA files... STATUS: Setting up database for any GFF3 input... A data structure will be created for you at: /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore To access files for individual sequences use the datastore index: /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_master_datastore_index.log STATUS: Now running MAKER... examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig68332 Length: 3778 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/5A/64/Contig68332//theVoid.Contig68332/0/Contig68332.0.all.rb -species all -dir /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/5A/64/Contig68332//theVoid.Contig68332/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68332.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/5A/64/Contig68332//theVoid.Contig68332/0/Contig68332.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68332.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/5A/64/Contig68332//theVoid.Contig68332/0/Contig68332.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68332.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/5A/64/Contig68332//theVoid.Contig68332/0/Contig68332.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68332.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/5A/64/Contig68332//theVoid.Contig68332/0/Contig68332.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68332.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/5A/64/Contig68332//theVoid.Contig68332/0/Contig68332.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68332.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/5A/64/Contig68332//theVoid.Contig68332/0/Contig68332.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68332.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/5A/64/Contig68332//theVoid.Contig68332/0/Contig68332.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68332.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/5A/64/Contig68332//theVoid.Contig68332/0/Contig68332.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68332.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/5A/64/Contig68332//theVoid.Contig68332/0/Contig68332.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68332.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/5A/64/Contig68332//theVoid.Contig68332/0/Contig68332.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/comp22886_c0_seq1.for.927-2138.0.fasta -t /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68332.927-2138.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68332.927-2138.comp22886_c0_seq1.e.exonerate #-------------------------------# cleaning blastn... flattening EST clusters doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68332.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/5A/64/Contig68332//theVoid.Contig68332/0/Contig68332.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:1 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68332.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/5A/64/Contig68332//theVoid.Contig68332/0/Contig68332.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:1 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68332.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/5A/64/Contig68332//theVoid.Contig68332/0/Contig68332.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68332.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/5A/64/Contig68332//theVoid.Contig68332/0/Contig68332.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68332.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/5A/64/Contig68332//theVoid.Contig68332/0/Contig68332.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68332.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/5A/64/Contig68332//theVoid.Contig68332/0/Contig68332.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:2 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68332.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/5A/64/Contig68332//theVoid.Contig68332/0/Contig68332.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68332.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/5A/64/Contig68332//theVoid.Contig68332/0/Contig68332.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68332.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/5A/64/Contig68332//theVoid.Contig68332/0/Contig68332.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:1 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68332.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/5A/64/Contig68332//theVoid.Contig68332/0/Contig68332.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig68333 Length: 2086 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/C3/8E/Contig68333//theVoid.Contig68333/0/Contig68333.0.all.rb -species all -dir /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/C3/8E/Contig68333//theVoid.Contig68333/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68333.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/C3/8E/Contig68333//theVoid.Contig68333/0/Contig68333.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68333.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/C3/8E/Contig68333//theVoid.Contig68333/0/Contig68333.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68333.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/C3/8E/Contig68333//theVoid.Contig68333/0/Contig68333.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68333.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/C3/8E/Contig68333//theVoid.Contig68333/0/Contig68333.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68333.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/C3/8E/Contig68333//theVoid.Contig68333/0/Contig68333.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68333.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/C3/8E/Contig68333//theVoid.Contig68333/0/Contig68333.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68333.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/C3/8E/Contig68333//theVoid.Contig68333/0/Contig68333.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68333.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/C3/8E/Contig68333//theVoid.Contig68333/0/Contig68333.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68333.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/C3/8E/Contig68333//theVoid.Contig68333/0/Contig68333.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68333.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/C3/8E/Contig68333//theVoid.Contig68333/0/Contig68333.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68333.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/C3/8E/Contig68333//theVoid.Contig68333/0/Contig68333.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68333.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/C3/8E/Contig68333//theVoid.Contig68333/0/Contig68333.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68333.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/C3/8E/Contig68333//theVoid.Contig68333/0/Contig68333.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68333.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/C3/8E/Contig68333//theVoid.Contig68333/0/Contig68333.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68333.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/C3/8E/Contig68333//theVoid.Contig68333/0/Contig68333.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68333.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/C3/8E/Contig68333//theVoid.Contig68333/0/Contig68333.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68333.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/C3/8E/Contig68333//theVoid.Contig68333/0/Contig68333.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68333.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/C3/8E/Contig68333//theVoid.Contig68333/0/Contig68333.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68333.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/C3/8E/Contig68333//theVoid.Contig68333/0/Contig68333.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68333.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/C3/8E/Contig68333//theVoid.Contig68333/0/Contig68333.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig68334 Length: 9280 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/EE/96/Contig68334//theVoid.Contig68334/0/Contig68334.0.all.rb -species all -dir /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/EE/96/Contig68334//theVoid.Contig68334/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68334.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/EE/96/Contig68334//theVoid.Contig68334/0/Contig68334.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68334.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/EE/96/Contig68334//theVoid.Contig68334/0/Contig68334.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68334.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/EE/96/Contig68334//theVoid.Contig68334/0/Contig68334.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68334.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/EE/96/Contig68334//theVoid.Contig68334/0/Contig68334.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68334.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/EE/96/Contig68334//theVoid.Contig68334/0/Contig68334.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68334.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/EE/96/Contig68334//theVoid.Contig68334/0/Contig68334.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68334.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/EE/96/Contig68334//theVoid.Contig68334/0/Contig68334.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68334.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/EE/96/Contig68334//theVoid.Contig68334/0/Contig68334.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68334.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/EE/96/Contig68334//theVoid.Contig68334/0/Contig68334.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68334.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/EE/96/Contig68334//theVoid.Contig68334/0/Contig68334.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/comp1284_c0_seq1.for.6338-7345.0.fasta -t /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68334.6338-7345.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68334.6338-7345.comp1284_c0_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/comp36613_c0_seq2.for.1245-9280.0.fasta -t /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68334.1245-9280.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68334.1245-9280.comp36613_c0_seq2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/comp36613_c0_seq3.for.1245-9280.0.fasta -t /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68334.1245-9280.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68334.1245-9280.comp36613_c0_seq3.e.exonerate #-------------------------------# cleaning blastn... cleaning clusters.... total clusters:1 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68334.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/EE/96/Contig68334//theVoid.Contig68334/0/Contig68334.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68334.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/EE/96/Contig68334//theVoid.Contig68334/0/Contig68334.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68334.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/EE/96/Contig68334//theVoid.Contig68334/0/Contig68334.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68334.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/EE/96/Contig68334//theVoid.Contig68334/0/Contig68334.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68334.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/EE/96/Contig68334//theVoid.Contig68334/0/Contig68334.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68334.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/EE/96/Contig68334//theVoid.Contig68334/0/Contig68334.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68334.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/EE/96/Contig68334//theVoid.Contig68334/0/Contig68334.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68334.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/EE/96/Contig68334//theVoid.Contig68334/0/Contig68334.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68334.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/EE/96/Contig68334//theVoid.Contig68334/0/Contig68334.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68334.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/EE/96/Contig68334//theVoid.Contig68334/0/Contig68334.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/EKC18744%2E1.for.3838-9280.0.fasta -t /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68334.3838-9280.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68334.3838-9280.EKC18744%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/XP_022331166%2E1.for.3838-9280.0.fasta -t /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68334.3838-9280.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68334.3838-9280.XP_022331166%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/XP_022331167%2E1.for.3838-9280.0.fasta -t /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68334.3838-9280.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68334.3838-9280.XP_022331167%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/XP_022331168%2E1.for.3838-9280.0.fasta -t /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68334.3838-9280.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68334.3838-9280.XP_022331168%2E1.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:1 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:1 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig68335 Length: 1382 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/64/E8/Contig68335//theVoid.Contig68335/0/Contig68335.0.all.rb -species all -dir /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/64/E8/Contig68335//theVoid.Contig68335/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68335.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/64/E8/Contig68335//theVoid.Contig68335/0/Contig68335.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68335.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/64/E8/Contig68335//theVoid.Contig68335/0/Contig68335.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68335.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/64/E8/Contig68335//theVoid.Contig68335/0/Contig68335.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68335.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/64/E8/Contig68335//theVoid.Contig68335/0/Contig68335.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68335.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/64/E8/Contig68335//theVoid.Contig68335/0/Contig68335.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68335.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/64/E8/Contig68335//theVoid.Contig68335/0/Contig68335.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68335.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/64/E8/Contig68335//theVoid.Contig68335/0/Contig68335.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68335.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/64/E8/Contig68335//theVoid.Contig68335/0/Contig68335.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68335.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/64/E8/Contig68335//theVoid.Contig68335/0/Contig68335.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68335.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/64/E8/Contig68335//theVoid.Contig68335/0/Contig68335.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68335.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/64/E8/Contig68335//theVoid.Contig68335/0/Contig68335.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68335.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/64/E8/Contig68335//theVoid.Contig68335/0/Contig68335.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68335.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/64/E8/Contig68335//theVoid.Contig68335/0/Contig68335.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68335.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/64/E8/Contig68335//theVoid.Contig68335/0/Contig68335.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68335.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/64/E8/Contig68335//theVoid.Contig68335/0/Contig68335.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68335.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/64/E8/Contig68335//theVoid.Contig68335/0/Contig68335.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68335.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/64/E8/Contig68335//theVoid.Contig68335/0/Contig68335.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68335.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/64/E8/Contig68335//theVoid.Contig68335/0/Contig68335.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68335.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/64/E8/Contig68335//theVoid.Contig68335/0/Contig68335.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68335.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/64/E8/Contig68335//theVoid.Contig68335/0/Contig68335.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig68336 Length: 1269 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/2A/13/Contig68336//theVoid.Contig68336/0/Contig68336.0.all.rb -species all -dir /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/2A/13/Contig68336//theVoid.Contig68336/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68336.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/2A/13/Contig68336//theVoid.Contig68336/0/Contig68336.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68336.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/2A/13/Contig68336//theVoid.Contig68336/0/Contig68336.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68336.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/2A/13/Contig68336//theVoid.Contig68336/0/Contig68336.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68336.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/2A/13/Contig68336//theVoid.Contig68336/0/Contig68336.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68336.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/2A/13/Contig68336//theVoid.Contig68336/0/Contig68336.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68336.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/2A/13/Contig68336//theVoid.Contig68336/0/Contig68336.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68336.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/2A/13/Contig68336//theVoid.Contig68336/0/Contig68336.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68336.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/2A/13/Contig68336//theVoid.Contig68336/0/Contig68336.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68336.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/2A/13/Contig68336//theVoid.Contig68336/0/Contig68336.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68336.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/2A/13/Contig68336//theVoid.Contig68336/0/Contig68336.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68336.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/2A/13/Contig68336//theVoid.Contig68336/0/Contig68336.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68336.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/2A/13/Contig68336//theVoid.Contig68336/0/Contig68336.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68336.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/2A/13/Contig68336//theVoid.Contig68336/0/Contig68336.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68336.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/2A/13/Contig68336//theVoid.Contig68336/0/Contig68336.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68336.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/2A/13/Contig68336//theVoid.Contig68336/0/Contig68336.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68336.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/2A/13/Contig68336//theVoid.Contig68336/0/Contig68336.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68336.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/2A/13/Contig68336//theVoid.Contig68336/0/Contig68336.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68336.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/2A/13/Contig68336//theVoid.Contig68336/0/Contig68336.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68336.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/2A/13/Contig68336//theVoid.Contig68336/0/Contig68336.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68336.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/2A/13/Contig68336//theVoid.Contig68336/0/Contig68336.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig68337 Length: 9680 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/54/74/Contig68337//theVoid.Contig68337/0/Contig68337.0.all.rb -species all -dir /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/54/74/Contig68337//theVoid.Contig68337/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68337.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/54/74/Contig68337//theVoid.Contig68337/0/Contig68337.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68337.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/54/74/Contig68337//theVoid.Contig68337/0/Contig68337.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68337.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/54/74/Contig68337//theVoid.Contig68337/0/Contig68337.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:7 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68337.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/54/74/Contig68337//theVoid.Contig68337/0/Contig68337.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68337.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/54/74/Contig68337//theVoid.Contig68337/0/Contig68337.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68337.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/54/74/Contig68337//theVoid.Contig68337/0/Contig68337.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68337.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/54/74/Contig68337//theVoid.Contig68337/0/Contig68337.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68337.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/54/74/Contig68337//theVoid.Contig68337/0/Contig68337.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68337.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/54/74/Contig68337//theVoid.Contig68337/0/Contig68337.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68337.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/54/74/Contig68337//theVoid.Contig68337/0/Contig68337.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:5 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/comp41412_c2_seq15.for.402-1371.0.fasta -t /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68337.402-1371.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68337.402-1371.comp41412_c2_seq15.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/comp41412_c2_seq6.for.402-1371.0.fasta -t /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68337.402-1371.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68337.402-1371.comp41412_c2_seq6.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/comp41412_c2_seq18.for.402-1552.0.fasta -t /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68337.402-1552.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68337.402-1552.comp41412_c2_seq18.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/comp41412_c2_seq8.for.402-1552.0.fasta -t /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68337.402-1552.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68337.402-1552.comp41412_c2_seq8.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/comp41412_c2_seq19.for.414-1552.0.fasta -t /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68337.414-1552.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68337.414-1552.comp41412_c2_seq19.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/comp41412_c2_seq9.for.479-1552.0.fasta -t /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68337.479-1552.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68337.479-1552.comp41412_c2_seq9.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/comp41412_c2_seq10.for.669-1599.0.fasta -t /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68337.669-1599.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68337.669-1599.comp41412_c2_seq10.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/comp41412_c2_seq4.for.572-1552.0.fasta -t /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68337.572-1552.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68337.572-1552.comp41412_c2_seq4.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/comp33977_c0_seq2.for.1383-2362.0.fasta -t /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68337.1383-2362.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68337.1383-2362.comp33977_c0_seq2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/comp33978_c0_seq2.for.2373-3310.0.fasta -t /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68337.2373-3310.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68337.2373-3310.comp33978_c0_seq2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/comp42457_c0_seq1.for.3096-8503.0.fasta -t /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68337.3096-8503.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68337.3096-8503.comp42457_c0_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/comp39100_c3_seq8.for.8916-9680.0.fasta -t /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68337.8916-9680.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68337.8916-9680.comp39100_c3_seq8.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/comp39100_c3_seq2.for.8916-9680.0.fasta -t /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68337.8916-9680.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68337.8916-9680.comp39100_c3_seq2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/comp39100_c3_seq3.for.8916-9680.0.fasta -t /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68337.8916-9680.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68337.8916-9680.comp39100_c3_seq3.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:6 now processing 0 total clusters:6 now processing 0 ...processing 0 of 7 ...processing 1 of 7 ...processing 2 of 7 ...processing 3 of 7 ...processing 4 of 7 ...processing 5 of 7 ...processing 6 of 7 total clusters:6 now processing 0 total clusters:6 now processing 0 total clusters:6 now processing 0 total clusters:6 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68337.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/54/74/Contig68337//theVoid.Contig68337/0/Contig68337.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68337.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/54/74/Contig68337//theVoid.Contig68337/0/Contig68337.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68337.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/54/74/Contig68337//theVoid.Contig68337/0/Contig68337.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68337.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/54/74/Contig68337//theVoid.Contig68337/0/Contig68337.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68337.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/54/74/Contig68337//theVoid.Contig68337/0/Contig68337.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68337.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/54/74/Contig68337//theVoid.Contig68337/0/Contig68337.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68337.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/54/74/Contig68337//theVoid.Contig68337/0/Contig68337.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68337.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/54/74/Contig68337//theVoid.Contig68337/0/Contig68337.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68337.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/54/74/Contig68337//theVoid.Contig68337/0/Contig68337.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68337.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/54/74/Contig68337//theVoid.Contig68337/0/Contig68337.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig68338 Length: 4908 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/F7/2A/Contig68338//theVoid.Contig68338/0/Contig68338.0.all.rb -species all -dir /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/F7/2A/Contig68338//theVoid.Contig68338/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68338.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/F7/2A/Contig68338//theVoid.Contig68338/0/Contig68338.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:7 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68338.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/F7/2A/Contig68338//theVoid.Contig68338/0/Contig68338.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68338.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/F7/2A/Contig68338//theVoid.Contig68338/0/Contig68338.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68338.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/F7/2A/Contig68338//theVoid.Contig68338/0/Contig68338.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68338.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/F7/2A/Contig68338//theVoid.Contig68338/0/Contig68338.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68338.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/F7/2A/Contig68338//theVoid.Contig68338/0/Contig68338.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68338.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/F7/2A/Contig68338//theVoid.Contig68338/0/Contig68338.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68338.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/F7/2A/Contig68338//theVoid.Contig68338/0/Contig68338.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68338.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/F7/2A/Contig68338//theVoid.Contig68338/0/Contig68338.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68338.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/F7/2A/Contig68338//theVoid.Contig68338/0/Contig68338.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:5 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/comp42663_c4_seq8.for.1134-2309.0.fasta -t /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68338.1134-2309.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68338.1134-2309.comp42663_c4_seq8.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/comp42663_c4_seq2.for.1134-2309.0.fasta -t /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68338.1134-2309.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68338.1134-2309.comp42663_c4_seq2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/comp42663_c4_seq5.for.1134-2309.0.fasta -t /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68338.1134-2309.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68338.1134-2309.comp42663_c4_seq5.e.exonerate #-------------------------------# cleaning blastn... flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68338.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/F7/2A/Contig68338//theVoid.Contig68338/0/Contig68338.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68338.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/F7/2A/Contig68338//theVoid.Contig68338/0/Contig68338.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68338.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/F7/2A/Contig68338//theVoid.Contig68338/0/Contig68338.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68338.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/F7/2A/Contig68338//theVoid.Contig68338/0/Contig68338.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68338.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/F7/2A/Contig68338//theVoid.Contig68338/0/Contig68338.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68338.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/F7/2A/Contig68338//theVoid.Contig68338/0/Contig68338.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68338.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/F7/2A/Contig68338//theVoid.Contig68338/0/Contig68338.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68338.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/F7/2A/Contig68338//theVoid.Contig68338/0/Contig68338.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68338.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/F7/2A/Contig68338//theVoid.Contig68338/0/Contig68338.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68338.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/F7/2A/Contig68338//theVoid.Contig68338/0/Contig68338.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig68339 Length: 15469 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/92/59/Contig68339//theVoid.Contig68339/0/Contig68339.0.all.rb -species all -dir /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/92/59/Contig68339//theVoid.Contig68339/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68339.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/92/59/Contig68339//theVoid.Contig68339/0/Contig68339.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68339.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/92/59/Contig68339//theVoid.Contig68339/0/Contig68339.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68339.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/92/59/Contig68339//theVoid.Contig68339/0/Contig68339.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68339.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/92/59/Contig68339//theVoid.Contig68339/0/Contig68339.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68339.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/92/59/Contig68339//theVoid.Contig68339/0/Contig68339.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68339.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/92/59/Contig68339//theVoid.Contig68339/0/Contig68339.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68339.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/92/59/Contig68339//theVoid.Contig68339/0/Contig68339.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68339.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/92/59/Contig68339//theVoid.Contig68339/0/Contig68339.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68339.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/92/59/Contig68339//theVoid.Contig68339/0/Contig68339.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68339.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/92/59/Contig68339//theVoid.Contig68339/0/Contig68339.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/comp24241_c3_seq1.for.3820-4840.0.fasta -t /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68339.3820-4840.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68339.3820-4840.comp24241_c3_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/comp37904_c7_seq5.for.9404-10327.0.fasta -t /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68339.9404-10327.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68339.9404-10327.comp37904_c7_seq5.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/comp37904_c4_seq1.for.9207-11599.0.fasta -t /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68339.9207-11599.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68339.9207-11599.comp37904_c4_seq1.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:2 now processing 0 total clusters:2 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68339.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/92/59/Contig68339//theVoid.Contig68339/0/Contig68339.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68339.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/92/59/Contig68339//theVoid.Contig68339/0/Contig68339.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68339.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/92/59/Contig68339//theVoid.Contig68339/0/Contig68339.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68339.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/92/59/Contig68339//theVoid.Contig68339/0/Contig68339.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:3 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68339.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/92/59/Contig68339//theVoid.Contig68339/0/Contig68339.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68339.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/92/59/Contig68339//theVoid.Contig68339/0/Contig68339.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68339.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/92/59/Contig68339//theVoid.Contig68339/0/Contig68339.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68339.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/92/59/Contig68339//theVoid.Contig68339/0/Contig68339.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68339.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/92/59/Contig68339//theVoid.Contig68339/0/Contig68339.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68339.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/92/59/Contig68339//theVoid.Contig68339/0/Contig68339.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:1 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/EKC21780%2E1.for.14070-15469.0.fasta -t /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68339.14070-15469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68339.14070-15469.EKC21780%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/XP_022320625%2E1.for.14070-15469.0.fasta -t /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68339.14070-15469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68339.14070-15469.XP_022320625%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/XP_022322080%2E1.for.14070-15469.0.fasta -t /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68339.14070-15469.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68339.14070-15469.XP_022322080%2E1.p.exonerate #-------------------------------# cleaning blastx... flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig68340 Length: 8845 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/00/68/Contig68340//theVoid.Contig68340/0/Contig68340.0.all.rb -species all -dir /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/00/68/Contig68340//theVoid.Contig68340/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68340.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/00/68/Contig68340//theVoid.Contig68340/0/Contig68340.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68340.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/00/68/Contig68340//theVoid.Contig68340/0/Contig68340.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68340.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/00/68/Contig68340//theVoid.Contig68340/0/Contig68340.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68340.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/00/68/Contig68340//theVoid.Contig68340/0/Contig68340.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68340.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/00/68/Contig68340//theVoid.Contig68340/0/Contig68340.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68340.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/00/68/Contig68340//theVoid.Contig68340/0/Contig68340.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68340.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/00/68/Contig68340//theVoid.Contig68340/0/Contig68340.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68340.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/00/68/Contig68340//theVoid.Contig68340/0/Contig68340.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:8 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68340.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/00/68/Contig68340//theVoid.Contig68340/0/Contig68340.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68340.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/00/68/Contig68340//theVoid.Contig68340/0/Contig68340.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:7 hits collecting blastn reports polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/comp34925_c6_seq1.for.1-889.0.fasta -t /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68340.1-889.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68340.1-889.comp34925_c6_seq1.e.exonerate #-------------------------------# cleaning blastn... cleaning clusters.... total clusters:1 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68340.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/00/68/Contig68340//theVoid.Contig68340/0/Contig68340.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68340.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/00/68/Contig68340//theVoid.Contig68340/0/Contig68340.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68340.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/00/68/Contig68340//theVoid.Contig68340/0/Contig68340.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68340.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/00/68/Contig68340//theVoid.Contig68340/0/Contig68340.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68340.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/00/68/Contig68340//theVoid.Contig68340/0/Contig68340.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68340.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/00/68/Contig68340//theVoid.Contig68340/0/Contig68340.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68340.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/00/68/Contig68340//theVoid.Contig68340/0/Contig68340.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68340.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/00/68/Contig68340//theVoid.Contig68340/0/Contig68340.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68340.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/00/68/Contig68340//theVoid.Contig68340/0/Contig68340.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68340.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/00/68/Contig68340//theVoid.Contig68340/0/Contig68340.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:1 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig68341 Length: 14662 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/09/9F/Contig68341//theVoid.Contig68341/0/Contig68341.0.all.rb -species all -dir /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/09/9F/Contig68341//theVoid.Contig68341/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68341.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/09/9F/Contig68341//theVoid.Contig68341/0/Contig68341.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68341.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/09/9F/Contig68341//theVoid.Contig68341/0/Contig68341.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68341.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/09/9F/Contig68341//theVoid.Contig68341/0/Contig68341.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68341.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/09/9F/Contig68341//theVoid.Contig68341/0/Contig68341.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68341.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/09/9F/Contig68341//theVoid.Contig68341/0/Contig68341.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68341.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/09/9F/Contig68341//theVoid.Contig68341/0/Contig68341.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68341.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/09/9F/Contig68341//theVoid.Contig68341/0/Contig68341.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68341.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/09/9F/Contig68341//theVoid.Contig68341/0/Contig68341.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68341.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/09/9F/Contig68341//theVoid.Contig68341/0/Contig68341.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68341.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/09/9F/Contig68341//theVoid.Contig68341/0/Contig68341.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/comp36112_c1_seq2.for.1297-2262.0.fasta -t /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68341.1297-2262.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68341.1297-2262.comp36112_c1_seq2.e.exonerate #-------------------------------# cleaning blastn... cleaning clusters.... total clusters:1 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68341.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/09/9F/Contig68341//theVoid.Contig68341/0/Contig68341.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68341.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/09/9F/Contig68341//theVoid.Contig68341/0/Contig68341.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68341.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/09/9F/Contig68341//theVoid.Contig68341/0/Contig68341.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68341.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/09/9F/Contig68341//theVoid.Contig68341/0/Contig68341.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68341.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/09/9F/Contig68341//theVoid.Contig68341/0/Contig68341.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68341.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/09/9F/Contig68341//theVoid.Contig68341/0/Contig68341.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68341.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/09/9F/Contig68341//theVoid.Contig68341/0/Contig68341.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68341.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/09/9F/Contig68341//theVoid.Contig68341/0/Contig68341.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68341.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/09/9F/Contig68341//theVoid.Contig68341/0/Contig68341.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.39/cctools-temp-t.39.0Qhys0/maker_0plxuL/0/Contig68341.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.39/Olurida_v081.maker.output/Olurida_v081_datastore/09/9F/Contig68341//theVoid.Contig68341/0/Contig68341.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output Maker is now finished!!! Start_time: 1533652860 End_time: 1533653178 Elapsed: 318 ================================= Argument "2.53_01" isn't numeric in numeric ge (>=) at /usr/local/lib/x86_64-linux-gnu/perl/5.22.1/forks.pm line 1570. Unknown option: debug_size_limit STATUS: Parsing control files... STATUS: Processing and indexing input FASTA files... STATUS: Setting up database for any GFF3 input... A data structure will be created for you at: /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore To access files for individual sequences use the datastore index: /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_master_datastore_index.log STATUS: Now running MAKER... examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig12912 Length: 1982 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/DD/81/Contig12912//theVoid.Contig12912/0/Contig12912.0.all.rb -species all -dir /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/DD/81/Contig12912//theVoid.Contig12912/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12912.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/DD/81/Contig12912//theVoid.Contig12912/0/Contig12912.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12912.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/DD/81/Contig12912//theVoid.Contig12912/0/Contig12912.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12912.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/DD/81/Contig12912//theVoid.Contig12912/0/Contig12912.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12912.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/DD/81/Contig12912//theVoid.Contig12912/0/Contig12912.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12912.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/DD/81/Contig12912//theVoid.Contig12912/0/Contig12912.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12912.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/DD/81/Contig12912//theVoid.Contig12912/0/Contig12912.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12912.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/DD/81/Contig12912//theVoid.Contig12912/0/Contig12912.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12912.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/DD/81/Contig12912//theVoid.Contig12912/0/Contig12912.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12912.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/DD/81/Contig12912//theVoid.Contig12912/0/Contig12912.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12912.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/DD/81/Contig12912//theVoid.Contig12912/0/Contig12912.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports flattening EST clusters doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12912.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/DD/81/Contig12912//theVoid.Contig12912/0/Contig12912.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12912.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/DD/81/Contig12912//theVoid.Contig12912/0/Contig12912.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12912.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/DD/81/Contig12912//theVoid.Contig12912/0/Contig12912.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12912.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/DD/81/Contig12912//theVoid.Contig12912/0/Contig12912.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12912.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/DD/81/Contig12912//theVoid.Contig12912/0/Contig12912.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12912.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/DD/81/Contig12912//theVoid.Contig12912/0/Contig12912.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12912.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/DD/81/Contig12912//theVoid.Contig12912/0/Contig12912.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12912.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/DD/81/Contig12912//theVoid.Contig12912/0/Contig12912.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12912.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/DD/81/Contig12912//theVoid.Contig12912/0/Contig12912.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12912.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/DD/81/Contig12912//theVoid.Contig12912/0/Contig12912.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/EKC25778%2E1.for.167-1101.0.fasta -t /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12912.167-1101.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12912.167-1101.EKC25778%2E1.p.exonerate #-------------------------------# cleaning blastx... cleaning clusters.... total clusters:1 now processing 0 cleaning clusters.... total clusters:1 now processing 0 flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig12913 Length: 2517 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/01/5A/Contig12913//theVoid.Contig12913/0/Contig12913.0.all.rb -species all -dir /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/01/5A/Contig12913//theVoid.Contig12913/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12913.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/01/5A/Contig12913//theVoid.Contig12913/0/Contig12913.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12913.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/01/5A/Contig12913//theVoid.Contig12913/0/Contig12913.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12913.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/01/5A/Contig12913//theVoid.Contig12913/0/Contig12913.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12913.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/01/5A/Contig12913//theVoid.Contig12913/0/Contig12913.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12913.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/01/5A/Contig12913//theVoid.Contig12913/0/Contig12913.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12913.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/01/5A/Contig12913//theVoid.Contig12913/0/Contig12913.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12913.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/01/5A/Contig12913//theVoid.Contig12913/0/Contig12913.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12913.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/01/5A/Contig12913//theVoid.Contig12913/0/Contig12913.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12913.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/01/5A/Contig12913//theVoid.Contig12913/0/Contig12913.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12913.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/01/5A/Contig12913//theVoid.Contig12913/0/Contig12913.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/comp33799_c0_seq1.for.1520-2517.0.fasta -t /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12913.1520-2517.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12913.1520-2517.comp33799_c0_seq1.e.exonerate #-------------------------------# cleaning blastn... cleaning clusters.... total clusters:1 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12913.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/01/5A/Contig12913//theVoid.Contig12913/0/Contig12913.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12913.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/01/5A/Contig12913//theVoid.Contig12913/0/Contig12913.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12913.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/01/5A/Contig12913//theVoid.Contig12913/0/Contig12913.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12913.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/01/5A/Contig12913//theVoid.Contig12913/0/Contig12913.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12913.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/01/5A/Contig12913//theVoid.Contig12913/0/Contig12913.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12913.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/01/5A/Contig12913//theVoid.Contig12913/0/Contig12913.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12913.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/01/5A/Contig12913//theVoid.Contig12913/0/Contig12913.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12913.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/01/5A/Contig12913//theVoid.Contig12913/0/Contig12913.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12913.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/01/5A/Contig12913//theVoid.Contig12913/0/Contig12913.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12913.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/01/5A/Contig12913//theVoid.Contig12913/0/Contig12913.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/XP_022313064%2E1.for.1982-2517.0.fasta -t /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12913.1982-2517.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12913.1982-2517.XP_022313064%2E1.p.exonerate #-------------------------------# cleaning blastx... flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig12925 Length: 1298 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/EB/B8/Contig12925//theVoid.Contig12925/0/Contig12925.0.all.rb -species all -dir /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/EB/B8/Contig12925//theVoid.Contig12925/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12925.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/EB/B8/Contig12925//theVoid.Contig12925/0/Contig12925.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12925.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/EB/B8/Contig12925//theVoid.Contig12925/0/Contig12925.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12925.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/EB/B8/Contig12925//theVoid.Contig12925/0/Contig12925.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12925.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/EB/B8/Contig12925//theVoid.Contig12925/0/Contig12925.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12925.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/EB/B8/Contig12925//theVoid.Contig12925/0/Contig12925.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12925.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/EB/B8/Contig12925//theVoid.Contig12925/0/Contig12925.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12925.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/EB/B8/Contig12925//theVoid.Contig12925/0/Contig12925.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12925.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/EB/B8/Contig12925//theVoid.Contig12925/0/Contig12925.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12925.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/EB/B8/Contig12925//theVoid.Contig12925/0/Contig12925.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12925.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/EB/B8/Contig12925//theVoid.Contig12925/0/Contig12925.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/comp40178_c1_seq14.for.199-1123.0.fasta -t /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12925.199-1123.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12925.199-1123.comp40178_c1_seq14.e.exonerate #-------------------------------# cleaning blastn... cleaning clusters.... total clusters:1 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12925.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/EB/B8/Contig12925//theVoid.Contig12925/0/Contig12925.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12925.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/EB/B8/Contig12925//theVoid.Contig12925/0/Contig12925.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12925.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/EB/B8/Contig12925//theVoid.Contig12925/0/Contig12925.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12925.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/EB/B8/Contig12925//theVoid.Contig12925/0/Contig12925.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12925.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/EB/B8/Contig12925//theVoid.Contig12925/0/Contig12925.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12925.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/EB/B8/Contig12925//theVoid.Contig12925/0/Contig12925.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12925.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/EB/B8/Contig12925//theVoid.Contig12925/0/Contig12925.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12925.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/EB/B8/Contig12925//theVoid.Contig12925/0/Contig12925.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12925.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/EB/B8/Contig12925//theVoid.Contig12925/0/Contig12925.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12925.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/EB/B8/Contig12925//theVoid.Contig12925/0/Contig12925.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig12927 Length: 1552 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/5F/77/Contig12927//theVoid.Contig12927/0/Contig12927.0.all.rb -species all -dir /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/5F/77/Contig12927//theVoid.Contig12927/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12927.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/5F/77/Contig12927//theVoid.Contig12927/0/Contig12927.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12927.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/5F/77/Contig12927//theVoid.Contig12927/0/Contig12927.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12927.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/5F/77/Contig12927//theVoid.Contig12927/0/Contig12927.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12927.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/5F/77/Contig12927//theVoid.Contig12927/0/Contig12927.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12927.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/5F/77/Contig12927//theVoid.Contig12927/0/Contig12927.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12927.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/5F/77/Contig12927//theVoid.Contig12927/0/Contig12927.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12927.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/5F/77/Contig12927//theVoid.Contig12927/0/Contig12927.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12927.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/5F/77/Contig12927//theVoid.Contig12927/0/Contig12927.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12927.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/5F/77/Contig12927//theVoid.Contig12927/0/Contig12927.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12927.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/5F/77/Contig12927//theVoid.Contig12927/0/Contig12927.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/comp37904_c4_seq1.for.661-1552.0.fasta -t /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12927.661-1552.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12927.661-1552.comp37904_c4_seq1.e.exonerate #-------------------------------# cleaning blastn... flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12927.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/5F/77/Contig12927//theVoid.Contig12927/0/Contig12927.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12927.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/5F/77/Contig12927//theVoid.Contig12927/0/Contig12927.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12927.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/5F/77/Contig12927//theVoid.Contig12927/0/Contig12927.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12927.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/5F/77/Contig12927//theVoid.Contig12927/0/Contig12927.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12927.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/5F/77/Contig12927//theVoid.Contig12927/0/Contig12927.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12927.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/5F/77/Contig12927//theVoid.Contig12927/0/Contig12927.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12927.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/5F/77/Contig12927//theVoid.Contig12927/0/Contig12927.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12927.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/5F/77/Contig12927//theVoid.Contig12927/0/Contig12927.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12927.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/5F/77/Contig12927//theVoid.Contig12927/0/Contig12927.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12927.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/5F/77/Contig12927//theVoid.Contig12927/0/Contig12927.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig12932 Length: 3780 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/2C/00/Contig12932//theVoid.Contig12932/0/Contig12932.0.all.rb -species all -dir /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/2C/00/Contig12932//theVoid.Contig12932/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12932.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/2C/00/Contig12932//theVoid.Contig12932/0/Contig12932.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12932.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/2C/00/Contig12932//theVoid.Contig12932/0/Contig12932.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12932.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/2C/00/Contig12932//theVoid.Contig12932/0/Contig12932.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12932.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/2C/00/Contig12932//theVoid.Contig12932/0/Contig12932.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12932.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/2C/00/Contig12932//theVoid.Contig12932/0/Contig12932.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12932.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/2C/00/Contig12932//theVoid.Contig12932/0/Contig12932.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12932.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/2C/00/Contig12932//theVoid.Contig12932/0/Contig12932.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12932.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/2C/00/Contig12932//theVoid.Contig12932/0/Contig12932.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12932.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/2C/00/Contig12932//theVoid.Contig12932/0/Contig12932.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12932.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/2C/00/Contig12932//theVoid.Contig12932/0/Contig12932.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12932.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/2C/00/Contig12932//theVoid.Contig12932/0/Contig12932.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12932.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/2C/00/Contig12932//theVoid.Contig12932/0/Contig12932.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12932.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/2C/00/Contig12932//theVoid.Contig12932/0/Contig12932.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12932.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/2C/00/Contig12932//theVoid.Contig12932/0/Contig12932.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12932.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/2C/00/Contig12932//theVoid.Contig12932/0/Contig12932.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12932.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/2C/00/Contig12932//theVoid.Contig12932/0/Contig12932.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12932.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/2C/00/Contig12932//theVoid.Contig12932/0/Contig12932.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12932.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/2C/00/Contig12932//theVoid.Contig12932/0/Contig12932.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12932.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/2C/00/Contig12932//theVoid.Contig12932/0/Contig12932.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12932.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/2C/00/Contig12932//theVoid.Contig12932/0/Contig12932.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig12934 Length: 5173 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/3F/2E/Contig12934//theVoid.Contig12934/0/Contig12934.0.all.rb -species all -dir /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/3F/2E/Contig12934//theVoid.Contig12934/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12934.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/3F/2E/Contig12934//theVoid.Contig12934/0/Contig12934.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12934.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/3F/2E/Contig12934//theVoid.Contig12934/0/Contig12934.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12934.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/3F/2E/Contig12934//theVoid.Contig12934/0/Contig12934.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12934.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/3F/2E/Contig12934//theVoid.Contig12934/0/Contig12934.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12934.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/3F/2E/Contig12934//theVoid.Contig12934/0/Contig12934.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12934.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/3F/2E/Contig12934//theVoid.Contig12934/0/Contig12934.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12934.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/3F/2E/Contig12934//theVoid.Contig12934/0/Contig12934.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12934.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/3F/2E/Contig12934//theVoid.Contig12934/0/Contig12934.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12934.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/3F/2E/Contig12934//theVoid.Contig12934/0/Contig12934.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12934.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/3F/2E/Contig12934//theVoid.Contig12934/0/Contig12934.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12934.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/3F/2E/Contig12934//theVoid.Contig12934/0/Contig12934.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12934.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/3F/2E/Contig12934//theVoid.Contig12934/0/Contig12934.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12934.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/3F/2E/Contig12934//theVoid.Contig12934/0/Contig12934.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12934.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/3F/2E/Contig12934//theVoid.Contig12934/0/Contig12934.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12934.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/3F/2E/Contig12934//theVoid.Contig12934/0/Contig12934.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12934.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/3F/2E/Contig12934//theVoid.Contig12934/0/Contig12934.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12934.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/3F/2E/Contig12934//theVoid.Contig12934/0/Contig12934.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12934.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/3F/2E/Contig12934//theVoid.Contig12934/0/Contig12934.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12934.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/3F/2E/Contig12934//theVoid.Contig12934/0/Contig12934.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12934.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/3F/2E/Contig12934//theVoid.Contig12934/0/Contig12934.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig12942 Length: 2908 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/EA/1B/Contig12942//theVoid.Contig12942/0/Contig12942.0.all.rb -species all -dir /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/EA/1B/Contig12942//theVoid.Contig12942/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12942.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/EA/1B/Contig12942//theVoid.Contig12942/0/Contig12942.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12942.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/EA/1B/Contig12942//theVoid.Contig12942/0/Contig12942.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12942.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/EA/1B/Contig12942//theVoid.Contig12942/0/Contig12942.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12942.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/EA/1B/Contig12942//theVoid.Contig12942/0/Contig12942.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12942.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/EA/1B/Contig12942//theVoid.Contig12942/0/Contig12942.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12942.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/EA/1B/Contig12942//theVoid.Contig12942/0/Contig12942.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12942.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/EA/1B/Contig12942//theVoid.Contig12942/0/Contig12942.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12942.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/EA/1B/Contig12942//theVoid.Contig12942/0/Contig12942.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12942.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/EA/1B/Contig12942//theVoid.Contig12942/0/Contig12942.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12942.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/EA/1B/Contig12942//theVoid.Contig12942/0/Contig12942.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12942.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/EA/1B/Contig12942//theVoid.Contig12942/0/Contig12942.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12942.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/EA/1B/Contig12942//theVoid.Contig12942/0/Contig12942.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12942.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/EA/1B/Contig12942//theVoid.Contig12942/0/Contig12942.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12942.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/EA/1B/Contig12942//theVoid.Contig12942/0/Contig12942.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12942.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/EA/1B/Contig12942//theVoid.Contig12942/0/Contig12942.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12942.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/EA/1B/Contig12942//theVoid.Contig12942/0/Contig12942.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12942.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/EA/1B/Contig12942//theVoid.Contig12942/0/Contig12942.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12942.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/EA/1B/Contig12942//theVoid.Contig12942/0/Contig12942.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12942.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/EA/1B/Contig12942//theVoid.Contig12942/0/Contig12942.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12942.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/EA/1B/Contig12942//theVoid.Contig12942/0/Contig12942.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig12949 Length: 3304 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/B8/9B/Contig12949//theVoid.Contig12949/0/Contig12949.0.all.rb -species all -dir /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/B8/9B/Contig12949//theVoid.Contig12949/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12949.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/B8/9B/Contig12949//theVoid.Contig12949/0/Contig12949.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12949.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/B8/9B/Contig12949//theVoid.Contig12949/0/Contig12949.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12949.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/B8/9B/Contig12949//theVoid.Contig12949/0/Contig12949.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12949.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/B8/9B/Contig12949//theVoid.Contig12949/0/Contig12949.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12949.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/B8/9B/Contig12949//theVoid.Contig12949/0/Contig12949.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12949.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/B8/9B/Contig12949//theVoid.Contig12949/0/Contig12949.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12949.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/B8/9B/Contig12949//theVoid.Contig12949/0/Contig12949.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12949.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/B8/9B/Contig12949//theVoid.Contig12949/0/Contig12949.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12949.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/B8/9B/Contig12949//theVoid.Contig12949/0/Contig12949.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12949.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/B8/9B/Contig12949//theVoid.Contig12949/0/Contig12949.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:3 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12949.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/B8/9B/Contig12949//theVoid.Contig12949/0/Contig12949.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12949.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/B8/9B/Contig12949//theVoid.Contig12949/0/Contig12949.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12949.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/B8/9B/Contig12949//theVoid.Contig12949/0/Contig12949.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12949.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/B8/9B/Contig12949//theVoid.Contig12949/0/Contig12949.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12949.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/B8/9B/Contig12949//theVoid.Contig12949/0/Contig12949.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12949.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/B8/9B/Contig12949//theVoid.Contig12949/0/Contig12949.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12949.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/B8/9B/Contig12949//theVoid.Contig12949/0/Contig12949.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12949.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/B8/9B/Contig12949//theVoid.Contig12949/0/Contig12949.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12949.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/B8/9B/Contig12949//theVoid.Contig12949/0/Contig12949.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12949.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/B8/9B/Contig12949//theVoid.Contig12949/0/Contig12949.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig12952 Length: 1828 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/E1/6C/Contig12952//theVoid.Contig12952/0/Contig12952.0.all.rb -species all -dir /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/E1/6C/Contig12952//theVoid.Contig12952/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12952.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/E1/6C/Contig12952//theVoid.Contig12952/0/Contig12952.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12952.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/E1/6C/Contig12952//theVoid.Contig12952/0/Contig12952.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12952.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/E1/6C/Contig12952//theVoid.Contig12952/0/Contig12952.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12952.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/E1/6C/Contig12952//theVoid.Contig12952/0/Contig12952.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12952.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/E1/6C/Contig12952//theVoid.Contig12952/0/Contig12952.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12952.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/E1/6C/Contig12952//theVoid.Contig12952/0/Contig12952.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12952.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/E1/6C/Contig12952//theVoid.Contig12952/0/Contig12952.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12952.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/E1/6C/Contig12952//theVoid.Contig12952/0/Contig12952.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12952.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/E1/6C/Contig12952//theVoid.Contig12952/0/Contig12952.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12952.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/E1/6C/Contig12952//theVoid.Contig12952/0/Contig12952.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/comp36374_c2_seq11.for.806-1828.0.fasta -t /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12952.806-1828.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12952.806-1828.comp36374_c2_seq11.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/comp36374_c2_seq15.for.789-1828.0.fasta -t /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12952.789-1828.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12952.789-1828.comp36374_c2_seq15.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:1 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12952.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/E1/6C/Contig12952//theVoid.Contig12952/0/Contig12952.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12952.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/E1/6C/Contig12952//theVoid.Contig12952/0/Contig12952.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12952.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/E1/6C/Contig12952//theVoid.Contig12952/0/Contig12952.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12952.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/E1/6C/Contig12952//theVoid.Contig12952/0/Contig12952.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12952.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/E1/6C/Contig12952//theVoid.Contig12952/0/Contig12952.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12952.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/E1/6C/Contig12952//theVoid.Contig12952/0/Contig12952.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12952.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/E1/6C/Contig12952//theVoid.Contig12952/0/Contig12952.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12952.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/E1/6C/Contig12952//theVoid.Contig12952/0/Contig12952.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12952.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/E1/6C/Contig12952//theVoid.Contig12952/0/Contig12952.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12952.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/E1/6C/Contig12952//theVoid.Contig12952/0/Contig12952.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig12957 Length: 1555 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/1A/12/Contig12957//theVoid.Contig12957/0/Contig12957.0.all.rb -species all -dir /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/1A/12/Contig12957//theVoid.Contig12957/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12957.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/1A/12/Contig12957//theVoid.Contig12957/0/Contig12957.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12957.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/1A/12/Contig12957//theVoid.Contig12957/0/Contig12957.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12957.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/1A/12/Contig12957//theVoid.Contig12957/0/Contig12957.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12957.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/1A/12/Contig12957//theVoid.Contig12957/0/Contig12957.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12957.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/1A/12/Contig12957//theVoid.Contig12957/0/Contig12957.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12957.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/1A/12/Contig12957//theVoid.Contig12957/0/Contig12957.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12957.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/1A/12/Contig12957//theVoid.Contig12957/0/Contig12957.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12957.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/1A/12/Contig12957//theVoid.Contig12957/0/Contig12957.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12957.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/1A/12/Contig12957//theVoid.Contig12957/0/Contig12957.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12957.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/1A/12/Contig12957//theVoid.Contig12957/0/Contig12957.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12957.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/1A/12/Contig12957//theVoid.Contig12957/0/Contig12957.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12957.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/1A/12/Contig12957//theVoid.Contig12957/0/Contig12957.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12957.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/1A/12/Contig12957//theVoid.Contig12957/0/Contig12957.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12957.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/1A/12/Contig12957//theVoid.Contig12957/0/Contig12957.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12957.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/1A/12/Contig12957//theVoid.Contig12957/0/Contig12957.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12957.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/1A/12/Contig12957//theVoid.Contig12957/0/Contig12957.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12957.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/1A/12/Contig12957//theVoid.Contig12957/0/Contig12957.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12957.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/1A/12/Contig12957//theVoid.Contig12957/0/Contig12957.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12957.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/1A/12/Contig12957//theVoid.Contig12957/0/Contig12957.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.46/cctools-temp-t.46.S9b092/maker_QwASLr/0/Contig12957.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.46/Olurida_v081.maker.output/Olurida_v081_datastore/1A/12/Contig12957//theVoid.Contig12957/0/Contig12957.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output Maker is now finished!!! Start_time: 1533652886 End_time: 1533653188 Elapsed: 302 ================================= Argument "2.53_01" isn't numeric in numeric ge (>=) at /usr/local/lib/x86_64-linux-gnu/perl/5.22.1/forks.pm line 1570. Unknown option: debug_size_limit STATUS: Parsing control files... STATUS: Processing and indexing input FASTA files... STATUS: Setting up database for any GFF3 input... A data structure will be created for you at: /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore To access files for individual sequences use the datastore index: /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_master_datastore_index.log STATUS: Now running MAKER... examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig131793 Length: 1468 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/CD/32/Contig131793//theVoid.Contig131793/0/Contig131793.0.all.rb -species all -dir /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/CD/32/Contig131793//theVoid.Contig131793/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131793.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/CD/32/Contig131793//theVoid.Contig131793/0/Contig131793.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131793.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/CD/32/Contig131793//theVoid.Contig131793/0/Contig131793.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131793.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/CD/32/Contig131793//theVoid.Contig131793/0/Contig131793.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131793.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/CD/32/Contig131793//theVoid.Contig131793/0/Contig131793.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131793.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/CD/32/Contig131793//theVoid.Contig131793/0/Contig131793.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131793.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/CD/32/Contig131793//theVoid.Contig131793/0/Contig131793.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131793.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/CD/32/Contig131793//theVoid.Contig131793/0/Contig131793.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131793.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/CD/32/Contig131793//theVoid.Contig131793/0/Contig131793.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131793.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/CD/32/Contig131793//theVoid.Contig131793/0/Contig131793.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131793.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/CD/32/Contig131793//theVoid.Contig131793/0/Contig131793.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131793.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/CD/32/Contig131793//theVoid.Contig131793/0/Contig131793.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131793.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/CD/32/Contig131793//theVoid.Contig131793/0/Contig131793.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131793.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/CD/32/Contig131793//theVoid.Contig131793/0/Contig131793.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131793.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/CD/32/Contig131793//theVoid.Contig131793/0/Contig131793.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131793.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/CD/32/Contig131793//theVoid.Contig131793/0/Contig131793.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131793.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/CD/32/Contig131793//theVoid.Contig131793/0/Contig131793.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131793.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/CD/32/Contig131793//theVoid.Contig131793/0/Contig131793.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131793.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/CD/32/Contig131793//theVoid.Contig131793/0/Contig131793.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131793.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/CD/32/Contig131793//theVoid.Contig131793/0/Contig131793.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131793.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/CD/32/Contig131793//theVoid.Contig131793/0/Contig131793.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig131795 Length: 1612 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/84/88/Contig131795//theVoid.Contig131795/0/Contig131795.0.all.rb -species all -dir /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/84/88/Contig131795//theVoid.Contig131795/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131795.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/84/88/Contig131795//theVoid.Contig131795/0/Contig131795.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131795.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/84/88/Contig131795//theVoid.Contig131795/0/Contig131795.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131795.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/84/88/Contig131795//theVoid.Contig131795/0/Contig131795.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131795.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/84/88/Contig131795//theVoid.Contig131795/0/Contig131795.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131795.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/84/88/Contig131795//theVoid.Contig131795/0/Contig131795.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131795.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/84/88/Contig131795//theVoid.Contig131795/0/Contig131795.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131795.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/84/88/Contig131795//theVoid.Contig131795/0/Contig131795.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131795.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/84/88/Contig131795//theVoid.Contig131795/0/Contig131795.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131795.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/84/88/Contig131795//theVoid.Contig131795/0/Contig131795.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131795.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/84/88/Contig131795//theVoid.Contig131795/0/Contig131795.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131795.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/84/88/Contig131795//theVoid.Contig131795/0/Contig131795.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131795.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/84/88/Contig131795//theVoid.Contig131795/0/Contig131795.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131795.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/84/88/Contig131795//theVoid.Contig131795/0/Contig131795.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131795.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/84/88/Contig131795//theVoid.Contig131795/0/Contig131795.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131795.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/84/88/Contig131795//theVoid.Contig131795/0/Contig131795.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131795.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/84/88/Contig131795//theVoid.Contig131795/0/Contig131795.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131795.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/84/88/Contig131795//theVoid.Contig131795/0/Contig131795.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131795.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/84/88/Contig131795//theVoid.Contig131795/0/Contig131795.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131795.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/84/88/Contig131795//theVoid.Contig131795/0/Contig131795.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131795.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/84/88/Contig131795//theVoid.Contig131795/0/Contig131795.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig131796 Length: 2916 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/42/0D/Contig131796//theVoid.Contig131796/0/Contig131796.0.all.rb -species all -dir /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/42/0D/Contig131796//theVoid.Contig131796/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131796.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/42/0D/Contig131796//theVoid.Contig131796/0/Contig131796.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131796.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/42/0D/Contig131796//theVoid.Contig131796/0/Contig131796.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131796.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/42/0D/Contig131796//theVoid.Contig131796/0/Contig131796.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131796.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/42/0D/Contig131796//theVoid.Contig131796/0/Contig131796.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131796.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/42/0D/Contig131796//theVoid.Contig131796/0/Contig131796.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131796.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/42/0D/Contig131796//theVoid.Contig131796/0/Contig131796.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131796.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/42/0D/Contig131796//theVoid.Contig131796/0/Contig131796.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131796.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/42/0D/Contig131796//theVoid.Contig131796/0/Contig131796.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131796.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/42/0D/Contig131796//theVoid.Contig131796/0/Contig131796.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:7 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131796.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/42/0D/Contig131796//theVoid.Contig131796/0/Contig131796.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:4 hits collecting blastn reports polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/comp37904_c7_seq5.for.1729-2654.0.fasta -t /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131796.1729-2654.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131796.1729-2654.comp37904_c7_seq5.e.exonerate #-------------------------------# cleaning blastn... cleaning clusters.... total clusters:1 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131796.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/42/0D/Contig131796//theVoid.Contig131796/0/Contig131796.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131796.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/42/0D/Contig131796//theVoid.Contig131796/0/Contig131796.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131796.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/42/0D/Contig131796//theVoid.Contig131796/0/Contig131796.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131796.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/42/0D/Contig131796//theVoid.Contig131796/0/Contig131796.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131796.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/42/0D/Contig131796//theVoid.Contig131796/0/Contig131796.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131796.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/42/0D/Contig131796//theVoid.Contig131796/0/Contig131796.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131796.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/42/0D/Contig131796//theVoid.Contig131796/0/Contig131796.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131796.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/42/0D/Contig131796//theVoid.Contig131796/0/Contig131796.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131796.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/42/0D/Contig131796//theVoid.Contig131796/0/Contig131796.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131796.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/42/0D/Contig131796//theVoid.Contig131796/0/Contig131796.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/XP_022321066%2E1.for.2179-2916.0.fasta -t /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131796.2179-2916.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131796.2179-2916.XP_022321066%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/XP_022321067%2E1.for.2179-2916.0.fasta -t /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131796.2179-2916.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131796.2179-2916.XP_022321067%2E1.p.exonerate #-------------------------------# cleaning blastx... flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig131797 Length: 2994 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/32/BE/Contig131797//theVoid.Contig131797/0/Contig131797.0.all.rb -species all -dir /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/32/BE/Contig131797//theVoid.Contig131797/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131797.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/32/BE/Contig131797//theVoid.Contig131797/0/Contig131797.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131797.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/32/BE/Contig131797//theVoid.Contig131797/0/Contig131797.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131797.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/32/BE/Contig131797//theVoid.Contig131797/0/Contig131797.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131797.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/32/BE/Contig131797//theVoid.Contig131797/0/Contig131797.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131797.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/32/BE/Contig131797//theVoid.Contig131797/0/Contig131797.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131797.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/32/BE/Contig131797//theVoid.Contig131797/0/Contig131797.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131797.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/32/BE/Contig131797//theVoid.Contig131797/0/Contig131797.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131797.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/32/BE/Contig131797//theVoid.Contig131797/0/Contig131797.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131797.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/32/BE/Contig131797//theVoid.Contig131797/0/Contig131797.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131797.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/32/BE/Contig131797//theVoid.Contig131797/0/Contig131797.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/comp37904_c7_seq5.for.157-1101.0.fasta -t /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131797.157-1101.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131797.157-1101.comp37904_c7_seq5.e.exonerate #-------------------------------# cleaning blastn... flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131797.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/32/BE/Contig131797//theVoid.Contig131797/0/Contig131797.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131797.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/32/BE/Contig131797//theVoid.Contig131797/0/Contig131797.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131797.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/32/BE/Contig131797//theVoid.Contig131797/0/Contig131797.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131797.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/32/BE/Contig131797//theVoid.Contig131797/0/Contig131797.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131797.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/32/BE/Contig131797//theVoid.Contig131797/0/Contig131797.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131797.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/32/BE/Contig131797//theVoid.Contig131797/0/Contig131797.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131797.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/32/BE/Contig131797//theVoid.Contig131797/0/Contig131797.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131797.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/32/BE/Contig131797//theVoid.Contig131797/0/Contig131797.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131797.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/32/BE/Contig131797//theVoid.Contig131797/0/Contig131797.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131797.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/32/BE/Contig131797//theVoid.Contig131797/0/Contig131797.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig131800 Length: 1078 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/88/97/Contig131800//theVoid.Contig131800/0/Contig131800.0.all.rb -species all -dir /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/88/97/Contig131800//theVoid.Contig131800/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131800.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/88/97/Contig131800//theVoid.Contig131800/0/Contig131800.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131800.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/88/97/Contig131800//theVoid.Contig131800/0/Contig131800.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131800.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/88/97/Contig131800//theVoid.Contig131800/0/Contig131800.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131800.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/88/97/Contig131800//theVoid.Contig131800/0/Contig131800.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131800.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/88/97/Contig131800//theVoid.Contig131800/0/Contig131800.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131800.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/88/97/Contig131800//theVoid.Contig131800/0/Contig131800.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131800.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/88/97/Contig131800//theVoid.Contig131800/0/Contig131800.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131800.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/88/97/Contig131800//theVoid.Contig131800/0/Contig131800.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131800.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/88/97/Contig131800//theVoid.Contig131800/0/Contig131800.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131800.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/88/97/Contig131800//theVoid.Contig131800/0/Contig131800.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131800.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/88/97/Contig131800//theVoid.Contig131800/0/Contig131800.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131800.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/88/97/Contig131800//theVoid.Contig131800/0/Contig131800.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131800.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/88/97/Contig131800//theVoid.Contig131800/0/Contig131800.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131800.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/88/97/Contig131800//theVoid.Contig131800/0/Contig131800.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131800.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/88/97/Contig131800//theVoid.Contig131800/0/Contig131800.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131800.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/88/97/Contig131800//theVoid.Contig131800/0/Contig131800.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131800.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/88/97/Contig131800//theVoid.Contig131800/0/Contig131800.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131800.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/88/97/Contig131800//theVoid.Contig131800/0/Contig131800.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131800.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/88/97/Contig131800//theVoid.Contig131800/0/Contig131800.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131800.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/88/97/Contig131800//theVoid.Contig131800/0/Contig131800.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig131802 Length: 1054 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/0E/B7/Contig131802//theVoid.Contig131802/0/Contig131802.0.all.rb -species all -dir /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/0E/B7/Contig131802//theVoid.Contig131802/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131802.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/0E/B7/Contig131802//theVoid.Contig131802/0/Contig131802.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131802.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/0E/B7/Contig131802//theVoid.Contig131802/0/Contig131802.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131802.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/0E/B7/Contig131802//theVoid.Contig131802/0/Contig131802.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131802.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/0E/B7/Contig131802//theVoid.Contig131802/0/Contig131802.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131802.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/0E/B7/Contig131802//theVoid.Contig131802/0/Contig131802.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131802.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/0E/B7/Contig131802//theVoid.Contig131802/0/Contig131802.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131802.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/0E/B7/Contig131802//theVoid.Contig131802/0/Contig131802.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131802.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/0E/B7/Contig131802//theVoid.Contig131802/0/Contig131802.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131802.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/0E/B7/Contig131802//theVoid.Contig131802/0/Contig131802.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131802.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/0E/B7/Contig131802//theVoid.Contig131802/0/Contig131802.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131802.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/0E/B7/Contig131802//theVoid.Contig131802/0/Contig131802.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131802.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/0E/B7/Contig131802//theVoid.Contig131802/0/Contig131802.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131802.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/0E/B7/Contig131802//theVoid.Contig131802/0/Contig131802.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131802.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/0E/B7/Contig131802//theVoid.Contig131802/0/Contig131802.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131802.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/0E/B7/Contig131802//theVoid.Contig131802/0/Contig131802.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131802.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/0E/B7/Contig131802//theVoid.Contig131802/0/Contig131802.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131802.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/0E/B7/Contig131802//theVoid.Contig131802/0/Contig131802.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131802.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/0E/B7/Contig131802//theVoid.Contig131802/0/Contig131802.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131802.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/0E/B7/Contig131802//theVoid.Contig131802/0/Contig131802.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131802.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/0E/B7/Contig131802//theVoid.Contig131802/0/Contig131802.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig131804 Length: 1458 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/D4/88/Contig131804//theVoid.Contig131804/0/Contig131804.0.all.rb -species all -dir /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/D4/88/Contig131804//theVoid.Contig131804/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131804.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/D4/88/Contig131804//theVoid.Contig131804/0/Contig131804.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131804.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/D4/88/Contig131804//theVoid.Contig131804/0/Contig131804.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131804.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/D4/88/Contig131804//theVoid.Contig131804/0/Contig131804.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131804.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/D4/88/Contig131804//theVoid.Contig131804/0/Contig131804.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131804.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/D4/88/Contig131804//theVoid.Contig131804/0/Contig131804.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131804.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/D4/88/Contig131804//theVoid.Contig131804/0/Contig131804.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131804.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/D4/88/Contig131804//theVoid.Contig131804/0/Contig131804.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131804.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/D4/88/Contig131804//theVoid.Contig131804/0/Contig131804.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131804.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/D4/88/Contig131804//theVoid.Contig131804/0/Contig131804.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131804.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/D4/88/Contig131804//theVoid.Contig131804/0/Contig131804.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131804.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/D4/88/Contig131804//theVoid.Contig131804/0/Contig131804.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131804.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/D4/88/Contig131804//theVoid.Contig131804/0/Contig131804.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131804.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/D4/88/Contig131804//theVoid.Contig131804/0/Contig131804.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131804.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/D4/88/Contig131804//theVoid.Contig131804/0/Contig131804.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131804.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/D4/88/Contig131804//theVoid.Contig131804/0/Contig131804.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131804.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/D4/88/Contig131804//theVoid.Contig131804/0/Contig131804.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131804.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/D4/88/Contig131804//theVoid.Contig131804/0/Contig131804.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131804.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/D4/88/Contig131804//theVoid.Contig131804/0/Contig131804.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131804.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/D4/88/Contig131804//theVoid.Contig131804/0/Contig131804.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131804.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/D4/88/Contig131804//theVoid.Contig131804/0/Contig131804.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig131805 Length: 1554 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/EC/8D/Contig131805//theVoid.Contig131805/0/Contig131805.0.all.rb -species all -dir /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/EC/8D/Contig131805//theVoid.Contig131805/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131805.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/EC/8D/Contig131805//theVoid.Contig131805/0/Contig131805.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131805.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/EC/8D/Contig131805//theVoid.Contig131805/0/Contig131805.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131805.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/EC/8D/Contig131805//theVoid.Contig131805/0/Contig131805.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131805.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/EC/8D/Contig131805//theVoid.Contig131805/0/Contig131805.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131805.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/EC/8D/Contig131805//theVoid.Contig131805/0/Contig131805.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131805.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/EC/8D/Contig131805//theVoid.Contig131805/0/Contig131805.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131805.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/EC/8D/Contig131805//theVoid.Contig131805/0/Contig131805.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131805.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/EC/8D/Contig131805//theVoid.Contig131805/0/Contig131805.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131805.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/EC/8D/Contig131805//theVoid.Contig131805/0/Contig131805.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131805.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/EC/8D/Contig131805//theVoid.Contig131805/0/Contig131805.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/comp41856_c2_seq2.for.1-931.0.fasta -t /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131805.1-931.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131805.1-931.comp41856_c2_seq2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/comp38820_c1_seq3.for.589-1554.0.fasta -t /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131805.589-1554.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131805.589-1554.comp38820_c1_seq3.e.exonerate #-------------------------------# cleaning blastn... cleaning clusters.... total clusters:1 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131805.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/EC/8D/Contig131805//theVoid.Contig131805/0/Contig131805.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131805.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/EC/8D/Contig131805//theVoid.Contig131805/0/Contig131805.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131805.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/EC/8D/Contig131805//theVoid.Contig131805/0/Contig131805.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131805.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/EC/8D/Contig131805//theVoid.Contig131805/0/Contig131805.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131805.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/EC/8D/Contig131805//theVoid.Contig131805/0/Contig131805.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131805.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/EC/8D/Contig131805//theVoid.Contig131805/0/Contig131805.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131805.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/EC/8D/Contig131805//theVoid.Contig131805/0/Contig131805.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131805.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/EC/8D/Contig131805//theVoid.Contig131805/0/Contig131805.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131805.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/EC/8D/Contig131805//theVoid.Contig131805/0/Contig131805.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131805.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/EC/8D/Contig131805//theVoid.Contig131805/0/Contig131805.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig131806 Length: 1442 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/41/4A/Contig131806//theVoid.Contig131806/0/Contig131806.0.all.rb -species all -dir /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/41/4A/Contig131806//theVoid.Contig131806/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131806.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/41/4A/Contig131806//theVoid.Contig131806/0/Contig131806.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131806.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/41/4A/Contig131806//theVoid.Contig131806/0/Contig131806.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131806.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/41/4A/Contig131806//theVoid.Contig131806/0/Contig131806.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131806.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/41/4A/Contig131806//theVoid.Contig131806/0/Contig131806.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131806.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/41/4A/Contig131806//theVoid.Contig131806/0/Contig131806.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131806.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/41/4A/Contig131806//theVoid.Contig131806/0/Contig131806.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131806.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/41/4A/Contig131806//theVoid.Contig131806/0/Contig131806.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131806.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/41/4A/Contig131806//theVoid.Contig131806/0/Contig131806.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131806.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/41/4A/Contig131806//theVoid.Contig131806/0/Contig131806.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131806.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/41/4A/Contig131806//theVoid.Contig131806/0/Contig131806.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131806.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/41/4A/Contig131806//theVoid.Contig131806/0/Contig131806.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131806.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/41/4A/Contig131806//theVoid.Contig131806/0/Contig131806.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131806.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/41/4A/Contig131806//theVoid.Contig131806/0/Contig131806.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131806.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/41/4A/Contig131806//theVoid.Contig131806/0/Contig131806.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131806.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/41/4A/Contig131806//theVoid.Contig131806/0/Contig131806.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131806.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/41/4A/Contig131806//theVoid.Contig131806/0/Contig131806.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131806.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/41/4A/Contig131806//theVoid.Contig131806/0/Contig131806.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131806.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/41/4A/Contig131806//theVoid.Contig131806/0/Contig131806.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131806.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/41/4A/Contig131806//theVoid.Contig131806/0/Contig131806.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131806.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/41/4A/Contig131806//theVoid.Contig131806/0/Contig131806.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig131807 Length: 3734 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/E3/E4/Contig131807//theVoid.Contig131807/0/Contig131807.0.all.rb -species all -dir /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/E3/E4/Contig131807//theVoid.Contig131807/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131807.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/E3/E4/Contig131807//theVoid.Contig131807/0/Contig131807.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131807.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/E3/E4/Contig131807//theVoid.Contig131807/0/Contig131807.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131807.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/E3/E4/Contig131807//theVoid.Contig131807/0/Contig131807.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131807.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/E3/E4/Contig131807//theVoid.Contig131807/0/Contig131807.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131807.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/E3/E4/Contig131807//theVoid.Contig131807/0/Contig131807.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131807.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/E3/E4/Contig131807//theVoid.Contig131807/0/Contig131807.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131807.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/E3/E4/Contig131807//theVoid.Contig131807/0/Contig131807.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131807.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/E3/E4/Contig131807//theVoid.Contig131807/0/Contig131807.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131807.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/E3/E4/Contig131807//theVoid.Contig131807/0/Contig131807.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131807.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/E3/E4/Contig131807//theVoid.Contig131807/0/Contig131807.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131807.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/E3/E4/Contig131807//theVoid.Contig131807/0/Contig131807.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131807.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/E3/E4/Contig131807//theVoid.Contig131807/0/Contig131807.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131807.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/E3/E4/Contig131807//theVoid.Contig131807/0/Contig131807.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131807.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/E3/E4/Contig131807//theVoid.Contig131807/0/Contig131807.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131807.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/E3/E4/Contig131807//theVoid.Contig131807/0/Contig131807.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131807.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/E3/E4/Contig131807//theVoid.Contig131807/0/Contig131807.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131807.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/E3/E4/Contig131807//theVoid.Contig131807/0/Contig131807.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131807.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/E3/E4/Contig131807//theVoid.Contig131807/0/Contig131807.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131807.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/E3/E4/Contig131807//theVoid.Contig131807/0/Contig131807.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-11378/t.55/cctools-temp-t.55.YMLDIO/maker__Rfp1B/0/Contig131807.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.55/Olurida_v081.maker.output/Olurida_v081_datastore/E3/E4/Contig131807//theVoid.Contig131807/0/Contig131807.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output Maker is now finished!!! Start_time: 1533652910 End_time: 1533653190 Elapsed: 280 ================================= Argument "2.53_01" isn't numeric in numeric ge (>=) at /usr/local/lib/x86_64-linux-gnu/perl/5.22.1/forks.pm line 1570. Unknown option: debug_size_limit STATUS: Parsing control files... STATUS: Processing and indexing input FASTA files... STATUS: Setting up database for any GFF3 input... A data structure will be created for you at: /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore To access files for individual sequences use the datastore index: /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_master_datastore_index.log STATUS: Now running MAKER... examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig92526 Length: 1157 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/F4/2C/Contig92526//theVoid.Contig92526/0/Contig92526.0.all.rb -species all -dir /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/F4/2C/Contig92526//theVoid.Contig92526/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92526.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/F4/2C/Contig92526//theVoid.Contig92526/0/Contig92526.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92526.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/F4/2C/Contig92526//theVoid.Contig92526/0/Contig92526.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92526.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/F4/2C/Contig92526//theVoid.Contig92526/0/Contig92526.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92526.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/F4/2C/Contig92526//theVoid.Contig92526/0/Contig92526.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92526.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/F4/2C/Contig92526//theVoid.Contig92526/0/Contig92526.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92526.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/F4/2C/Contig92526//theVoid.Contig92526/0/Contig92526.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92526.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/F4/2C/Contig92526//theVoid.Contig92526/0/Contig92526.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92526.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/F4/2C/Contig92526//theVoid.Contig92526/0/Contig92526.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92526.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/F4/2C/Contig92526//theVoid.Contig92526/0/Contig92526.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92526.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/F4/2C/Contig92526//theVoid.Contig92526/0/Contig92526.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92526.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/F4/2C/Contig92526//theVoid.Contig92526/0/Contig92526.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92526.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/F4/2C/Contig92526//theVoid.Contig92526/0/Contig92526.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92526.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/F4/2C/Contig92526//theVoid.Contig92526/0/Contig92526.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92526.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/F4/2C/Contig92526//theVoid.Contig92526/0/Contig92526.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92526.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/F4/2C/Contig92526//theVoid.Contig92526/0/Contig92526.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92526.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/F4/2C/Contig92526//theVoid.Contig92526/0/Contig92526.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92526.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/F4/2C/Contig92526//theVoid.Contig92526/0/Contig92526.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92526.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/F4/2C/Contig92526//theVoid.Contig92526/0/Contig92526.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92526.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/F4/2C/Contig92526//theVoid.Contig92526/0/Contig92526.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92526.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/F4/2C/Contig92526//theVoid.Contig92526/0/Contig92526.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig92527 Length: 1367 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/A5/BF/Contig92527//theVoid.Contig92527/0/Contig92527.0.all.rb -species all -dir /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/A5/BF/Contig92527//theVoid.Contig92527/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92527.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/A5/BF/Contig92527//theVoid.Contig92527/0/Contig92527.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92527.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/A5/BF/Contig92527//theVoid.Contig92527/0/Contig92527.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92527.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/A5/BF/Contig92527//theVoid.Contig92527/0/Contig92527.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92527.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/A5/BF/Contig92527//theVoid.Contig92527/0/Contig92527.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92527.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/A5/BF/Contig92527//theVoid.Contig92527/0/Contig92527.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92527.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/A5/BF/Contig92527//theVoid.Contig92527/0/Contig92527.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92527.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/A5/BF/Contig92527//theVoid.Contig92527/0/Contig92527.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92527.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/A5/BF/Contig92527//theVoid.Contig92527/0/Contig92527.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92527.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/A5/BF/Contig92527//theVoid.Contig92527/0/Contig92527.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92527.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/A5/BF/Contig92527//theVoid.Contig92527/0/Contig92527.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92527.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/A5/BF/Contig92527//theVoid.Contig92527/0/Contig92527.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92527.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/A5/BF/Contig92527//theVoid.Contig92527/0/Contig92527.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92527.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/A5/BF/Contig92527//theVoid.Contig92527/0/Contig92527.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92527.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/A5/BF/Contig92527//theVoid.Contig92527/0/Contig92527.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92527.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/A5/BF/Contig92527//theVoid.Contig92527/0/Contig92527.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92527.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/A5/BF/Contig92527//theVoid.Contig92527/0/Contig92527.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92527.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/A5/BF/Contig92527//theVoid.Contig92527/0/Contig92527.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92527.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/A5/BF/Contig92527//theVoid.Contig92527/0/Contig92527.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92527.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/A5/BF/Contig92527//theVoid.Contig92527/0/Contig92527.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92527.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/A5/BF/Contig92527//theVoid.Contig92527/0/Contig92527.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig92528 Length: 13437 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/ED/13/Contig92528//theVoid.Contig92528/0/Contig92528.0.all.rb -species all -dir /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/ED/13/Contig92528//theVoid.Contig92528/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92528.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/ED/13/Contig92528//theVoid.Contig92528/0/Contig92528.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92528.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/ED/13/Contig92528//theVoid.Contig92528/0/Contig92528.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92528.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/ED/13/Contig92528//theVoid.Contig92528/0/Contig92528.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92528.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/ED/13/Contig92528//theVoid.Contig92528/0/Contig92528.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92528.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/ED/13/Contig92528//theVoid.Contig92528/0/Contig92528.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92528.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/ED/13/Contig92528//theVoid.Contig92528/0/Contig92528.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92528.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/ED/13/Contig92528//theVoid.Contig92528/0/Contig92528.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92528.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/ED/13/Contig92528//theVoid.Contig92528/0/Contig92528.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92528.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/ED/13/Contig92528//theVoid.Contig92528/0/Contig92528.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92528.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/ED/13/Contig92528//theVoid.Contig92528/0/Contig92528.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:3 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92528.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/ED/13/Contig92528//theVoid.Contig92528/0/Contig92528.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92528.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/ED/13/Contig92528//theVoid.Contig92528/0/Contig92528.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92528.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/ED/13/Contig92528//theVoid.Contig92528/0/Contig92528.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92528.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/ED/13/Contig92528//theVoid.Contig92528/0/Contig92528.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92528.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/ED/13/Contig92528//theVoid.Contig92528/0/Contig92528.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92528.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/ED/13/Contig92528//theVoid.Contig92528/0/Contig92528.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92528.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/ED/13/Contig92528//theVoid.Contig92528/0/Contig92528.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92528.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/ED/13/Contig92528//theVoid.Contig92528/0/Contig92528.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92528.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/ED/13/Contig92528//theVoid.Contig92528/0/Contig92528.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92528.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/ED/13/Contig92528//theVoid.Contig92528/0/Contig92528.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig92529 Length: 7912 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/FA/FE/Contig92529//theVoid.Contig92529/0/Contig92529.0.all.rb -species all -dir /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/FA/FE/Contig92529//theVoid.Contig92529/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92529.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/FA/FE/Contig92529//theVoid.Contig92529/0/Contig92529.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92529.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/FA/FE/Contig92529//theVoid.Contig92529/0/Contig92529.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92529.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/FA/FE/Contig92529//theVoid.Contig92529/0/Contig92529.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92529.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/FA/FE/Contig92529//theVoid.Contig92529/0/Contig92529.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92529.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/FA/FE/Contig92529//theVoid.Contig92529/0/Contig92529.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92529.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/FA/FE/Contig92529//theVoid.Contig92529/0/Contig92529.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92529.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/FA/FE/Contig92529//theVoid.Contig92529/0/Contig92529.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92529.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/FA/FE/Contig92529//theVoid.Contig92529/0/Contig92529.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92529.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/FA/FE/Contig92529//theVoid.Contig92529/0/Contig92529.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92529.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/FA/FE/Contig92529//theVoid.Contig92529/0/Contig92529.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:3 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/comp22220_c2_seq1.for.3323-4475.0.fasta -t /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92529.3323-4475.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92529.3323-4475.comp22220_c2_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/comp47609_c0_seq1.for.1-6847.0.fasta -t /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92529.1-6847.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92529.1-6847.comp47609_c0_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/comp23159_c0_seq1.for.4184-5944.0.fasta -t /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92529.4184-5944.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92529.4184-5944.comp23159_c0_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/comp22220_c1_seq1.for.2650-3852.0.fasta -t /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92529.2650-3852.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92529.2650-3852.comp22220_c1_seq1.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:4 now processing 0 total clusters:4 now processing 0 total clusters:4 now processing 0 total clusters:4 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92529.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/FA/FE/Contig92529//theVoid.Contig92529/0/Contig92529.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92529.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/FA/FE/Contig92529//theVoid.Contig92529/0/Contig92529.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92529.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/FA/FE/Contig92529//theVoid.Contig92529/0/Contig92529.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92529.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/FA/FE/Contig92529//theVoid.Contig92529/0/Contig92529.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92529.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/FA/FE/Contig92529//theVoid.Contig92529/0/Contig92529.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92529.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/FA/FE/Contig92529//theVoid.Contig92529/0/Contig92529.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92529.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/FA/FE/Contig92529//theVoid.Contig92529/0/Contig92529.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92529.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/FA/FE/Contig92529//theVoid.Contig92529/0/Contig92529.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92529.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/FA/FE/Contig92529//theVoid.Contig92529/0/Contig92529.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92529.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/FA/FE/Contig92529//theVoid.Contig92529/0/Contig92529.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig92530 Length: 1813 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/C3/E5/Contig92530//theVoid.Contig92530/0/Contig92530.0.all.rb -species all -dir /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/C3/E5/Contig92530//theVoid.Contig92530/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92530.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/C3/E5/Contig92530//theVoid.Contig92530/0/Contig92530.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92530.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/C3/E5/Contig92530//theVoid.Contig92530/0/Contig92530.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92530.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/C3/E5/Contig92530//theVoid.Contig92530/0/Contig92530.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92530.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/C3/E5/Contig92530//theVoid.Contig92530/0/Contig92530.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92530.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/C3/E5/Contig92530//theVoid.Contig92530/0/Contig92530.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92530.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/C3/E5/Contig92530//theVoid.Contig92530/0/Contig92530.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92530.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/C3/E5/Contig92530//theVoid.Contig92530/0/Contig92530.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92530.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/C3/E5/Contig92530//theVoid.Contig92530/0/Contig92530.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92530.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/C3/E5/Contig92530//theVoid.Contig92530/0/Contig92530.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92530.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/C3/E5/Contig92530//theVoid.Contig92530/0/Contig92530.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/comp41502_c3_seq14.for.90-1104.0.fasta -t /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92530.90-1104.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92530.90-1104.comp41502_c3_seq14.e.exonerate #-------------------------------# cleaning blastn... flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92530.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/C3/E5/Contig92530//theVoid.Contig92530/0/Contig92530.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:6 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92530.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/C3/E5/Contig92530//theVoid.Contig92530/0/Contig92530.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92530.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/C3/E5/Contig92530//theVoid.Contig92530/0/Contig92530.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92530.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/C3/E5/Contig92530//theVoid.Contig92530/0/Contig92530.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92530.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/C3/E5/Contig92530//theVoid.Contig92530/0/Contig92530.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92530.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/C3/E5/Contig92530//theVoid.Contig92530/0/Contig92530.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92530.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/C3/E5/Contig92530//theVoid.Contig92530/0/Contig92530.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:5 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92530.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/C3/E5/Contig92530//theVoid.Contig92530/0/Contig92530.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92530.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/C3/E5/Contig92530//theVoid.Contig92530/0/Contig92530.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92530.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/C3/E5/Contig92530//theVoid.Contig92530/0/Contig92530.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:1 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/XP_022303611%2E1.for.373-1394.0.fasta -t /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92530.373-1394.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92530.373-1394.XP_022303611%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/XP_022300722%2E1.for.376-1406.0.fasta -t /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92530.376-1406.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92530.376-1406.XP_022300722%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/XP_022308362%2E1.for.379-1313.0.fasta -t /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92530.379-1313.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92530.379-1313.XP_022308362%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/XP_022288113%2E1.for.376-1427.0.fasta -t /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92530.376-1427.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92530.376-1427.XP_022288113%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/XP_022287034%2E1.for.376-1427.0.fasta -t /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92530.376-1427.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92530.376-1427.XP_022287034%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/EKC27642%2E1.for.382-1388.0.fasta -t /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92530.382-1388.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92530.382-1388.EKC27642%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/EKC32143%2E1.for.382-1394.0.fasta -t /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92530.382-1394.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92530.382-1394.EKC32143%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/EKC40203%2E1.for.376-1406.0.fasta -t /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92530.376-1406.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92530.376-1406.EKC40203%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/EKC42815%2E1.for.382-1394.0.fasta -t /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92530.382-1394.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92530.382-1394.EKC42815%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/EKC21116%2E1.for.376-1388.0.fasta -t /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92530.376-1388.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92530.376-1388.EKC21116%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/EKC26396%2E1.for.379-1394.0.fasta -t /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92530.379-1394.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92530.379-1394.EKC26396%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/EKC30517%2E1.for.382-1394.0.fasta -t /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92530.382-1394.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92530.382-1394.EKC30517%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/XP_022303610%2E1.for.376-1394.0.fasta -t /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92530.376-1394.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92530.376-1394.XP_022303610%2E1.p.exonerate #-------------------------------# cleaning blastx... flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig92532 Length: 1599 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/91/E5/Contig92532//theVoid.Contig92532/0/Contig92532.0.all.rb -species all -dir /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/91/E5/Contig92532//theVoid.Contig92532/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92532.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/91/E5/Contig92532//theVoid.Contig92532/0/Contig92532.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92532.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/91/E5/Contig92532//theVoid.Contig92532/0/Contig92532.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92532.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/91/E5/Contig92532//theVoid.Contig92532/0/Contig92532.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92532.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/91/E5/Contig92532//theVoid.Contig92532/0/Contig92532.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92532.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/91/E5/Contig92532//theVoid.Contig92532/0/Contig92532.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92532.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/91/E5/Contig92532//theVoid.Contig92532/0/Contig92532.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92532.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/91/E5/Contig92532//theVoid.Contig92532/0/Contig92532.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92532.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/91/E5/Contig92532//theVoid.Contig92532/0/Contig92532.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92532.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/91/E5/Contig92532//theVoid.Contig92532/0/Contig92532.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92532.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/91/E5/Contig92532//theVoid.Contig92532/0/Contig92532.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92532.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/91/E5/Contig92532//theVoid.Contig92532/0/Contig92532.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92532.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/91/E5/Contig92532//theVoid.Contig92532/0/Contig92532.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92532.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/91/E5/Contig92532//theVoid.Contig92532/0/Contig92532.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92532.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/91/E5/Contig92532//theVoid.Contig92532/0/Contig92532.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92532.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/91/E5/Contig92532//theVoid.Contig92532/0/Contig92532.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92532.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/91/E5/Contig92532//theVoid.Contig92532/0/Contig92532.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92532.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/91/E5/Contig92532//theVoid.Contig92532/0/Contig92532.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92532.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/91/E5/Contig92532//theVoid.Contig92532/0/Contig92532.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92532.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/91/E5/Contig92532//theVoid.Contig92532/0/Contig92532.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92532.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/91/E5/Contig92532//theVoid.Contig92532/0/Contig92532.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig92533 Length: 1188 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/A2/4B/Contig92533//theVoid.Contig92533/0/Contig92533.0.all.rb -species all -dir /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/A2/4B/Contig92533//theVoid.Contig92533/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92533.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/A2/4B/Contig92533//theVoid.Contig92533/0/Contig92533.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92533.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/A2/4B/Contig92533//theVoid.Contig92533/0/Contig92533.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92533.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/A2/4B/Contig92533//theVoid.Contig92533/0/Contig92533.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92533.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/A2/4B/Contig92533//theVoid.Contig92533/0/Contig92533.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92533.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/A2/4B/Contig92533//theVoid.Contig92533/0/Contig92533.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92533.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/A2/4B/Contig92533//theVoid.Contig92533/0/Contig92533.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92533.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/A2/4B/Contig92533//theVoid.Contig92533/0/Contig92533.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92533.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/A2/4B/Contig92533//theVoid.Contig92533/0/Contig92533.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92533.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/A2/4B/Contig92533//theVoid.Contig92533/0/Contig92533.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92533.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/A2/4B/Contig92533//theVoid.Contig92533/0/Contig92533.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92533.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/A2/4B/Contig92533//theVoid.Contig92533/0/Contig92533.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92533.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/A2/4B/Contig92533//theVoid.Contig92533/0/Contig92533.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92533.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/A2/4B/Contig92533//theVoid.Contig92533/0/Contig92533.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92533.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/A2/4B/Contig92533//theVoid.Contig92533/0/Contig92533.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92533.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/A2/4B/Contig92533//theVoid.Contig92533/0/Contig92533.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92533.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/A2/4B/Contig92533//theVoid.Contig92533/0/Contig92533.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92533.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/A2/4B/Contig92533//theVoid.Contig92533/0/Contig92533.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92533.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/A2/4B/Contig92533//theVoid.Contig92533/0/Contig92533.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92533.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/A2/4B/Contig92533//theVoid.Contig92533/0/Contig92533.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92533.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/A2/4B/Contig92533//theVoid.Contig92533/0/Contig92533.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig92534 Length: 4625 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/F5/E1/Contig92534//theVoid.Contig92534/0/Contig92534.0.all.rb -species all -dir /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/F5/E1/Contig92534//theVoid.Contig92534/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92534.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/F5/E1/Contig92534//theVoid.Contig92534/0/Contig92534.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92534.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/F5/E1/Contig92534//theVoid.Contig92534/0/Contig92534.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92534.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/F5/E1/Contig92534//theVoid.Contig92534/0/Contig92534.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92534.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/F5/E1/Contig92534//theVoid.Contig92534/0/Contig92534.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92534.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/F5/E1/Contig92534//theVoid.Contig92534/0/Contig92534.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92534.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/F5/E1/Contig92534//theVoid.Contig92534/0/Contig92534.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92534.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/F5/E1/Contig92534//theVoid.Contig92534/0/Contig92534.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92534.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/F5/E1/Contig92534//theVoid.Contig92534/0/Contig92534.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92534.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/F5/E1/Contig92534//theVoid.Contig92534/0/Contig92534.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92534.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/F5/E1/Contig92534//theVoid.Contig92534/0/Contig92534.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/comp43290_c0_seq4.for.1-806.0.fasta -t /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92534.1-806.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92534.1-806.comp43290_c0_seq4.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/comp43290_c0_seq10.for.1-806.0.fasta -t /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92534.1-806.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92534.1-806.comp43290_c0_seq10.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/comp43290_c0_seq2.for.1-806.0.fasta -t /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92534.1-806.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92534.1-806.comp43290_c0_seq2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/comp35367_c0_seq2.for.1432-2554.0.fasta -t /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92534.1432-2554.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92534.1432-2554.comp35367_c0_seq2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/comp35367_c0_seq3.for.1552-2526.0.fasta -t /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92534.1552-2526.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92534.1552-2526.comp35367_c0_seq3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/comp35367_c0_seq4.for.1432-2526.0.fasta -t /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92534.1432-2526.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92534.1432-2526.comp35367_c0_seq4.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/comp35367_c0_seq1.for.1552-2554.0.fasta -t /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92534.1552-2554.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92534.1552-2554.comp35367_c0_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/comp41703_c0_seq1.for.2220-3704.0.fasta -t /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92534.2220-3704.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92534.2220-3704.comp41703_c0_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/comp41703_c0_seq2.for.2220-3703.0.fasta -t /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92534.2220-3703.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92534.2220-3703.comp41703_c0_seq2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/comp41703_c0_seq3.for.2220-3703.0.fasta -t /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92534.2220-3703.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92534.2220-3703.comp41703_c0_seq3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/comp41703_c0_seq6.for.2220-3704.0.fasta -t /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92534.2220-3704.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92534.2220-3704.comp41703_c0_seq6.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:4 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:4 now processing 0 total clusters:4 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 total clusters:4 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92534.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/F5/E1/Contig92534//theVoid.Contig92534/0/Contig92534.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92534.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/F5/E1/Contig92534//theVoid.Contig92534/0/Contig92534.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92534.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/F5/E1/Contig92534//theVoid.Contig92534/0/Contig92534.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92534.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/F5/E1/Contig92534//theVoid.Contig92534/0/Contig92534.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92534.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/F5/E1/Contig92534//theVoid.Contig92534/0/Contig92534.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92534.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/F5/E1/Contig92534//theVoid.Contig92534/0/Contig92534.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92534.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/F5/E1/Contig92534//theVoid.Contig92534/0/Contig92534.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92534.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/F5/E1/Contig92534//theVoid.Contig92534/0/Contig92534.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92534.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/F5/E1/Contig92534//theVoid.Contig92534/0/Contig92534.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92534.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/F5/E1/Contig92534//theVoid.Contig92534/0/Contig92534.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/EKC33970%2E1.for.1-835.0.fasta -t /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92534.1-835.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92534.1-835.EKC33970%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/EKC21180%2E1.for.1-835.0.fasta -t /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92534.1-835.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92534.1-835.EKC21180%2E1.p.exonerate #-------------------------------# cleaning blastx... flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig92535 Length: 6261 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/EA/24/Contig92535//theVoid.Contig92535/0/Contig92535.0.all.rb -species all -dir /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/EA/24/Contig92535//theVoid.Contig92535/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92535.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/EA/24/Contig92535//theVoid.Contig92535/0/Contig92535.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92535.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/EA/24/Contig92535//theVoid.Contig92535/0/Contig92535.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92535.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/EA/24/Contig92535//theVoid.Contig92535/0/Contig92535.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92535.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/EA/24/Contig92535//theVoid.Contig92535/0/Contig92535.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92535.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/EA/24/Contig92535//theVoid.Contig92535/0/Contig92535.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92535.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/EA/24/Contig92535//theVoid.Contig92535/0/Contig92535.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92535.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/EA/24/Contig92535//theVoid.Contig92535/0/Contig92535.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92535.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/EA/24/Contig92535//theVoid.Contig92535/0/Contig92535.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92535.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/EA/24/Contig92535//theVoid.Contig92535/0/Contig92535.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92535.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/EA/24/Contig92535//theVoid.Contig92535/0/Contig92535.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92535.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/EA/24/Contig92535//theVoid.Contig92535/0/Contig92535.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92535.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/EA/24/Contig92535//theVoid.Contig92535/0/Contig92535.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92535.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/EA/24/Contig92535//theVoid.Contig92535/0/Contig92535.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92535.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/EA/24/Contig92535//theVoid.Contig92535/0/Contig92535.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92535.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/EA/24/Contig92535//theVoid.Contig92535/0/Contig92535.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92535.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/EA/24/Contig92535//theVoid.Contig92535/0/Contig92535.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92535.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/EA/24/Contig92535//theVoid.Contig92535/0/Contig92535.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92535.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/EA/24/Contig92535//theVoid.Contig92535/0/Contig92535.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92535.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/EA/24/Contig92535//theVoid.Contig92535/0/Contig92535.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92535.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/EA/24/Contig92535//theVoid.Contig92535/0/Contig92535.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig92536 Length: 1437 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/7E/B9/Contig92536//theVoid.Contig92536/0/Contig92536.0.all.rb -species all -dir /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/7E/B9/Contig92536//theVoid.Contig92536/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92536.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/7E/B9/Contig92536//theVoid.Contig92536/0/Contig92536.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92536.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/7E/B9/Contig92536//theVoid.Contig92536/0/Contig92536.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92536.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/7E/B9/Contig92536//theVoid.Contig92536/0/Contig92536.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92536.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/7E/B9/Contig92536//theVoid.Contig92536/0/Contig92536.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92536.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/7E/B9/Contig92536//theVoid.Contig92536/0/Contig92536.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92536.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/7E/B9/Contig92536//theVoid.Contig92536/0/Contig92536.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92536.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/7E/B9/Contig92536//theVoid.Contig92536/0/Contig92536.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92536.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/7E/B9/Contig92536//theVoid.Contig92536/0/Contig92536.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92536.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/7E/B9/Contig92536//theVoid.Contig92536/0/Contig92536.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92536.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/7E/B9/Contig92536//theVoid.Contig92536/0/Contig92536.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92536.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/7E/B9/Contig92536//theVoid.Contig92536/0/Contig92536.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92536.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/7E/B9/Contig92536//theVoid.Contig92536/0/Contig92536.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92536.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/7E/B9/Contig92536//theVoid.Contig92536/0/Contig92536.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92536.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/7E/B9/Contig92536//theVoid.Contig92536/0/Contig92536.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92536.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/7E/B9/Contig92536//theVoid.Contig92536/0/Contig92536.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92536.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/7E/B9/Contig92536//theVoid.Contig92536/0/Contig92536.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92536.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/7E/B9/Contig92536//theVoid.Contig92536/0/Contig92536.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92536.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/7E/B9/Contig92536//theVoid.Contig92536/0/Contig92536.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92536.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/7E/B9/Contig92536//theVoid.Contig92536/0/Contig92536.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-11378/t.54/cctools-temp-t.54.9jgiQL/maker_diJv2O/0/Contig92536.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.54/Olurida_v081.maker.output/Olurida_v081_datastore/7E/B9/Contig92536//theVoid.Contig92536/0/Contig92536.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output Maker is now finished!!! Start_time: 1533652910 End_time: 1533653196 Elapsed: 286 ================================= Argument "2.53_01" isn't numeric in numeric ge (>=) at /usr/local/lib/x86_64-linux-gnu/perl/5.22.1/forks.pm line 1570. Unknown option: debug_size_limit STATUS: Parsing control files... STATUS: Processing and indexing input FASTA files... STATUS: Setting up database for any GFF3 input... A data structure will be created for you at: /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore To access files for individual sequences use the datastore index: /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_master_datastore_index.log STATUS: Now running MAKER... examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig132400 Length: 2426 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/AF/D2/Contig132400//theVoid.Contig132400/0/Contig132400.0.all.rb -species all -dir /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/AF/D2/Contig132400//theVoid.Contig132400/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132400.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/AF/D2/Contig132400//theVoid.Contig132400/0/Contig132400.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132400.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/AF/D2/Contig132400//theVoid.Contig132400/0/Contig132400.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132400.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/AF/D2/Contig132400//theVoid.Contig132400/0/Contig132400.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132400.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/AF/D2/Contig132400//theVoid.Contig132400/0/Contig132400.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132400.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/AF/D2/Contig132400//theVoid.Contig132400/0/Contig132400.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132400.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/AF/D2/Contig132400//theVoid.Contig132400/0/Contig132400.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132400.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/AF/D2/Contig132400//theVoid.Contig132400/0/Contig132400.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132400.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/AF/D2/Contig132400//theVoid.Contig132400/0/Contig132400.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132400.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/AF/D2/Contig132400//theVoid.Contig132400/0/Contig132400.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132400.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/AF/D2/Contig132400//theVoid.Contig132400/0/Contig132400.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/comp39281_c3_seq2.for.77-1195.0.fasta -t /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132400.77-1195.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132400.77-1195.comp39281_c3_seq2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/comp39281_c3_seq6.for.235-1195.0.fasta -t /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132400.235-1195.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132400.235-1195.comp39281_c3_seq6.e.exonerate #-------------------------------# cleaning blastn... cleaning clusters.... total clusters:1 now processing 0 flattening EST clusters doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132400.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/AF/D2/Contig132400//theVoid.Contig132400/0/Contig132400.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132400.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/AF/D2/Contig132400//theVoid.Contig132400/0/Contig132400.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132400.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/AF/D2/Contig132400//theVoid.Contig132400/0/Contig132400.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132400.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/AF/D2/Contig132400//theVoid.Contig132400/0/Contig132400.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132400.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/AF/D2/Contig132400//theVoid.Contig132400/0/Contig132400.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132400.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/AF/D2/Contig132400//theVoid.Contig132400/0/Contig132400.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132400.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/AF/D2/Contig132400//theVoid.Contig132400/0/Contig132400.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132400.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/AF/D2/Contig132400//theVoid.Contig132400/0/Contig132400.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132400.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/AF/D2/Contig132400//theVoid.Contig132400/0/Contig132400.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132400.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/AF/D2/Contig132400//theVoid.Contig132400/0/Contig132400.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig132401 Length: 1444 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/54/30/Contig132401//theVoid.Contig132401/0/Contig132401.0.all.rb -species all -dir /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/54/30/Contig132401//theVoid.Contig132401/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132401.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/54/30/Contig132401//theVoid.Contig132401/0/Contig132401.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132401.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/54/30/Contig132401//theVoid.Contig132401/0/Contig132401.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132401.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/54/30/Contig132401//theVoid.Contig132401/0/Contig132401.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132401.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/54/30/Contig132401//theVoid.Contig132401/0/Contig132401.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132401.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/54/30/Contig132401//theVoid.Contig132401/0/Contig132401.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132401.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/54/30/Contig132401//theVoid.Contig132401/0/Contig132401.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132401.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/54/30/Contig132401//theVoid.Contig132401/0/Contig132401.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132401.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/54/30/Contig132401//theVoid.Contig132401/0/Contig132401.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132401.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/54/30/Contig132401//theVoid.Contig132401/0/Contig132401.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132401.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/54/30/Contig132401//theVoid.Contig132401/0/Contig132401.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132401.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/54/30/Contig132401//theVoid.Contig132401/0/Contig132401.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132401.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/54/30/Contig132401//theVoid.Contig132401/0/Contig132401.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132401.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/54/30/Contig132401//theVoid.Contig132401/0/Contig132401.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132401.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/54/30/Contig132401//theVoid.Contig132401/0/Contig132401.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132401.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/54/30/Contig132401//theVoid.Contig132401/0/Contig132401.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132401.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/54/30/Contig132401//theVoid.Contig132401/0/Contig132401.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132401.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/54/30/Contig132401//theVoid.Contig132401/0/Contig132401.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132401.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/54/30/Contig132401//theVoid.Contig132401/0/Contig132401.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132401.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/54/30/Contig132401//theVoid.Contig132401/0/Contig132401.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132401.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/54/30/Contig132401//theVoid.Contig132401/0/Contig132401.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig132402 Length: 2087 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/AE/69/Contig132402//theVoid.Contig132402/0/Contig132402.0.all.rb -species all -dir /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/AE/69/Contig132402//theVoid.Contig132402/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132402.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/AE/69/Contig132402//theVoid.Contig132402/0/Contig132402.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132402.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/AE/69/Contig132402//theVoid.Contig132402/0/Contig132402.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132402.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/AE/69/Contig132402//theVoid.Contig132402/0/Contig132402.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132402.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/AE/69/Contig132402//theVoid.Contig132402/0/Contig132402.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132402.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/AE/69/Contig132402//theVoid.Contig132402/0/Contig132402.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132402.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/AE/69/Contig132402//theVoid.Contig132402/0/Contig132402.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132402.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/AE/69/Contig132402//theVoid.Contig132402/0/Contig132402.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132402.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/AE/69/Contig132402//theVoid.Contig132402/0/Contig132402.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132402.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/AE/69/Contig132402//theVoid.Contig132402/0/Contig132402.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132402.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/AE/69/Contig132402//theVoid.Contig132402/0/Contig132402.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132402.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/AE/69/Contig132402//theVoid.Contig132402/0/Contig132402.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132402.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/AE/69/Contig132402//theVoid.Contig132402/0/Contig132402.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132402.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/AE/69/Contig132402//theVoid.Contig132402/0/Contig132402.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132402.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/AE/69/Contig132402//theVoid.Contig132402/0/Contig132402.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132402.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/AE/69/Contig132402//theVoid.Contig132402/0/Contig132402.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132402.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/AE/69/Contig132402//theVoid.Contig132402/0/Contig132402.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132402.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/AE/69/Contig132402//theVoid.Contig132402/0/Contig132402.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132402.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/AE/69/Contig132402//theVoid.Contig132402/0/Contig132402.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132402.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/AE/69/Contig132402//theVoid.Contig132402/0/Contig132402.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132402.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/AE/69/Contig132402//theVoid.Contig132402/0/Contig132402.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig132404 Length: 10693 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/61/B8/Contig132404//theVoid.Contig132404/0/Contig132404.0.all.rb -species all -dir /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/61/B8/Contig132404//theVoid.Contig132404/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132404.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/61/B8/Contig132404//theVoid.Contig132404/0/Contig132404.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132404.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/61/B8/Contig132404//theVoid.Contig132404/0/Contig132404.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132404.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/61/B8/Contig132404//theVoid.Contig132404/0/Contig132404.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132404.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/61/B8/Contig132404//theVoid.Contig132404/0/Contig132404.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132404.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/61/B8/Contig132404//theVoid.Contig132404/0/Contig132404.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132404.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/61/B8/Contig132404//theVoid.Contig132404/0/Contig132404.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132404.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/61/B8/Contig132404//theVoid.Contig132404/0/Contig132404.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132404.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/61/B8/Contig132404//theVoid.Contig132404/0/Contig132404.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132404.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/61/B8/Contig132404//theVoid.Contig132404/0/Contig132404.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132404.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/61/B8/Contig132404//theVoid.Contig132404/0/Contig132404.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:4 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/comp25075_c0_seq1.for.1483-2442.0.fasta -t /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132404.1483-2442.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132404.1483-2442.comp25075_c0_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/comp35501_c7_seq3.for.2922-3922.0.fasta -t /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132404.2922-3922.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132404.2922-3922.comp35501_c7_seq3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/comp42708_c1_seq1.for.4733-5715.0.fasta -t /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132404.4733-5715.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132404.4733-5715.comp42708_c1_seq1.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:2 now processing 0 total clusters:2 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132404.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/61/B8/Contig132404//theVoid.Contig132404/0/Contig132404.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132404.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/61/B8/Contig132404//theVoid.Contig132404/0/Contig132404.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132404.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/61/B8/Contig132404//theVoid.Contig132404/0/Contig132404.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132404.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/61/B8/Contig132404//theVoid.Contig132404/0/Contig132404.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132404.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/61/B8/Contig132404//theVoid.Contig132404/0/Contig132404.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132404.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/61/B8/Contig132404//theVoid.Contig132404/0/Contig132404.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132404.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/61/B8/Contig132404//theVoid.Contig132404/0/Contig132404.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132404.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/61/B8/Contig132404//theVoid.Contig132404/0/Contig132404.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132404.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/61/B8/Contig132404//theVoid.Contig132404/0/Contig132404.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132404.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/61/B8/Contig132404//theVoid.Contig132404/0/Contig132404.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:1 hits collecting blastx reports polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/EKC20136%2E1.for.6834-7873.0.fasta -t /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132404.6834-7873.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132404.6834-7873.EKC20136%2E1.p.exonerate #-------------------------------# cleaning blastx... flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig132405 Length: 4953 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/39/85/Contig132405//theVoid.Contig132405/0/Contig132405.0.all.rb -species all -dir /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/39/85/Contig132405//theVoid.Contig132405/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132405.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/39/85/Contig132405//theVoid.Contig132405/0/Contig132405.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132405.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/39/85/Contig132405//theVoid.Contig132405/0/Contig132405.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132405.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/39/85/Contig132405//theVoid.Contig132405/0/Contig132405.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132405.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/39/85/Contig132405//theVoid.Contig132405/0/Contig132405.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132405.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/39/85/Contig132405//theVoid.Contig132405/0/Contig132405.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132405.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/39/85/Contig132405//theVoid.Contig132405/0/Contig132405.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132405.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/39/85/Contig132405//theVoid.Contig132405/0/Contig132405.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132405.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/39/85/Contig132405//theVoid.Contig132405/0/Contig132405.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132405.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/39/85/Contig132405//theVoid.Contig132405/0/Contig132405.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132405.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/39/85/Contig132405//theVoid.Contig132405/0/Contig132405.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/comp41168_c1_seq4.for.3113-4156.0.fasta -t /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132405.3113-4156.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132405.3113-4156.comp41168_c1_seq4.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/comp41168_c1_seq7.for.2948-4156.0.fasta -t /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132405.2948-4156.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132405.2948-4156.comp41168_c1_seq7.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:1 now processing 0 ...processing 0 of 2 ...processing 1 of 2 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132405.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/39/85/Contig132405//theVoid.Contig132405/0/Contig132405.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132405.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/39/85/Contig132405//theVoid.Contig132405/0/Contig132405.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132405.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/39/85/Contig132405//theVoid.Contig132405/0/Contig132405.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132405.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/39/85/Contig132405//theVoid.Contig132405/0/Contig132405.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132405.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/39/85/Contig132405//theVoid.Contig132405/0/Contig132405.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132405.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/39/85/Contig132405//theVoid.Contig132405/0/Contig132405.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132405.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/39/85/Contig132405//theVoid.Contig132405/0/Contig132405.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132405.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/39/85/Contig132405//theVoid.Contig132405/0/Contig132405.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132405.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/39/85/Contig132405//theVoid.Contig132405/0/Contig132405.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132405.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/39/85/Contig132405//theVoid.Contig132405/0/Contig132405.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig132406 Length: 1208 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/F2/70/Contig132406//theVoid.Contig132406/0/Contig132406.0.all.rb -species all -dir /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/F2/70/Contig132406//theVoid.Contig132406/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132406.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/F2/70/Contig132406//theVoid.Contig132406/0/Contig132406.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132406.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/F2/70/Contig132406//theVoid.Contig132406/0/Contig132406.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132406.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/F2/70/Contig132406//theVoid.Contig132406/0/Contig132406.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132406.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/F2/70/Contig132406//theVoid.Contig132406/0/Contig132406.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132406.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/F2/70/Contig132406//theVoid.Contig132406/0/Contig132406.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132406.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/F2/70/Contig132406//theVoid.Contig132406/0/Contig132406.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132406.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/F2/70/Contig132406//theVoid.Contig132406/0/Contig132406.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132406.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/F2/70/Contig132406//theVoid.Contig132406/0/Contig132406.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132406.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/F2/70/Contig132406//theVoid.Contig132406/0/Contig132406.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132406.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/F2/70/Contig132406//theVoid.Contig132406/0/Contig132406.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132406.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/F2/70/Contig132406//theVoid.Contig132406/0/Contig132406.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132406.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/F2/70/Contig132406//theVoid.Contig132406/0/Contig132406.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132406.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/F2/70/Contig132406//theVoid.Contig132406/0/Contig132406.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132406.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/F2/70/Contig132406//theVoid.Contig132406/0/Contig132406.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132406.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/F2/70/Contig132406//theVoid.Contig132406/0/Contig132406.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132406.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/F2/70/Contig132406//theVoid.Contig132406/0/Contig132406.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132406.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/F2/70/Contig132406//theVoid.Contig132406/0/Contig132406.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132406.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/F2/70/Contig132406//theVoid.Contig132406/0/Contig132406.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132406.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/F2/70/Contig132406//theVoid.Contig132406/0/Contig132406.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132406.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/F2/70/Contig132406//theVoid.Contig132406/0/Contig132406.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig132407 Length: 5477 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/CC/60/Contig132407//theVoid.Contig132407/0/Contig132407.0.all.rb -species all -dir /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/CC/60/Contig132407//theVoid.Contig132407/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132407.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/CC/60/Contig132407//theVoid.Contig132407/0/Contig132407.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132407.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/CC/60/Contig132407//theVoid.Contig132407/0/Contig132407.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132407.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/CC/60/Contig132407//theVoid.Contig132407/0/Contig132407.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132407.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/CC/60/Contig132407//theVoid.Contig132407/0/Contig132407.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132407.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/CC/60/Contig132407//theVoid.Contig132407/0/Contig132407.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132407.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/CC/60/Contig132407//theVoid.Contig132407/0/Contig132407.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132407.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/CC/60/Contig132407//theVoid.Contig132407/0/Contig132407.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132407.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/CC/60/Contig132407//theVoid.Contig132407/0/Contig132407.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132407.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/CC/60/Contig132407//theVoid.Contig132407/0/Contig132407.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132407.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/CC/60/Contig132407//theVoid.Contig132407/0/Contig132407.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/comp32260_c0_seq1.for.4066-5199.0.fasta -t /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132407.4066-5199.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132407.4066-5199.comp32260_c0_seq1.e.exonerate #-------------------------------# cleaning blastn... flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132407.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/CC/60/Contig132407//theVoid.Contig132407/0/Contig132407.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132407.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/CC/60/Contig132407//theVoid.Contig132407/0/Contig132407.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132407.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/CC/60/Contig132407//theVoid.Contig132407/0/Contig132407.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132407.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/CC/60/Contig132407//theVoid.Contig132407/0/Contig132407.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132407.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/CC/60/Contig132407//theVoid.Contig132407/0/Contig132407.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132407.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/CC/60/Contig132407//theVoid.Contig132407/0/Contig132407.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132407.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/CC/60/Contig132407//theVoid.Contig132407/0/Contig132407.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132407.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/CC/60/Contig132407//theVoid.Contig132407/0/Contig132407.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132407.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/CC/60/Contig132407//theVoid.Contig132407/0/Contig132407.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132407.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/CC/60/Contig132407//theVoid.Contig132407/0/Contig132407.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/EKC41340%2E1.for.2647-3638.0.fasta -t /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132407.2647-3638.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132407.2647-3638.EKC41340%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/EKC17624%2E1.for.2647-3641.0.fasta -t /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132407.2647-3641.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132407.2647-3641.EKC17624%2E1.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:1 now processing 0 ...processing 0 of 2 ...processing 1 of 2 cleaning clusters.... total clusters:1 now processing 0 flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig132408 Length: 4032 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/4B/B3/Contig132408//theVoid.Contig132408/0/Contig132408.0.all.rb -species all -dir /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/4B/B3/Contig132408//theVoid.Contig132408/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132408.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/4B/B3/Contig132408//theVoid.Contig132408/0/Contig132408.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132408.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/4B/B3/Contig132408//theVoid.Contig132408/0/Contig132408.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132408.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/4B/B3/Contig132408//theVoid.Contig132408/0/Contig132408.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132408.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/4B/B3/Contig132408//theVoid.Contig132408/0/Contig132408.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132408.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/4B/B3/Contig132408//theVoid.Contig132408/0/Contig132408.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132408.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/4B/B3/Contig132408//theVoid.Contig132408/0/Contig132408.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132408.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/4B/B3/Contig132408//theVoid.Contig132408/0/Contig132408.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132408.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/4B/B3/Contig132408//theVoid.Contig132408/0/Contig132408.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132408.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/4B/B3/Contig132408//theVoid.Contig132408/0/Contig132408.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132408.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/4B/B3/Contig132408//theVoid.Contig132408/0/Contig132408.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132408.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/4B/B3/Contig132408//theVoid.Contig132408/0/Contig132408.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132408.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/4B/B3/Contig132408//theVoid.Contig132408/0/Contig132408.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132408.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/4B/B3/Contig132408//theVoid.Contig132408/0/Contig132408.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132408.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/4B/B3/Contig132408//theVoid.Contig132408/0/Contig132408.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132408.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/4B/B3/Contig132408//theVoid.Contig132408/0/Contig132408.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132408.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/4B/B3/Contig132408//theVoid.Contig132408/0/Contig132408.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132408.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/4B/B3/Contig132408//theVoid.Contig132408/0/Contig132408.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132408.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/4B/B3/Contig132408//theVoid.Contig132408/0/Contig132408.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132408.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/4B/B3/Contig132408//theVoid.Contig132408/0/Contig132408.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132408.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/4B/B3/Contig132408//theVoid.Contig132408/0/Contig132408.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig132409 Length: 1947 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/1F/21/Contig132409//theVoid.Contig132409/0/Contig132409.0.all.rb -species all -dir /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/1F/21/Contig132409//theVoid.Contig132409/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132409.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/1F/21/Contig132409//theVoid.Contig132409/0/Contig132409.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132409.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/1F/21/Contig132409//theVoid.Contig132409/0/Contig132409.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132409.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/1F/21/Contig132409//theVoid.Contig132409/0/Contig132409.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132409.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/1F/21/Contig132409//theVoid.Contig132409/0/Contig132409.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132409.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/1F/21/Contig132409//theVoid.Contig132409/0/Contig132409.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132409.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/1F/21/Contig132409//theVoid.Contig132409/0/Contig132409.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132409.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/1F/21/Contig132409//theVoid.Contig132409/0/Contig132409.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132409.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/1F/21/Contig132409//theVoid.Contig132409/0/Contig132409.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132409.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/1F/21/Contig132409//theVoid.Contig132409/0/Contig132409.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132409.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/1F/21/Contig132409//theVoid.Contig132409/0/Contig132409.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/comp41168_c1_seq4.for.895-1846.0.fasta -t /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132409.895-1846.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132409.895-1846.comp41168_c1_seq4.e.exonerate #-------------------------------# cleaning blastn... cleaning clusters.... total clusters:1 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132409.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/1F/21/Contig132409//theVoid.Contig132409/0/Contig132409.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132409.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/1F/21/Contig132409//theVoid.Contig132409/0/Contig132409.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132409.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/1F/21/Contig132409//theVoid.Contig132409/0/Contig132409.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132409.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/1F/21/Contig132409//theVoid.Contig132409/0/Contig132409.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132409.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/1F/21/Contig132409//theVoid.Contig132409/0/Contig132409.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132409.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/1F/21/Contig132409//theVoid.Contig132409/0/Contig132409.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132409.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/1F/21/Contig132409//theVoid.Contig132409/0/Contig132409.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132409.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/1F/21/Contig132409//theVoid.Contig132409/0/Contig132409.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132409.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/1F/21/Contig132409//theVoid.Contig132409/0/Contig132409.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132409.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/1F/21/Contig132409//theVoid.Contig132409/0/Contig132409.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:1 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig132410 Length: 1042 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/C7/15/Contig132410//theVoid.Contig132410/0/Contig132410.0.all.rb -species all -dir /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/C7/15/Contig132410//theVoid.Contig132410/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132410.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/C7/15/Contig132410//theVoid.Contig132410/0/Contig132410.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132410.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/C7/15/Contig132410//theVoid.Contig132410/0/Contig132410.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132410.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/C7/15/Contig132410//theVoid.Contig132410/0/Contig132410.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132410.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/C7/15/Contig132410//theVoid.Contig132410/0/Contig132410.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132410.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/C7/15/Contig132410//theVoid.Contig132410/0/Contig132410.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132410.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/C7/15/Contig132410//theVoid.Contig132410/0/Contig132410.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132410.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/C7/15/Contig132410//theVoid.Contig132410/0/Contig132410.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132410.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/C7/15/Contig132410//theVoid.Contig132410/0/Contig132410.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132410.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/C7/15/Contig132410//theVoid.Contig132410/0/Contig132410.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132410.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/C7/15/Contig132410//theVoid.Contig132410/0/Contig132410.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132410.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/C7/15/Contig132410//theVoid.Contig132410/0/Contig132410.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132410.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/C7/15/Contig132410//theVoid.Contig132410/0/Contig132410.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132410.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/C7/15/Contig132410//theVoid.Contig132410/0/Contig132410.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132410.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/C7/15/Contig132410//theVoid.Contig132410/0/Contig132410.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132410.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/C7/15/Contig132410//theVoid.Contig132410/0/Contig132410.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132410.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/C7/15/Contig132410//theVoid.Contig132410/0/Contig132410.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132410.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/C7/15/Contig132410//theVoid.Contig132410/0/Contig132410.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132410.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/C7/15/Contig132410//theVoid.Contig132410/0/Contig132410.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132410.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/C7/15/Contig132410//theVoid.Contig132410/0/Contig132410.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-11378/t.57/cctools-temp-t.57.mDJSyU/maker_jIpkBG/0/Contig132410.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.57/Olurida_v081.maker.output/Olurida_v081_datastore/C7/15/Contig132410//theVoid.Contig132410/0/Contig132410.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output Maker is now finished!!! Start_time: 1533652910 End_time: 1533653199 Elapsed: 289 ================================= Argument "2.53_01" isn't numeric in numeric ge (>=) at /usr/local/lib/x86_64-linux-gnu/perl/5.22.1/forks.pm line 1570. Unknown option: debug_size_limit STATUS: Parsing control files... STATUS: Processing and indexing input FASTA files... STATUS: Setting up database for any GFF3 input... A data structure will be created for you at: /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore To access files for individual sequences use the datastore index: /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_master_datastore_index.log STATUS: Now running MAKER... examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig177732 Length: 2880 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/A5/D4/Contig177732//theVoid.Contig177732/0/Contig177732.0.all.rb -species all -dir /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/A5/D4/Contig177732//theVoid.Contig177732/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177732.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/A5/D4/Contig177732//theVoid.Contig177732/0/Contig177732.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177732.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/A5/D4/Contig177732//theVoid.Contig177732/0/Contig177732.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177732.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/A5/D4/Contig177732//theVoid.Contig177732/0/Contig177732.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177732.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/A5/D4/Contig177732//theVoid.Contig177732/0/Contig177732.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177732.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/A5/D4/Contig177732//theVoid.Contig177732/0/Contig177732.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177732.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/A5/D4/Contig177732//theVoid.Contig177732/0/Contig177732.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177732.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/A5/D4/Contig177732//theVoid.Contig177732/0/Contig177732.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177732.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/A5/D4/Contig177732//theVoid.Contig177732/0/Contig177732.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177732.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/A5/D4/Contig177732//theVoid.Contig177732/0/Contig177732.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177732.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/A5/D4/Contig177732//theVoid.Contig177732/0/Contig177732.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/comp43290_c0_seq6.for.1-649.0.fasta -t /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177732.1-649.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177732.1-649.comp43290_c0_seq6.e.exonerate #-------------------------------# cleaning blastn... cleaning clusters.... total clusters:1 now processing 0 flattening EST clusters doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177732.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/A5/D4/Contig177732//theVoid.Contig177732/0/Contig177732.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177732.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/A5/D4/Contig177732//theVoid.Contig177732/0/Contig177732.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177732.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/A5/D4/Contig177732//theVoid.Contig177732/0/Contig177732.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177732.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/A5/D4/Contig177732//theVoid.Contig177732/0/Contig177732.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177732.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/A5/D4/Contig177732//theVoid.Contig177732/0/Contig177732.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177732.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/A5/D4/Contig177732//theVoid.Contig177732/0/Contig177732.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177732.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/A5/D4/Contig177732//theVoid.Contig177732/0/Contig177732.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177732.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/A5/D4/Contig177732//theVoid.Contig177732/0/Contig177732.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177732.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/A5/D4/Contig177732//theVoid.Contig177732/0/Contig177732.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177732.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/A5/D4/Contig177732//theVoid.Contig177732/0/Contig177732.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig177736 Length: 2086 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/09/06/Contig177736//theVoid.Contig177736/0/Contig177736.0.all.rb -species all -dir /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/09/06/Contig177736//theVoid.Contig177736/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177736.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/09/06/Contig177736//theVoid.Contig177736/0/Contig177736.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177736.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/09/06/Contig177736//theVoid.Contig177736/0/Contig177736.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177736.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/09/06/Contig177736//theVoid.Contig177736/0/Contig177736.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177736.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/09/06/Contig177736//theVoid.Contig177736/0/Contig177736.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177736.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/09/06/Contig177736//theVoid.Contig177736/0/Contig177736.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177736.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/09/06/Contig177736//theVoid.Contig177736/0/Contig177736.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177736.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/09/06/Contig177736//theVoid.Contig177736/0/Contig177736.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177736.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/09/06/Contig177736//theVoid.Contig177736/0/Contig177736.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177736.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/09/06/Contig177736//theVoid.Contig177736/0/Contig177736.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177736.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/09/06/Contig177736//theVoid.Contig177736/0/Contig177736.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/comp43168_c1_seq1.for.1154-2086.0.fasta -t /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177736.1154-2086.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177736.1154-2086.comp43168_c1_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/comp43168_c1_seq31.for.1192-2086.0.fasta -t /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177736.1192-2086.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177736.1192-2086.comp43168_c1_seq31.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/comp43168_c1_seq32.for.1192-2086.0.fasta -t /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177736.1192-2086.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177736.1192-2086.comp43168_c1_seq32.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/comp43168_c1_seq22.for.1192-2086.0.fasta -t /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177736.1192-2086.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177736.1192-2086.comp43168_c1_seq22.e.exonerate #-------------------------------# cleaning blastn... flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177736.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/09/06/Contig177736//theVoid.Contig177736/0/Contig177736.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177736.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/09/06/Contig177736//theVoid.Contig177736/0/Contig177736.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177736.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/09/06/Contig177736//theVoid.Contig177736/0/Contig177736.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177736.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/09/06/Contig177736//theVoid.Contig177736/0/Contig177736.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177736.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/09/06/Contig177736//theVoid.Contig177736/0/Contig177736.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177736.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/09/06/Contig177736//theVoid.Contig177736/0/Contig177736.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177736.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/09/06/Contig177736//theVoid.Contig177736/0/Contig177736.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177736.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/09/06/Contig177736//theVoid.Contig177736/0/Contig177736.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177736.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/09/06/Contig177736//theVoid.Contig177736/0/Contig177736.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177736.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/09/06/Contig177736//theVoid.Contig177736/0/Contig177736.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig177737 Length: 1109 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/48/C0/Contig177737//theVoid.Contig177737/0/Contig177737.0.all.rb -species all -dir /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/48/C0/Contig177737//theVoid.Contig177737/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177737.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/48/C0/Contig177737//theVoid.Contig177737/0/Contig177737.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177737.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/48/C0/Contig177737//theVoid.Contig177737/0/Contig177737.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177737.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/48/C0/Contig177737//theVoid.Contig177737/0/Contig177737.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177737.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/48/C0/Contig177737//theVoid.Contig177737/0/Contig177737.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177737.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/48/C0/Contig177737//theVoid.Contig177737/0/Contig177737.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177737.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/48/C0/Contig177737//theVoid.Contig177737/0/Contig177737.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177737.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/48/C0/Contig177737//theVoid.Contig177737/0/Contig177737.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177737.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/48/C0/Contig177737//theVoid.Contig177737/0/Contig177737.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177737.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/48/C0/Contig177737//theVoid.Contig177737/0/Contig177737.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177737.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/48/C0/Contig177737//theVoid.Contig177737/0/Contig177737.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177737.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/48/C0/Contig177737//theVoid.Contig177737/0/Contig177737.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177737.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/48/C0/Contig177737//theVoid.Contig177737/0/Contig177737.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177737.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/48/C0/Contig177737//theVoid.Contig177737/0/Contig177737.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177737.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/48/C0/Contig177737//theVoid.Contig177737/0/Contig177737.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177737.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/48/C0/Contig177737//theVoid.Contig177737/0/Contig177737.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177737.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/48/C0/Contig177737//theVoid.Contig177737/0/Contig177737.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177737.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/48/C0/Contig177737//theVoid.Contig177737/0/Contig177737.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177737.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/48/C0/Contig177737//theVoid.Contig177737/0/Contig177737.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177737.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/48/C0/Contig177737//theVoid.Contig177737/0/Contig177737.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177737.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/48/C0/Contig177737//theVoid.Contig177737/0/Contig177737.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig177738 Length: 5818 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/A0/45/Contig177738//theVoid.Contig177738/0/Contig177738.0.all.rb -species all -dir /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/A0/45/Contig177738//theVoid.Contig177738/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177738.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/A0/45/Contig177738//theVoid.Contig177738/0/Contig177738.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177738.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/A0/45/Contig177738//theVoid.Contig177738/0/Contig177738.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177738.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/A0/45/Contig177738//theVoid.Contig177738/0/Contig177738.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177738.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/A0/45/Contig177738//theVoid.Contig177738/0/Contig177738.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177738.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/A0/45/Contig177738//theVoid.Contig177738/0/Contig177738.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177738.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/A0/45/Contig177738//theVoid.Contig177738/0/Contig177738.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177738.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/A0/45/Contig177738//theVoid.Contig177738/0/Contig177738.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177738.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/A0/45/Contig177738//theVoid.Contig177738/0/Contig177738.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177738.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/A0/45/Contig177738//theVoid.Contig177738/0/Contig177738.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177738.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/A0/45/Contig177738//theVoid.Contig177738/0/Contig177738.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177738.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/A0/45/Contig177738//theVoid.Contig177738/0/Contig177738.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177738.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/A0/45/Contig177738//theVoid.Contig177738/0/Contig177738.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177738.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/A0/45/Contig177738//theVoid.Contig177738/0/Contig177738.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177738.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/A0/45/Contig177738//theVoid.Contig177738/0/Contig177738.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177738.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/A0/45/Contig177738//theVoid.Contig177738/0/Contig177738.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177738.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/A0/45/Contig177738//theVoid.Contig177738/0/Contig177738.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177738.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/A0/45/Contig177738//theVoid.Contig177738/0/Contig177738.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177738.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/A0/45/Contig177738//theVoid.Contig177738/0/Contig177738.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177738.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/A0/45/Contig177738//theVoid.Contig177738/0/Contig177738.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177738.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/A0/45/Contig177738//theVoid.Contig177738/0/Contig177738.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig177743 Length: 2419 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/65/86/Contig177743//theVoid.Contig177743/0/Contig177743.0.all.rb -species all -dir /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/65/86/Contig177743//theVoid.Contig177743/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177743.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/65/86/Contig177743//theVoid.Contig177743/0/Contig177743.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177743.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/65/86/Contig177743//theVoid.Contig177743/0/Contig177743.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177743.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/65/86/Contig177743//theVoid.Contig177743/0/Contig177743.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177743.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/65/86/Contig177743//theVoid.Contig177743/0/Contig177743.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177743.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/65/86/Contig177743//theVoid.Contig177743/0/Contig177743.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177743.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/65/86/Contig177743//theVoid.Contig177743/0/Contig177743.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177743.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/65/86/Contig177743//theVoid.Contig177743/0/Contig177743.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177743.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/65/86/Contig177743//theVoid.Contig177743/0/Contig177743.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177743.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/65/86/Contig177743//theVoid.Contig177743/0/Contig177743.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177743.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/65/86/Contig177743//theVoid.Contig177743/0/Contig177743.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177743.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/65/86/Contig177743//theVoid.Contig177743/0/Contig177743.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177743.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/65/86/Contig177743//theVoid.Contig177743/0/Contig177743.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177743.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/65/86/Contig177743//theVoid.Contig177743/0/Contig177743.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177743.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/65/86/Contig177743//theVoid.Contig177743/0/Contig177743.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177743.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/65/86/Contig177743//theVoid.Contig177743/0/Contig177743.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177743.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/65/86/Contig177743//theVoid.Contig177743/0/Contig177743.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177743.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/65/86/Contig177743//theVoid.Contig177743/0/Contig177743.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177743.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/65/86/Contig177743//theVoid.Contig177743/0/Contig177743.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177743.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/65/86/Contig177743//theVoid.Contig177743/0/Contig177743.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177743.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/65/86/Contig177743//theVoid.Contig177743/0/Contig177743.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig177744 Length: 10924 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/8A/C3/Contig177744//theVoid.Contig177744/0/Contig177744.0.all.rb -species all -dir /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/8A/C3/Contig177744//theVoid.Contig177744/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177744.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/8A/C3/Contig177744//theVoid.Contig177744/0/Contig177744.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177744.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/8A/C3/Contig177744//theVoid.Contig177744/0/Contig177744.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177744.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/8A/C3/Contig177744//theVoid.Contig177744/0/Contig177744.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177744.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/8A/C3/Contig177744//theVoid.Contig177744/0/Contig177744.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177744.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/8A/C3/Contig177744//theVoid.Contig177744/0/Contig177744.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177744.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/8A/C3/Contig177744//theVoid.Contig177744/0/Contig177744.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177744.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/8A/C3/Contig177744//theVoid.Contig177744/0/Contig177744.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177744.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/8A/C3/Contig177744//theVoid.Contig177744/0/Contig177744.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177744.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/8A/C3/Contig177744//theVoid.Contig177744/0/Contig177744.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177744.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/8A/C3/Contig177744//theVoid.Contig177744/0/Contig177744.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:5 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/comp21238_c1_seq1.for.7046-8185.0.fasta -t /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177744.7046-8185.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177744.7046-8185.comp21238_c1_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/comp34005_c0_seq2.for.7661-8860.0.fasta -t /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177744.7661-8860.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177744.7661-8860.comp34005_c0_seq2.e.exonerate #-------------------------------# cleaning blastn... cleaning clusters.... total clusters:2 now processing 0 total clusters:2 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177744.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/8A/C3/Contig177744//theVoid.Contig177744/0/Contig177744.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177744.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/8A/C3/Contig177744//theVoid.Contig177744/0/Contig177744.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177744.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/8A/C3/Contig177744//theVoid.Contig177744/0/Contig177744.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177744.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/8A/C3/Contig177744//theVoid.Contig177744/0/Contig177744.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177744.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/8A/C3/Contig177744//theVoid.Contig177744/0/Contig177744.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177744.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/8A/C3/Contig177744//theVoid.Contig177744/0/Contig177744.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177744.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/8A/C3/Contig177744//theVoid.Contig177744/0/Contig177744.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:3 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177744.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/8A/C3/Contig177744//theVoid.Contig177744/0/Contig177744.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177744.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/8A/C3/Contig177744//theVoid.Contig177744/0/Contig177744.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177744.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/8A/C3/Contig177744//theVoid.Contig177744/0/Contig177744.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:1 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig177750 Length: 2631 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/78/15/Contig177750//theVoid.Contig177750/0/Contig177750.0.all.rb -species all -dir /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/78/15/Contig177750//theVoid.Contig177750/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177750.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/78/15/Contig177750//theVoid.Contig177750/0/Contig177750.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177750.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/78/15/Contig177750//theVoid.Contig177750/0/Contig177750.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177750.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/78/15/Contig177750//theVoid.Contig177750/0/Contig177750.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177750.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/78/15/Contig177750//theVoid.Contig177750/0/Contig177750.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177750.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/78/15/Contig177750//theVoid.Contig177750/0/Contig177750.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177750.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/78/15/Contig177750//theVoid.Contig177750/0/Contig177750.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177750.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/78/15/Contig177750//theVoid.Contig177750/0/Contig177750.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177750.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/78/15/Contig177750//theVoid.Contig177750/0/Contig177750.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177750.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/78/15/Contig177750//theVoid.Contig177750/0/Contig177750.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177750.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/78/15/Contig177750//theVoid.Contig177750/0/Contig177750.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/comp45147_c0_seq1.for.85-2519.0.fasta -t /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177750.85-2519.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177750.85-2519.comp45147_c0_seq1.e.exonerate #-------------------------------# cleaning blastn... flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177750.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/78/15/Contig177750//theVoid.Contig177750/0/Contig177750.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177750.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/78/15/Contig177750//theVoid.Contig177750/0/Contig177750.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177750.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/78/15/Contig177750//theVoid.Contig177750/0/Contig177750.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177750.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/78/15/Contig177750//theVoid.Contig177750/0/Contig177750.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177750.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/78/15/Contig177750//theVoid.Contig177750/0/Contig177750.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177750.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/78/15/Contig177750//theVoid.Contig177750/0/Contig177750.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177750.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/78/15/Contig177750//theVoid.Contig177750/0/Contig177750.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177750.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/78/15/Contig177750//theVoid.Contig177750/0/Contig177750.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177750.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/78/15/Contig177750//theVoid.Contig177750/0/Contig177750.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177750.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/78/15/Contig177750//theVoid.Contig177750/0/Contig177750.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/XP_022314224%2E1.for.185-2520.0.fasta -t /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177750.185-2520.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177750.185-2520.XP_022314224%2E1.p.exonerate #-------------------------------# cleaning blastx... cleaning clusters.... total clusters:1 now processing 0 cleaning clusters.... total clusters:1 now processing 0 flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig177751 Length: 5144 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/1B/51/Contig177751//theVoid.Contig177751/0/Contig177751.0.all.rb -species all -dir /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/1B/51/Contig177751//theVoid.Contig177751/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177751.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/1B/51/Contig177751//theVoid.Contig177751/0/Contig177751.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177751.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/1B/51/Contig177751//theVoid.Contig177751/0/Contig177751.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177751.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/1B/51/Contig177751//theVoid.Contig177751/0/Contig177751.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177751.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/1B/51/Contig177751//theVoid.Contig177751/0/Contig177751.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177751.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/1B/51/Contig177751//theVoid.Contig177751/0/Contig177751.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177751.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/1B/51/Contig177751//theVoid.Contig177751/0/Contig177751.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177751.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/1B/51/Contig177751//theVoid.Contig177751/0/Contig177751.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177751.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/1B/51/Contig177751//theVoid.Contig177751/0/Contig177751.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177751.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/1B/51/Contig177751//theVoid.Contig177751/0/Contig177751.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177751.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/1B/51/Contig177751//theVoid.Contig177751/0/Contig177751.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/comp44287_c0_seq19.for.1-647.0.fasta -t /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177751.1-647.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177751.1-647.comp44287_c0_seq19.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/comp44287_c0_seq3.for.1-647.0.fasta -t /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177751.1-647.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177751.1-647.comp44287_c0_seq3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/comp44287_c0_seq13.for.1-647.0.fasta -t /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177751.1-647.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177751.1-647.comp44287_c0_seq13.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:2 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:2 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177751.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/1B/51/Contig177751//theVoid.Contig177751/0/Contig177751.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177751.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/1B/51/Contig177751//theVoid.Contig177751/0/Contig177751.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177751.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/1B/51/Contig177751//theVoid.Contig177751/0/Contig177751.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177751.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/1B/51/Contig177751//theVoid.Contig177751/0/Contig177751.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177751.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/1B/51/Contig177751//theVoid.Contig177751/0/Contig177751.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177751.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/1B/51/Contig177751//theVoid.Contig177751/0/Contig177751.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177751.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/1B/51/Contig177751//theVoid.Contig177751/0/Contig177751.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177751.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/1B/51/Contig177751//theVoid.Contig177751/0/Contig177751.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177751.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/1B/51/Contig177751//theVoid.Contig177751/0/Contig177751.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177751.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/1B/51/Contig177751//theVoid.Contig177751/0/Contig177751.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig177752 Length: 1038 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/D3/2C/Contig177752//theVoid.Contig177752/0/Contig177752.0.all.rb -species all -dir /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/D3/2C/Contig177752//theVoid.Contig177752/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177752.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/D3/2C/Contig177752//theVoid.Contig177752/0/Contig177752.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177752.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/D3/2C/Contig177752//theVoid.Contig177752/0/Contig177752.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177752.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/D3/2C/Contig177752//theVoid.Contig177752/0/Contig177752.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177752.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/D3/2C/Contig177752//theVoid.Contig177752/0/Contig177752.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177752.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/D3/2C/Contig177752//theVoid.Contig177752/0/Contig177752.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177752.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/D3/2C/Contig177752//theVoid.Contig177752/0/Contig177752.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177752.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/D3/2C/Contig177752//theVoid.Contig177752/0/Contig177752.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177752.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/D3/2C/Contig177752//theVoid.Contig177752/0/Contig177752.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177752.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/D3/2C/Contig177752//theVoid.Contig177752/0/Contig177752.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177752.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/D3/2C/Contig177752//theVoid.Contig177752/0/Contig177752.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:4 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177752.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/D3/2C/Contig177752//theVoid.Contig177752/0/Contig177752.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177752.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/D3/2C/Contig177752//theVoid.Contig177752/0/Contig177752.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177752.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/D3/2C/Contig177752//theVoid.Contig177752/0/Contig177752.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177752.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/D3/2C/Contig177752//theVoid.Contig177752/0/Contig177752.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177752.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/D3/2C/Contig177752//theVoid.Contig177752/0/Contig177752.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177752.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/D3/2C/Contig177752//theVoid.Contig177752/0/Contig177752.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177752.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/D3/2C/Contig177752//theVoid.Contig177752/0/Contig177752.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177752.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/D3/2C/Contig177752//theVoid.Contig177752/0/Contig177752.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177752.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/D3/2C/Contig177752//theVoid.Contig177752/0/Contig177752.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177752.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/D3/2C/Contig177752//theVoid.Contig177752/0/Contig177752.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig177760 Length: 1906 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/AC/F7/Contig177760//theVoid.Contig177760/0/Contig177760.0.all.rb -species all -dir /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/AC/F7/Contig177760//theVoid.Contig177760/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177760.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/AC/F7/Contig177760//theVoid.Contig177760/0/Contig177760.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177760.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/AC/F7/Contig177760//theVoid.Contig177760/0/Contig177760.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177760.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/AC/F7/Contig177760//theVoid.Contig177760/0/Contig177760.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177760.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/AC/F7/Contig177760//theVoid.Contig177760/0/Contig177760.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177760.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/AC/F7/Contig177760//theVoid.Contig177760/0/Contig177760.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177760.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/AC/F7/Contig177760//theVoid.Contig177760/0/Contig177760.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177760.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/AC/F7/Contig177760//theVoid.Contig177760/0/Contig177760.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177760.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/AC/F7/Contig177760//theVoid.Contig177760/0/Contig177760.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177760.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/AC/F7/Contig177760//theVoid.Contig177760/0/Contig177760.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177760.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/AC/F7/Contig177760//theVoid.Contig177760/0/Contig177760.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177760.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/AC/F7/Contig177760//theVoid.Contig177760/0/Contig177760.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177760.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/AC/F7/Contig177760//theVoid.Contig177760/0/Contig177760.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177760.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/AC/F7/Contig177760//theVoid.Contig177760/0/Contig177760.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177760.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/AC/F7/Contig177760//theVoid.Contig177760/0/Contig177760.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177760.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/AC/F7/Contig177760//theVoid.Contig177760/0/Contig177760.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177760.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/AC/F7/Contig177760//theVoid.Contig177760/0/Contig177760.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177760.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/AC/F7/Contig177760//theVoid.Contig177760/0/Contig177760.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177760.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/AC/F7/Contig177760//theVoid.Contig177760/0/Contig177760.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177760.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/AC/F7/Contig177760//theVoid.Contig177760/0/Contig177760.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.44/cctools-temp-t.44.f2f2bm/maker_k4SWq3/0/Contig177760.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.44/Olurida_v081.maker.output/Olurida_v081_datastore/AC/F7/Contig177760//theVoid.Contig177760/0/Contig177760.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output Maker is now finished!!! Start_time: 1533652886 End_time: 1533653204 Elapsed: 318 ================================= Argument "2.53_01" isn't numeric in numeric ge (>=) at /usr/local/lib/x86_64-linux-gnu/perl/5.22.1/forks.pm line 1570. Unknown option: debug_size_limit STATUS: Parsing control files... STATUS: Processing and indexing input FASTA files... STATUS: Setting up database for any GFF3 input... A data structure will be created for you at: /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore To access files for individual sequences use the datastore index: /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_master_datastore_index.log STATUS: Now running MAKER... examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig107451 Length: 1939 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/D8/90/Contig107451//theVoid.Contig107451/0/Contig107451.0.all.rb -species all -dir /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/D8/90/Contig107451//theVoid.Contig107451/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107451.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/D8/90/Contig107451//theVoid.Contig107451/0/Contig107451.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107451.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/D8/90/Contig107451//theVoid.Contig107451/0/Contig107451.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107451.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/D8/90/Contig107451//theVoid.Contig107451/0/Contig107451.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107451.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/D8/90/Contig107451//theVoid.Contig107451/0/Contig107451.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107451.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/D8/90/Contig107451//theVoid.Contig107451/0/Contig107451.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107451.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/D8/90/Contig107451//theVoid.Contig107451/0/Contig107451.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107451.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/D8/90/Contig107451//theVoid.Contig107451/0/Contig107451.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107451.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/D8/90/Contig107451//theVoid.Contig107451/0/Contig107451.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107451.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/D8/90/Contig107451//theVoid.Contig107451/0/Contig107451.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107451.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/D8/90/Contig107451//theVoid.Contig107451/0/Contig107451.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports flattening EST clusters doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107451.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/D8/90/Contig107451//theVoid.Contig107451/0/Contig107451.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107451.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/D8/90/Contig107451//theVoid.Contig107451/0/Contig107451.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107451.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/D8/90/Contig107451//theVoid.Contig107451/0/Contig107451.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107451.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/D8/90/Contig107451//theVoid.Contig107451/0/Contig107451.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107451.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/D8/90/Contig107451//theVoid.Contig107451/0/Contig107451.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107451.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/D8/90/Contig107451//theVoid.Contig107451/0/Contig107451.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107451.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/D8/90/Contig107451//theVoid.Contig107451/0/Contig107451.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107451.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/D8/90/Contig107451//theVoid.Contig107451/0/Contig107451.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107451.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/D8/90/Contig107451//theVoid.Contig107451/0/Contig107451.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107451.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/D8/90/Contig107451//theVoid.Contig107451/0/Contig107451.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig107452 Length: 2574 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/58/82/Contig107452//theVoid.Contig107452/0/Contig107452.0.all.rb -species all -dir /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/58/82/Contig107452//theVoid.Contig107452/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107452.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/58/82/Contig107452//theVoid.Contig107452/0/Contig107452.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107452.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/58/82/Contig107452//theVoid.Contig107452/0/Contig107452.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107452.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/58/82/Contig107452//theVoid.Contig107452/0/Contig107452.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107452.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/58/82/Contig107452//theVoid.Contig107452/0/Contig107452.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107452.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/58/82/Contig107452//theVoid.Contig107452/0/Contig107452.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107452.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/58/82/Contig107452//theVoid.Contig107452/0/Contig107452.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107452.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/58/82/Contig107452//theVoid.Contig107452/0/Contig107452.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107452.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/58/82/Contig107452//theVoid.Contig107452/0/Contig107452.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107452.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/58/82/Contig107452//theVoid.Contig107452/0/Contig107452.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107452.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/58/82/Contig107452//theVoid.Contig107452/0/Contig107452.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107452.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/58/82/Contig107452//theVoid.Contig107452/0/Contig107452.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107452.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/58/82/Contig107452//theVoid.Contig107452/0/Contig107452.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107452.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/58/82/Contig107452//theVoid.Contig107452/0/Contig107452.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107452.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/58/82/Contig107452//theVoid.Contig107452/0/Contig107452.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107452.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/58/82/Contig107452//theVoid.Contig107452/0/Contig107452.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107452.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/58/82/Contig107452//theVoid.Contig107452/0/Contig107452.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107452.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/58/82/Contig107452//theVoid.Contig107452/0/Contig107452.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107452.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/58/82/Contig107452//theVoid.Contig107452/0/Contig107452.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107452.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/58/82/Contig107452//theVoid.Contig107452/0/Contig107452.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107452.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/58/82/Contig107452//theVoid.Contig107452/0/Contig107452.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig107453 Length: 1832 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/B4/72/Contig107453//theVoid.Contig107453/0/Contig107453.0.all.rb -species all -dir /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/B4/72/Contig107453//theVoid.Contig107453/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107453.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/B4/72/Contig107453//theVoid.Contig107453/0/Contig107453.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107453.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/B4/72/Contig107453//theVoid.Contig107453/0/Contig107453.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107453.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/B4/72/Contig107453//theVoid.Contig107453/0/Contig107453.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107453.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/B4/72/Contig107453//theVoid.Contig107453/0/Contig107453.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107453.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/B4/72/Contig107453//theVoid.Contig107453/0/Contig107453.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107453.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/B4/72/Contig107453//theVoid.Contig107453/0/Contig107453.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107453.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/B4/72/Contig107453//theVoid.Contig107453/0/Contig107453.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107453.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/B4/72/Contig107453//theVoid.Contig107453/0/Contig107453.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107453.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/B4/72/Contig107453//theVoid.Contig107453/0/Contig107453.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107453.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/B4/72/Contig107453//theVoid.Contig107453/0/Contig107453.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107453.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/B4/72/Contig107453//theVoid.Contig107453/0/Contig107453.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107453.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/B4/72/Contig107453//theVoid.Contig107453/0/Contig107453.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107453.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/B4/72/Contig107453//theVoid.Contig107453/0/Contig107453.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107453.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/B4/72/Contig107453//theVoid.Contig107453/0/Contig107453.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107453.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/B4/72/Contig107453//theVoid.Contig107453/0/Contig107453.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107453.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/B4/72/Contig107453//theVoid.Contig107453/0/Contig107453.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107453.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/B4/72/Contig107453//theVoid.Contig107453/0/Contig107453.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107453.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/B4/72/Contig107453//theVoid.Contig107453/0/Contig107453.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107453.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/B4/72/Contig107453//theVoid.Contig107453/0/Contig107453.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107453.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/B4/72/Contig107453//theVoid.Contig107453/0/Contig107453.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig107454 Length: 1523 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/7D/E4/Contig107454//theVoid.Contig107454/0/Contig107454.0.all.rb -species all -dir /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/7D/E4/Contig107454//theVoid.Contig107454/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107454.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/7D/E4/Contig107454//theVoid.Contig107454/0/Contig107454.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107454.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/7D/E4/Contig107454//theVoid.Contig107454/0/Contig107454.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107454.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/7D/E4/Contig107454//theVoid.Contig107454/0/Contig107454.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107454.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/7D/E4/Contig107454//theVoid.Contig107454/0/Contig107454.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107454.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/7D/E4/Contig107454//theVoid.Contig107454/0/Contig107454.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107454.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/7D/E4/Contig107454//theVoid.Contig107454/0/Contig107454.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107454.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/7D/E4/Contig107454//theVoid.Contig107454/0/Contig107454.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107454.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/7D/E4/Contig107454//theVoid.Contig107454/0/Contig107454.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107454.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/7D/E4/Contig107454//theVoid.Contig107454/0/Contig107454.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107454.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/7D/E4/Contig107454//theVoid.Contig107454/0/Contig107454.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107454.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/7D/E4/Contig107454//theVoid.Contig107454/0/Contig107454.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107454.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/7D/E4/Contig107454//theVoid.Contig107454/0/Contig107454.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107454.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/7D/E4/Contig107454//theVoid.Contig107454/0/Contig107454.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107454.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/7D/E4/Contig107454//theVoid.Contig107454/0/Contig107454.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107454.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/7D/E4/Contig107454//theVoid.Contig107454/0/Contig107454.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107454.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/7D/E4/Contig107454//theVoid.Contig107454/0/Contig107454.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107454.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/7D/E4/Contig107454//theVoid.Contig107454/0/Contig107454.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107454.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/7D/E4/Contig107454//theVoid.Contig107454/0/Contig107454.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107454.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/7D/E4/Contig107454//theVoid.Contig107454/0/Contig107454.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107454.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/7D/E4/Contig107454//theVoid.Contig107454/0/Contig107454.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig107455 Length: 3275 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/8B/BE/Contig107455//theVoid.Contig107455/0/Contig107455.0.all.rb -species all -dir /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/8B/BE/Contig107455//theVoid.Contig107455/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107455.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/8B/BE/Contig107455//theVoid.Contig107455/0/Contig107455.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107455.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/8B/BE/Contig107455//theVoid.Contig107455/0/Contig107455.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107455.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/8B/BE/Contig107455//theVoid.Contig107455/0/Contig107455.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107455.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/8B/BE/Contig107455//theVoid.Contig107455/0/Contig107455.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107455.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/8B/BE/Contig107455//theVoid.Contig107455/0/Contig107455.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107455.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/8B/BE/Contig107455//theVoid.Contig107455/0/Contig107455.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107455.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/8B/BE/Contig107455//theVoid.Contig107455/0/Contig107455.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107455.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/8B/BE/Contig107455//theVoid.Contig107455/0/Contig107455.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107455.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/8B/BE/Contig107455//theVoid.Contig107455/0/Contig107455.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107455.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/8B/BE/Contig107455//theVoid.Contig107455/0/Contig107455.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/comp18262_c0_seq1.for.478-1382.0.fasta -t /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107455.478-1382.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107455.478-1382.comp18262_c0_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/comp32980_c0_seq4.for.1752-3275.0.fasta -t /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107455.1752-3275.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107455.1752-3275.comp32980_c0_seq4.e.exonerate #-------------------------------# cleaning blastn... cleaning clusters.... total clusters:1 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107455.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/8B/BE/Contig107455//theVoid.Contig107455/0/Contig107455.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107455.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/8B/BE/Contig107455//theVoid.Contig107455/0/Contig107455.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107455.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/8B/BE/Contig107455//theVoid.Contig107455/0/Contig107455.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107455.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/8B/BE/Contig107455//theVoid.Contig107455/0/Contig107455.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107455.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/8B/BE/Contig107455//theVoid.Contig107455/0/Contig107455.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107455.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/8B/BE/Contig107455//theVoid.Contig107455/0/Contig107455.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107455.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/8B/BE/Contig107455//theVoid.Contig107455/0/Contig107455.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107455.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/8B/BE/Contig107455//theVoid.Contig107455/0/Contig107455.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107455.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/8B/BE/Contig107455//theVoid.Contig107455/0/Contig107455.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107455.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/8B/BE/Contig107455//theVoid.Contig107455/0/Contig107455.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:3 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig107456 Length: 3027 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/A2/8C/Contig107456//theVoid.Contig107456/0/Contig107456.0.all.rb -species all -dir /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/A2/8C/Contig107456//theVoid.Contig107456/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107456.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/A2/8C/Contig107456//theVoid.Contig107456/0/Contig107456.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107456.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/A2/8C/Contig107456//theVoid.Contig107456/0/Contig107456.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107456.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/A2/8C/Contig107456//theVoid.Contig107456/0/Contig107456.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107456.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/A2/8C/Contig107456//theVoid.Contig107456/0/Contig107456.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107456.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/A2/8C/Contig107456//theVoid.Contig107456/0/Contig107456.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107456.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/A2/8C/Contig107456//theVoid.Contig107456/0/Contig107456.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107456.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/A2/8C/Contig107456//theVoid.Contig107456/0/Contig107456.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107456.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/A2/8C/Contig107456//theVoid.Contig107456/0/Contig107456.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107456.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/A2/8C/Contig107456//theVoid.Contig107456/0/Contig107456.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107456.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/A2/8C/Contig107456//theVoid.Contig107456/0/Contig107456.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107456.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/A2/8C/Contig107456//theVoid.Contig107456/0/Contig107456.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107456.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/A2/8C/Contig107456//theVoid.Contig107456/0/Contig107456.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107456.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/A2/8C/Contig107456//theVoid.Contig107456/0/Contig107456.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107456.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/A2/8C/Contig107456//theVoid.Contig107456/0/Contig107456.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107456.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/A2/8C/Contig107456//theVoid.Contig107456/0/Contig107456.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107456.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/A2/8C/Contig107456//theVoid.Contig107456/0/Contig107456.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107456.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/A2/8C/Contig107456//theVoid.Contig107456/0/Contig107456.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107456.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/A2/8C/Contig107456//theVoid.Contig107456/0/Contig107456.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107456.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/A2/8C/Contig107456//theVoid.Contig107456/0/Contig107456.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107456.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/A2/8C/Contig107456//theVoid.Contig107456/0/Contig107456.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig107457 Length: 1578 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/78/60/Contig107457//theVoid.Contig107457/0/Contig107457.0.all.rb -species all -dir /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/78/60/Contig107457//theVoid.Contig107457/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107457.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/78/60/Contig107457//theVoid.Contig107457/0/Contig107457.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107457.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/78/60/Contig107457//theVoid.Contig107457/0/Contig107457.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107457.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/78/60/Contig107457//theVoid.Contig107457/0/Contig107457.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107457.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/78/60/Contig107457//theVoid.Contig107457/0/Contig107457.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107457.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/78/60/Contig107457//theVoid.Contig107457/0/Contig107457.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107457.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/78/60/Contig107457//theVoid.Contig107457/0/Contig107457.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107457.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/78/60/Contig107457//theVoid.Contig107457/0/Contig107457.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107457.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/78/60/Contig107457//theVoid.Contig107457/0/Contig107457.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107457.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/78/60/Contig107457//theVoid.Contig107457/0/Contig107457.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107457.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/78/60/Contig107457//theVoid.Contig107457/0/Contig107457.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107457.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/78/60/Contig107457//theVoid.Contig107457/0/Contig107457.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107457.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/78/60/Contig107457//theVoid.Contig107457/0/Contig107457.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107457.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/78/60/Contig107457//theVoid.Contig107457/0/Contig107457.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107457.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/78/60/Contig107457//theVoid.Contig107457/0/Contig107457.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107457.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/78/60/Contig107457//theVoid.Contig107457/0/Contig107457.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107457.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/78/60/Contig107457//theVoid.Contig107457/0/Contig107457.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107457.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/78/60/Contig107457//theVoid.Contig107457/0/Contig107457.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107457.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/78/60/Contig107457//theVoid.Contig107457/0/Contig107457.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107457.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/78/60/Contig107457//theVoid.Contig107457/0/Contig107457.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107457.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/78/60/Contig107457//theVoid.Contig107457/0/Contig107457.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig107458 Length: 2457 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/90/C5/Contig107458//theVoid.Contig107458/0/Contig107458.0.all.rb -species all -dir /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/90/C5/Contig107458//theVoid.Contig107458/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107458.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/90/C5/Contig107458//theVoid.Contig107458/0/Contig107458.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107458.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/90/C5/Contig107458//theVoid.Contig107458/0/Contig107458.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107458.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/90/C5/Contig107458//theVoid.Contig107458/0/Contig107458.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107458.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/90/C5/Contig107458//theVoid.Contig107458/0/Contig107458.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107458.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/90/C5/Contig107458//theVoid.Contig107458/0/Contig107458.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107458.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/90/C5/Contig107458//theVoid.Contig107458/0/Contig107458.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107458.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/90/C5/Contig107458//theVoid.Contig107458/0/Contig107458.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107458.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/90/C5/Contig107458//theVoid.Contig107458/0/Contig107458.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107458.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/90/C5/Contig107458//theVoid.Contig107458/0/Contig107458.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107458.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/90/C5/Contig107458//theVoid.Contig107458/0/Contig107458.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107458.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/90/C5/Contig107458//theVoid.Contig107458/0/Contig107458.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107458.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/90/C5/Contig107458//theVoid.Contig107458/0/Contig107458.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107458.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/90/C5/Contig107458//theVoid.Contig107458/0/Contig107458.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107458.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/90/C5/Contig107458//theVoid.Contig107458/0/Contig107458.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107458.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/90/C5/Contig107458//theVoid.Contig107458/0/Contig107458.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107458.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/90/C5/Contig107458//theVoid.Contig107458/0/Contig107458.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107458.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/90/C5/Contig107458//theVoid.Contig107458/0/Contig107458.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107458.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/90/C5/Contig107458//theVoid.Contig107458/0/Contig107458.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107458.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/90/C5/Contig107458//theVoid.Contig107458/0/Contig107458.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107458.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/90/C5/Contig107458//theVoid.Contig107458/0/Contig107458.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig107459 Length: 2232 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/7F/CA/Contig107459//theVoid.Contig107459/0/Contig107459.0.all.rb -species all -dir /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/7F/CA/Contig107459//theVoid.Contig107459/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107459.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/7F/CA/Contig107459//theVoid.Contig107459/0/Contig107459.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107459.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/7F/CA/Contig107459//theVoid.Contig107459/0/Contig107459.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107459.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/7F/CA/Contig107459//theVoid.Contig107459/0/Contig107459.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107459.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/7F/CA/Contig107459//theVoid.Contig107459/0/Contig107459.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107459.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/7F/CA/Contig107459//theVoid.Contig107459/0/Contig107459.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107459.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/7F/CA/Contig107459//theVoid.Contig107459/0/Contig107459.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107459.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/7F/CA/Contig107459//theVoid.Contig107459/0/Contig107459.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107459.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/7F/CA/Contig107459//theVoid.Contig107459/0/Contig107459.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107459.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/7F/CA/Contig107459//theVoid.Contig107459/0/Contig107459.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107459.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/7F/CA/Contig107459//theVoid.Contig107459/0/Contig107459.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107459.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/7F/CA/Contig107459//theVoid.Contig107459/0/Contig107459.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107459.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/7F/CA/Contig107459//theVoid.Contig107459/0/Contig107459.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107459.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/7F/CA/Contig107459//theVoid.Contig107459/0/Contig107459.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107459.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/7F/CA/Contig107459//theVoid.Contig107459/0/Contig107459.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107459.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/7F/CA/Contig107459//theVoid.Contig107459/0/Contig107459.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107459.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/7F/CA/Contig107459//theVoid.Contig107459/0/Contig107459.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107459.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/7F/CA/Contig107459//theVoid.Contig107459/0/Contig107459.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107459.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/7F/CA/Contig107459//theVoid.Contig107459/0/Contig107459.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107459.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/7F/CA/Contig107459//theVoid.Contig107459/0/Contig107459.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107459.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/7F/CA/Contig107459//theVoid.Contig107459/0/Contig107459.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig107460 Length: 21055 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/56/61/Contig107460//theVoid.Contig107460/0/Contig107460.0.all.rb -species all -dir /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/56/61/Contig107460//theVoid.Contig107460/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107460.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/56/61/Contig107460//theVoid.Contig107460/0/Contig107460.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:12 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107460.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/56/61/Contig107460//theVoid.Contig107460/0/Contig107460.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:10 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107460.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/56/61/Contig107460//theVoid.Contig107460/0/Contig107460.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:7 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107460.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/56/61/Contig107460//theVoid.Contig107460/0/Contig107460.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:9 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107460.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/56/61/Contig107460//theVoid.Contig107460/0/Contig107460.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:10 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107460.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/56/61/Contig107460//theVoid.Contig107460/0/Contig107460.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:9 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107460.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/56/61/Contig107460//theVoid.Contig107460/0/Contig107460.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107460.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/56/61/Contig107460//theVoid.Contig107460/0/Contig107460.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:8 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107460.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/56/61/Contig107460//theVoid.Contig107460/0/Contig107460.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:9 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107460.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/56/61/Contig107460//theVoid.Contig107460/0/Contig107460.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:7 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/comp11862_c1_seq1.for.10608-11623.0.fasta -t /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107460.10608-11623.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107460.10608-11623.comp11862_c1_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/comp27981_c1_seq1.for.7409-10782.0.fasta -t /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107460.7409-10782.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107460.7409-10782.comp27981_c1_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/comp21988_c0_seq1.for.11208-12288.0.fasta -t /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107460.11208-12288.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107460.11208-12288.comp21988_c0_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/comp43234_c1_seq20.for.16619-17529.0.fasta -t /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107460.16619-17529.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107460.16619-17529.comp43234_c1_seq20.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/comp36570_c0_seq1.for.13137-16400.0.fasta -t /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107460.13137-16400.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107460.13137-16400.comp36570_c0_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/comp36570_c0_seq2.for.13137-16389.0.fasta -t /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107460.13137-16389.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107460.13137-16389.comp36570_c0_seq2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/comp36570_c0_seq3.for.13930-16389.0.fasta -t /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107460.13930-16389.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107460.13930-16389.comp36570_c0_seq3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/comp36570_c0_seq4.for.13930-16400.0.fasta -t /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107460.13930-16400.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107460.13930-16400.comp36570_c0_seq4.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/comp30225_c0_seq1.for.4602-6208.0.fasta -t /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107460.4602-6208.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107460.4602-6208.comp30225_c0_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/comp31921_c1_seq1.for.5502-6755.0.fasta -t /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107460.5502-6755.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107460.5502-6755.comp31921_c1_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/comp36559_c0_seq1.for.8842-19505.0.fasta -t /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107460.8842-19505.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107460.8842-19505.comp36559_c0_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/comp31921_c3_seq1.for.7570-10411.0.fasta -t /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107460.7570-10411.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107460.7570-10411.comp31921_c3_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/comp30225_c1_seq1.for.4240-5342.0.fasta -t /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107460.4240-5342.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107460.4240-5342.comp30225_c1_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/comp36559_c0_seq2.for.1-19505.0.fasta -t /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107460.1-19505.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107460.1-19505.comp36559_c0_seq2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/comp41061_c0_seq2.for.11015-13794.0.fasta -t /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107460.11015-13794.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107460.11015-13794.comp41061_c0_seq2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/comp30225_c2_seq1.for.3536-4845.0.fasta -t /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107460.3536-4845.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107460.3536-4845.comp30225_c2_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/comp36559_c0_seq3.for.16284-19505.0.fasta -t /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107460.16284-19505.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107460.16284-19505.comp36559_c0_seq3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/comp41061_c0_seq3.for.11793-13794.0.fasta -t /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107460.11793-13794.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107460.11793-13794.comp41061_c0_seq3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/comp11862_c0_seq1.for.10337-11397.0.fasta -t /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107460.10337-11397.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107460.10337-11397.comp11862_c0_seq1.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:5 now processing 0 ...processing 0 of 14 ...processing 1 of 14 ...processing 2 of 14 ...processing 3 of 14 ...processing 4 of 14 ...processing 5 of 14 ...processing 6 of 14 ...processing 7 of 14 ...processing 8 of 14 ...processing 9 of 14 ...processing 10 of 14 ...processing 11 of 14 ...processing 12 of 14 ...processing 13 of 14 total clusters:5 now processing 0 total clusters:5 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:5 now processing 0 total clusters:5 now processing 0 ...processing 0 of 2 ...processing 1 of 2 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107460.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/56/61/Contig107460//theVoid.Contig107460/0/Contig107460.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107460.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/56/61/Contig107460//theVoid.Contig107460/0/Contig107460.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107460.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/56/61/Contig107460//theVoid.Contig107460/0/Contig107460.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107460.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/56/61/Contig107460//theVoid.Contig107460/0/Contig107460.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107460.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/56/61/Contig107460//theVoid.Contig107460/0/Contig107460.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107460.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/56/61/Contig107460//theVoid.Contig107460/0/Contig107460.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107460.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/56/61/Contig107460//theVoid.Contig107460/0/Contig107460.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107460.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/56/61/Contig107460//theVoid.Contig107460/0/Contig107460.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107460.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/56/61/Contig107460//theVoid.Contig107460/0/Contig107460.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107460.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-22124/t.49/Olurida_v081.maker.output/Olurida_v081_datastore/56/61/Contig107460//theVoid.Contig107460/0/Contig107460.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/EKC38970%2E1.for.11527-12508.0.fasta -t /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107460.11527-12508.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-22124/t.49/cctools-temp-t.49.hQTCL5/maker_QOUWwq/0/Contig107460.11527-12508.EKC38970%2E1.p.exonerate #-------------------------------# cleaning blastx... cleaning clusters.... total clusters:1 now processing 0 cleaning clusters.... total clusters:1 now processing 0 flattening protein clusters prepare section files processing the chunk divide processing contig output Maker is now finished!!! Start_time: 1533652886 End_time: 1533653205 Elapsed: 319 ================================= Argument "2.53_01" isn't numeric in numeric ge (>=) at /usr/local/lib/x86_64-linux-gnu/perl/5.22.1/forks.pm line 1570. Unknown option: debug_size_limit STATUS: Parsing control files... STATUS: Processing and indexing input FASTA files... STATUS: Setting up database for any GFF3 input... A data structure will be created for you at: /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore To access files for individual sequences use the datastore index: /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_master_datastore_index.log STATUS: Now running MAKER... examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig130992 Length: 9755 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/46/87/Contig130992//theVoid.Contig130992/0/Contig130992.0.all.rb -species all -dir /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/46/87/Contig130992//theVoid.Contig130992/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130992.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/46/87/Contig130992//theVoid.Contig130992/0/Contig130992.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130992.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/46/87/Contig130992//theVoid.Contig130992/0/Contig130992.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130992.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/46/87/Contig130992//theVoid.Contig130992/0/Contig130992.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130992.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/46/87/Contig130992//theVoid.Contig130992/0/Contig130992.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130992.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/46/87/Contig130992//theVoid.Contig130992/0/Contig130992.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130992.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/46/87/Contig130992//theVoid.Contig130992/0/Contig130992.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130992.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/46/87/Contig130992//theVoid.Contig130992/0/Contig130992.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130992.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/46/87/Contig130992//theVoid.Contig130992/0/Contig130992.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130992.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/46/87/Contig130992//theVoid.Contig130992/0/Contig130992.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130992.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/46/87/Contig130992//theVoid.Contig130992/0/Contig130992.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:10 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/comp2035_c0_seq1.for.1282-2269.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130992.1282-2269.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130992.1282-2269.comp2035_c0_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/comp13237_c0_seq1.for.1649-2689.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130992.1649-2689.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130992.1649-2689.comp13237_c0_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/comp41566_c0_seq1.for.2137-3741.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130992.2137-3741.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130992.2137-3741.comp41566_c0_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/comp41566_c0_seq2.for.2137-3741.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130992.2137-3741.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130992.2137-3741.comp41566_c0_seq2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/comp33799_c0_seq1.for.6350-7252.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130992.6350-7252.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130992.6350-7252.comp33799_c0_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/comp42457_c0_seq1.for.7592-8976.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130992.7592-8976.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130992.7592-8976.comp42457_c0_seq1.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:4 now processing 0 total clusters:4 now processing 0 total clusters:4 now processing 0 total clusters:4 now processing 0 flattening EST clusters doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130992.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/46/87/Contig130992//theVoid.Contig130992/0/Contig130992.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130992.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/46/87/Contig130992//theVoid.Contig130992/0/Contig130992.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130992.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/46/87/Contig130992//theVoid.Contig130992/0/Contig130992.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130992.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/46/87/Contig130992//theVoid.Contig130992/0/Contig130992.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130992.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/46/87/Contig130992//theVoid.Contig130992/0/Contig130992.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130992.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/46/87/Contig130992//theVoid.Contig130992/0/Contig130992.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130992.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/46/87/Contig130992//theVoid.Contig130992/0/Contig130992.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130992.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/46/87/Contig130992//theVoid.Contig130992/0/Contig130992.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130992.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/46/87/Contig130992//theVoid.Contig130992/0/Contig130992.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130992.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/46/87/Contig130992//theVoid.Contig130992/0/Contig130992.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig130993 Length: 10858 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/0C/BB/Contig130993//theVoid.Contig130993/0/Contig130993.0.all.rb -species all -dir /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/0C/BB/Contig130993//theVoid.Contig130993/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/0C/BB/Contig130993//theVoid.Contig130993/0/Contig130993.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/0C/BB/Contig130993//theVoid.Contig130993/0/Contig130993.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/0C/BB/Contig130993//theVoid.Contig130993/0/Contig130993.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/0C/BB/Contig130993//theVoid.Contig130993/0/Contig130993.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/0C/BB/Contig130993//theVoid.Contig130993/0/Contig130993.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/0C/BB/Contig130993//theVoid.Contig130993/0/Contig130993.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/0C/BB/Contig130993//theVoid.Contig130993/0/Contig130993.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/0C/BB/Contig130993//theVoid.Contig130993/0/Contig130993.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/0C/BB/Contig130993//theVoid.Contig130993/0/Contig130993.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/0C/BB/Contig130993//theVoid.Contig130993/0/Contig130993.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/comp20686_c0_seq1.for.6202-7215.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6202-7215.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6202-7215.comp20686_c0_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/comp20196_c0_seq1.for.6277-7222.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6277-7222.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6277-7222.comp20196_c0_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/comp39641_c0_seq5.for.6752-7698.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6752-7698.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6752-7698.comp39641_c0_seq5.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/comp39641_c0_seq6.for.6775-7698.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6775-7698.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6775-7698.comp39641_c0_seq6.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/comp38602_c0_seq2.for.6904-7929.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6904-7929.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6904-7929.comp38602_c0_seq2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/comp33693_c0_seq3.for.7591-8614.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7591-8614.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7591-8614.comp33693_c0_seq3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/comp43208_c0_seq9.for.7314-8453.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7314-8453.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7314-8453.comp43208_c0_seq9.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/comp43208_c0_seq5.for.7333-8453.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7333-8453.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7333-8453.comp43208_c0_seq5.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:2 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:2 now processing 0 ...processing 0 of 6 ...processing 1 of 6 ...processing 2 of 6 ...processing 3 of 6 ...processing 4 of 6 ...processing 5 of 6 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/0C/BB/Contig130993//theVoid.Contig130993/0/Contig130993.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:210 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/0C/BB/Contig130993//theVoid.Contig130993/0/Contig130993.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:237 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/0C/BB/Contig130993//theVoid.Contig130993/0/Contig130993.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:230 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/0C/BB/Contig130993//theVoid.Contig130993/0/Contig130993.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:205 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/0C/BB/Contig130993//theVoid.Contig130993/0/Contig130993.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:232 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/0C/BB/Contig130993//theVoid.Contig130993/0/Contig130993.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:197 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/0C/BB/Contig130993//theVoid.Contig130993/0/Contig130993.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:204 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/0C/BB/Contig130993//theVoid.Contig130993/0/Contig130993.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:207 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/0C/BB/Contig130993//theVoid.Contig130993/0/Contig130993.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:211 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/0C/BB/Contig130993//theVoid.Contig130993/0/Contig130993.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:217 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC38969%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.EKC38969%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC24359%2E1.for.5999-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.EKC24359%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC34089%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.EKC34089%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC41919%2E1.for.5972-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5972-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5972-8456.EKC41919%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC34179%2E1.for.5999-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.EKC34179%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC34619%2E1.for.5999-8459.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8459.EKC34619%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022309171%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022309171%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022295771%2E1.for.5999-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.XP_022295771%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022304761%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022304761%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022298081%2E1.for.5999-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.XP_022298081%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022299821%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022299821%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC25099%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.EKC25099%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC21729%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.EKC21729%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC23469%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.EKC23469%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC18789%2E1.for.6032-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6032-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6032-8456.EKC18789%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC39539%2E1.for.6476-8426.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6476-8426.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6476-8426.EKC39539%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC19279%2E1.for.5999-8399.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8399.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8399.EKC19279%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022304521%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022304521%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC27869%2E1.for.6476-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6476-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6476-8456.EKC27869%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC39629%2E1.for.6431-8423.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6431-8423.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6431-8423.EKC39629%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC36539%2E1.for.6335-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8462.EKC36539%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022344461%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022344461%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC17559%2E1.for.6231-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6231-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6231-8462.EKC17559%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022345761%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022345761%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022308571%2E1.for.5999-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.XP_022308571%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022297541%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022297541%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022304711%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022304711%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022296561%2E1.for.5999-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.XP_022296561%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022309161%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022309161%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022305821%2E1.for.5999-8480.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8480.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8480.XP_022305821%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022305361%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022305361%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC26709%2E1.for.6491-8459.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6491-8459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6491-8459.EKC26709%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC36989%2E1.for.6002-8423.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6002-8423.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6002-8423.EKC36989%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022299111%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022299111%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC22139%2E1.for.6231-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6231-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6231-8456.EKC22139%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC24999%2E1.for.6518-8420.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6518-8420.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6518-8420.EKC24999%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022312511%2E1.for.5999-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.XP_022312511%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC18609%2E1.for.6335-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8456.EKC18609%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022316301%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022316301%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC22659%2E1.for.6491-8459.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6491-8459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6491-8459.EKC22659%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022304511%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022304511%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC17689%2E1.for.6434-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6434-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6434-8462.EKC17689%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC20969%2E1.for.6335-8423.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8423.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8423.EKC20969%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC25939%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.EKC25939%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC30949%2E1.for.6676-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6676-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6676-8456.EKC30949%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC30089%2E1.for.6847-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.EKC30089%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022288841%2E1.for.6844-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6844-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6844-8462.XP_022288841%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022330761%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022330761%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022308251%2E1.for.6853-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6853-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6853-8456.XP_022308251%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC23709%2E1.for.6847-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8462.EKC23709%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC26609%2E1.for.6335-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8462.EKC26609%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022308721%2E1.for.6835-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6835-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6835-8456.XP_022308721%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC36369%2E1.for.6847-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.EKC36369%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC25379%2E1.for.6913-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6913-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6913-8456.EKC25379%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC23579%2E1.for.6853-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6853-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6853-8456.EKC23579%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022318531%2E1.for.6841-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6841-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6841-8456.XP_022318531%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022308031%2E1.for.6853-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6853-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6853-8456.XP_022308031%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC31669%2E1.for.6847-8459.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8459.EKC31669%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC30929%2E1.for.6847-8414.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8414.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8414.EKC30929%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022301351%2E1.for.6847-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.XP_022301351%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC26039%2E1.for.6910-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6910-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6910-8456.EKC26039%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC32629%2E1.for.6835-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6835-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6835-8456.EKC32629%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022297031%2E1.for.7195-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7195-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7195-8456.XP_022297031%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022300891%2E1.for.6844-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6844-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6844-8456.XP_022300891%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC25719%2E1.for.7222-8459.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7222-8459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7222-8459.EKC25719%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC38779%2E1.for.7195-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7195-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7195-8456.EKC38779%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC23879%2E1.for.7207-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7207-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7207-8456.EKC23879%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022287131%2E1.for.7195-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7195-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7195-8456.XP_022287131%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC20709%2E1.for.7195-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7195-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7195-8462.EKC20709%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC22829%2E1.for.7195-8423.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7195-8423.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7195-8423.EKC22829%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC42369%2E1.for.7255-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7255-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7255-8462.EKC42369%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022308261%2E1.for.6838-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6838-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6838-8456.XP_022308261%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022316851%2E1.for.6838-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6838-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6838-8456.XP_022316851%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022309201%2E1.for.7222-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7222-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7222-8462.XP_022309201%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022300621%2E1.for.6991-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6991-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6991-8462.XP_022300621%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC21979%2E1.for.7273-8450.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7273-8450.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7273-8450.EKC21979%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC34729%2E1.for.7318-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7318-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7318-8462.EKC34729%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022330721%2E1.for.6335-7901.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-7901.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-7901.XP_022330721%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022336301%2E1.for.6985-8036.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6985-8036.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6985-8036.XP_022336301%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC30749%2E1.for.7507-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7507-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7507-8462.EKC30749%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022308231%2E1.for.6847-7946.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-7946.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-7946.XP_022308231%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022308241%2E1.for.7117-8066.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7117-8066.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7117-8066.XP_022308241%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022296831%2E1.for.6931-8381.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6931-8381.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6931-8381.XP_022296831%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022296711%2E1.for.6838-7835.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6838-7835.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6838-7835.XP_022296711%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022290321%2E1.for.7315-8348.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7315-8348.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7315-8348.XP_022290321%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC34310%2E1.for.5954-8423.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5954-8423.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5954-8423.EKC34310%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC40250%2E1.for.5999-8435.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8435.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8435.EKC40250%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC23880%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.EKC23880%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC20130%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.EKC20130%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC38510%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.EKC38510%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC26710%2E1.for.5999-8423.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8423.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8423.EKC26710%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC24460%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.EKC24460%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC31670%2E1.for.6032-8459.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6032-8459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6032-8459.EKC31670%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC39030%2E1.for.6335-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8456.EKC39030%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC17820%2E1.for.5999-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.EKC17820%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC34540%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.EKC34540%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022297322%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022297322%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC19280%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.EKC19280%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022287652%2E1.for.5999-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.XP_022287652%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022305362%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022305362%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022304712%2E1.for.6210-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6210-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6210-8456.XP_022304712%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC22140%2E1.for.6335-8459.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8459.EKC22140%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC35820%2E1.for.5999-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.EKC35820%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022300032%2E1.for.6207-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6207-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6207-8456.XP_022300032%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022303332%2E1.for.5999-8420.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8420.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8420.XP_022303332%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022299112%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022299112%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022305042%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022305042%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC24720%2E1.for.6491-8459.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6491-8459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6491-8459.EKC24720%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022304512%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022304512%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC33740%2E1.for.6383-8405.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6383-8405.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6383-8405.EKC33740%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC24270%2E1.for.6032-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6032-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6032-8456.EKC24270%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022316362%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022316362%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022309602%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022309602%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022309132%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022309132%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022310222%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022310222%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022300812%2E1.for.6066-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6066-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6066-8456.XP_022300812%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022304492%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022304492%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022309322%2E1.for.5999-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.XP_022309322%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022308212%2E1.for.6216-8384.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6216-8384.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6216-8384.XP_022308212%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC36150%2E1.for.5999-8477.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8477.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8477.EKC36150%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC27730%2E1.for.6497-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6497-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6497-8456.EKC27730%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC18610%2E1.for.6335-8459.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8459.EKC18610%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC27600%2E1.for.6476-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6476-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6476-8462.EKC27600%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022310052%2E1.for.6497-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6497-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6497-8456.XP_022310052%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC17800%2E1.for.6422-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6422-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6422-8462.EKC17800%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022308422%2E1.for.5999-8450.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8450.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8450.XP_022308422%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC22960%2E1.for.6847-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.EKC22960%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC35980%2E1.for.6464-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6464-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6464-8456.EKC35980%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC31930%2E1.for.6847-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.EKC31930%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC36370%2E1.for.6335-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8456.EKC36370%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022304152%2E1.for.6847-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.XP_022304152%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC26010%2E1.for.6365-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6365-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6365-8456.EKC26010%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC35760%2E1.for.5999-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.EKC35760%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC21570%2E1.for.6518-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6518-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6518-8456.EKC21570%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC36990%2E1.for.6853-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6853-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6853-8456.EKC36990%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022298582%2E1.for.6844-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6844-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6844-8456.XP_022298582%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022336302%2E1.for.5999-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.XP_022336302%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022302402%2E1.for.6844-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6844-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6844-8462.XP_022302402%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022289282%2E1.for.6844-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6844-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6844-8462.XP_022289282%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC38140%2E1.for.6347-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6347-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6347-8462.EKC38140%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022288252%2E1.for.6847-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8462.XP_022288252%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC43030%2E1.for.7012-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7012-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7012-8462.EKC43030%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022310092%2E1.for.6853-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6853-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6853-8456.XP_022310092%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC17920%2E1.for.7195-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7195-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7195-8462.EKC17920%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC34430%2E1.for.7195-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7195-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7195-8456.EKC34430%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC40160%2E1.for.6335-8459.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8459.EKC40160%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022286582%2E1.for.7207-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7207-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7207-8456.XP_022286582%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC24210%2E1.for.7144-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7144-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7144-8456.EKC24210%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC25420%2E1.for.7207-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7207-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7207-8462.EKC25420%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC28110%2E1.for.7249-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7249-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7249-8456.EKC28110%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022309822%2E1.for.7195-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7195-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7195-8462.XP_022309822%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC20710%2E1.for.7237-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7237-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7237-8462.EKC20710%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022307852%2E1.for.6844-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6844-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6844-8456.XP_022307852%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC21840%2E1.for.7324-8429.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7324-8429.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7324-8429.EKC21840%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022309202%2E1.for.7222-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7222-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7222-8462.XP_022309202%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC40580%2E1.for.7195-8216.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7195-8216.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7195-8216.EKC40580%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022296742%2E1.for.6835-8450.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6835-8450.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6835-8450.XP_022296742%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022311222%2E1.for.7267-8450.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7267-8450.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7267-8450.XP_022311222%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022300782%2E1.for.6925-8453.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6925-8453.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6925-8453.XP_022300782%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022296882%2E1.for.6889-7901.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6889-7901.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6889-7901.XP_022296882%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC22861%2E1.for.5999-8435.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8435.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8435.EKC22861%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC42721%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.EKC42721%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022299153%2E1.for.5999-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.XP_022299153%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC42631%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.EKC42631%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022299823%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022299823%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC27571%2E1.for.6335-8459.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8459.EKC27571%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022305043%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022305043%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022295773%2E1.for.5999-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.XP_022295773%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC38701%2E1.for.5999-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.EKC38701%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC22921%2E1.for.5999-8423.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8423.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8423.EKC22921%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022324083%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022324083%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC38721%2E1.for.5960-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5960-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5960-8456.EKC38721%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022305323%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022305323%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022296563%2E1.for.5999-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.XP_022296563%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022287653%2E1.for.5999-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.XP_022287653%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC21951%2E1.for.6332-8402.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6332-8402.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6332-8402.EKC21951%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022304493%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022304493%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022304713%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022304713%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022305363%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022305363%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC31731%2E1.for.6335-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8456.EKC31731%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022303333%2E1.for.5999-8435.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8435.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8435.XP_022303333%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC17721%2E1.for.5999-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.EKC17721%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022304503%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022304503%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022299113%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022299113%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC39281%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.EKC39281%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022309163%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022309163%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022304383%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022304383%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022323393%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022323393%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022323383%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022323383%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022309173%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022309173%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022304523%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022304523%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC24721%2E1.for.6476-8459.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6476-8459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6476-8459.EKC24721%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC37291%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.EKC37291%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC35981%2E1.for.6335-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8456.EKC35981%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC22141%2E1.for.6410-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6410-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6410-8456.EKC22141%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022303033%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022303033%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC21721%2E1.for.6335-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8456.EKC21721%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022309323%2E1.for.5999-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.XP_022309323%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022298083%2E1.for.6335-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8456.XP_022298083%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022292803%2E1.for.6455-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6455-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6455-8462.XP_022292803%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022309603%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022309603%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022338613%2E1.for.5972-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5972-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5972-8456.XP_022338613%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC27131%2E1.for.5999-8276.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8276.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8276.EKC27131%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022320423%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022320423%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022310223%2E1.for.6850-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6850-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6850-8456.XP_022310223%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022296973%2E1.for.6838-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6838-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6838-8456.XP_022296973%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022340233%2E1.for.6563-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6563-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6563-8456.XP_022340233%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC27261%2E1.for.6419-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6419-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6419-8456.EKC27261%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022302803%2E1.for.6835-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6835-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6835-8462.XP_022302803%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022304153%2E1.for.6847-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.XP_022304153%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC30811%2E1.for.6829-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6829-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6829-8462.EKC30811%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC36151%2E1.for.6410-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6410-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6410-8462.EKC36151%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC24631%2E1.for.6847-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.EKC24631%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC41481%2E1.for.6371-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6371-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6371-8456.EKC41481%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022302043%2E1.for.6844-8477.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6844-8477.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6844-8477.XP_022302043%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022290093%2E1.for.6431-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6431-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6431-8456.XP_022290093%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC41331%2E1.for.6847-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.EKC41331%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022302403%2E1.for.6844-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6844-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6844-8462.XP_022302403%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC41591%2E1.for.6323-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6323-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6323-8462.EKC41591%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022288663%2E1.for.6865-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6865-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6865-8462.XP_022288663%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022288253%2E1.for.6847-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8462.XP_022288253%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022307963%2E1.for.6847-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8462.XP_022307963%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022305103%2E1.for.6841-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6841-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6841-8462.XP_022305103%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC25121%2E1.for.6964-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6964-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6964-8456.EKC25121%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC37741%2E1.for.6847-8216.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8216.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8216.EKC37741%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022298583%2E1.for.6844-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6844-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6844-8462.XP_022298583%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022316853%2E1.for.7084-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7084-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7084-8462.XP_022316853%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC27701%2E1.for.7135-8480.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7135-8480.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7135-8480.EKC27701%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC33741%2E1.for.7099-8453.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7099-8453.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7099-8453.EKC33741%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC24811%2E1.for.7195-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7195-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7195-8462.EKC24811%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022301183%2E1.for.6844-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6844-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6844-8456.XP_022301183%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022336043%2E1.for.6847-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8462.XP_022336043%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022310093%2E1.for.6853-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6853-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6853-8456.XP_022310093%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022308263%2E1.for.6521-8075.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6521-8075.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6521-8075.XP_022308263%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC31831%2E1.for.7207-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7207-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7207-8456.EKC31831%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022295003%2E1.for.6997-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6997-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6997-8456.XP_022295003%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022307593%2E1.for.6853-8078.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6853-8078.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6853-8078.XP_022307593%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC27471%2E1.for.6847-8084.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8084.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8084.EKC27471%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC40581%2E1.for.6476-7922.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6476-7922.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6476-7922.EKC40581%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC26921%2E1.for.7279-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7279-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7279-8456.EKC26921%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC23731%2E1.for.7045-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7045-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7045-8462.EKC23731%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022336263%2E1.for.6847-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8462.XP_022336263%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022296903%2E1.for.6838-7976.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6838-7976.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6838-7976.XP_022296903%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022296893%2E1.for.6853-7943.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6853-7943.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6853-7943.XP_022296893%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC25231%2E1.for.7204-8348.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7204-8348.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7204-8348.EKC25231%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022310053%2E1.for.7273-8429.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7273-8429.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7273-8429.XP_022310053%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC27582%2E1.for.5999-8369.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8369.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8369.EKC27582%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022299234%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022299234%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC23702%2E1.for.5999-8459.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8459.EKC23702%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022299824%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022299824%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022305044%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022305044%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC27842%2E1.for.6335-8459.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8459.EKC27842%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022296564%2E1.for.5999-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.XP_022296564%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC41482%2E1.for.5999-8459.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8459.EKC41482%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC42572%2E1.for.5999-8450.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8450.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8450.EKC42572%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022304714%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022304714%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022309604%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022309604%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022296354%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022296354%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC31532%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.EKC31532%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022304494%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022304494%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022310064%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022310064%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022309164%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022309164%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022304504%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022304504%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022299114%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022299114%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022344424%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022344424%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC37972%2E1.for.6335-8417.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8417.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8417.EKC37972%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022303034%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022303034%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022309174%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022309174%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022304524%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022304524%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022305054%2E1.for.6521-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6521-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6521-8456.XP_022305054%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022333184%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022333184%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC29322%2E1.for.6446-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6446-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6446-8456.EKC29322%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022334074%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022334074%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022300424%2E1.for.6377-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6377-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6377-8462.XP_022300424%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC19342%2E1.for.6847-8453.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8453.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8453.EKC19342%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC31682%2E1.for.6356-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6356-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6356-8462.EKC31682%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022309324%2E1.for.5999-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.XP_022309324%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022318604%2E1.for.6335-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8456.XP_022318604%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC20622%2E1.for.6467-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6467-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6467-8456.EKC20622%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC20712%2E1.for.6335-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8462.EKC20712%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC32932%2E1.for.6491-8360.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6491-8360.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6491-8360.EKC32932%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022298984%2E1.for.6446-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6446-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6446-8462.XP_022298984%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC17222%2E1.for.6335-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8456.EKC17222%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022308294%2E1.for.5999-8402.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8402.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8402.XP_022308294%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022301374%2E1.for.6377-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6377-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6377-8462.XP_022301374%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022310494%2E1.for.6410-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6410-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6410-8456.XP_022310494%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC27572%2E1.for.6410-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6410-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6410-8456.EKC27572%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC27132%2E1.for.6410-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6410-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6410-8456.EKC27132%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022304154%2E1.for.6847-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.XP_022304154%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC17912%2E1.for.6844-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6844-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6844-8456.EKC17912%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022338724%2E1.for.6847-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.XP_022338724%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC25162%2E1.for.6002-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6002-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6002-8462.EKC25162%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022289154%2E1.for.6410-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6410-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6410-8456.XP_022289154%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC22342%2E1.for.5999-8429.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8429.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8429.EKC22342%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022309514%2E1.for.6814-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6814-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6814-8462.XP_022309514%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC27602%2E1.for.6937-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6937-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6937-8462.EKC27602%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022308984%2E1.for.6216-8423.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6216-8423.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6216-8423.XP_022308984%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022309804%2E1.for.6847-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8462.XP_022309804%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022338494%2E1.for.6335-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8462.XP_022338494%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022345424%2E1.for.6985-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6985-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6985-8462.XP_022345424%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC25022%2E1.for.6862-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6862-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6862-8456.EKC25022%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022305324%2E1.for.6847-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.XP_022305324%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC25772%2E1.for.6991-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6991-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6991-8462.EKC25772%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022312044%2E1.for.6446-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6446-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6446-8456.XP_022312044%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022300794%2E1.for.6844-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6844-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6844-8456.XP_022300794%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC28632%2E1.for.7099-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7099-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7099-8456.EKC28632%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022297954%2E1.for.6853-8459.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6853-8459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6853-8459.XP_022297954%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022300634%2E1.for.6844-8258.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6844-8258.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6844-8258.XP_022300634%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022308234%2E1.for.7075-8432.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7075-8432.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7075-8432.XP_022308234%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC32852%2E1.for.7195-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7195-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7195-8456.EKC32852%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC41502%2E1.for.7216-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7216-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7216-8456.EKC41502%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC24802%2E1.for.7207-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7207-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7207-8456.EKC24802%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022316884%2E1.for.6964-8210.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6964-8210.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6964-8210.XP_022316884%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC41302%2E1.for.7171-8453.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7171-8453.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7171-8453.EKC41302%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022336284%2E1.for.7195-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7195-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7195-8462.XP_022336284%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC38432%2E1.for.7234-8459.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7234-8459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7234-8459.EKC38432%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC26732%2E1.for.6419-8399.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6419-8399.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6419-8399.EKC26732%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC19282%2E1.for.6847-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.EKC19282%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022307954%2E1.for.7186-8435.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7186-8435.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7186-8435.XP_022307954%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC23882%2E1.for.7348-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7348-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7348-8456.EKC23882%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC34352%2E1.for.7117-8261.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7117-8261.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7117-8261.EKC34352%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022340414%2E1.for.7045-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7045-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7045-8462.XP_022340414%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC27472%2E1.for.7195-8336.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7195-8336.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7195-8336.EKC27472%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022312284%2E1.for.7255-8414.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7255-8414.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7255-8414.XP_022312284%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC34592%2E1.for.7222-8348.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7222-8348.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7222-8348.EKC34592%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC23582%2E1.for.7099-8108.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7099-8108.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7099-8108.EKC23582%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC26213%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.EKC26213%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC31853%2E1.for.5999-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.EKC31853%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC17683%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.EKC17683%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC38703%2E1.for.6335-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8456.EKC38703%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC22133%2E1.for.5999-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.EKC22133%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC27583%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.EKC27583%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC27643%2E1.for.6032-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6032-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6032-8456.EKC27643%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC23463%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.EKC23463%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022297455%2E1.for.5999-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.XP_022297455%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022300495%2E1.for.5999-8459.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8459.XP_022300495%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022297155%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022297155%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022304715%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022304715%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC24163%2E1.for.6335-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8456.EKC24163%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC35003%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.EKC35003%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022299235%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022299235%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022288875%2E1.for.5999-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.XP_022288875%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022309605%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022309605%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC21403%2E1.for.6410-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6410-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6410-8456.EKC21403%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC23253%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.EKC23253%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC31283%2E1.for.6335-8423.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8423.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8423.EKC31283%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022309175%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022309175%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022304525%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022304525%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022305045%2E1.for.5999-8423.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8423.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8423.XP_022305045%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022309165%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022309165%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022333195%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022333195%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC27573%2E1.for.6383-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6383-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6383-8456.EKC27573%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC34063%2E1.for.6491-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6491-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6491-8456.EKC34063%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022300235%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022300235%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC31463%2E1.for.6383-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6383-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6383-8456.EKC31463%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022304125%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022304125%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022304495%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022304495%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022303265%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022303265%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022304505%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022304505%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022296655%2E1.for.5999-8453.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8453.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8453.XP_022296655%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC37273%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.EKC37273%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022336265%2E1.for.6563-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6563-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6563-8462.XP_022336265%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC20123%2E1.for.6497-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6497-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6497-8456.EKC20123%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC32783%2E1.for.6464-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6464-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6464-8456.EKC32783%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022327045%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022327045%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022304545%2E1.for.6853-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6853-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6853-8456.XP_022304545%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC19283%2E1.for.6847-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.EKC19283%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022304155%2E1.for.6847-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.XP_022304155%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022345065%2E1.for.6838-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6838-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6838-8456.XP_022345065%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC19853%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.EKC19853%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022299115%2E1.for.5999-8453.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8453.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8453.XP_022299115%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022289465%2E1.for.6676-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6676-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6676-8456.XP_022289465%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC34723%2E1.for.6410-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6410-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6410-8456.EKC34723%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC18623%2E1.for.6838-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6838-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6838-8456.EKC18623%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC41483%2E1.for.6838-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6838-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6838-8456.EKC41483%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022307225%2E1.for.6216-8423.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6216-8423.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6216-8423.XP_022307225%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022307495%2E1.for.6838-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6838-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6838-8456.XP_022307495%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022306695%2E1.for.6838-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6838-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6838-8456.XP_022306695%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC34763%2E1.for.6518-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6518-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6518-8456.EKC34763%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC39283%2E1.for.6964-8459.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6964-8459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6964-8459.EKC39283%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC38743%2E1.for.6497-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6497-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6497-8456.EKC38743%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022304295%2E1.for.6464-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6464-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6464-8456.XP_022304295%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022338495%2E1.for.6844-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6844-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6844-8462.XP_022338495%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022305325%2E1.for.6847-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.XP_022305325%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022331905%2E1.for.6844-8420.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6844-8420.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6844-8420.XP_022331905%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022319645%2E1.for.6760-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6760-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6760-8462.XP_022319645%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022296355%2E1.for.6847-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.XP_022296355%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC17223%2E1.for.6446-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6446-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6446-8456.EKC17223%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC27133%2E1.for.6964-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6964-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6964-8456.EKC27133%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022289155%2E1.for.6422-8351.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6422-8351.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6422-8351.XP_022289155%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC41303%2E1.for.6859-8453.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6859-8453.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6859-8453.EKC41303%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC31413%2E1.for.6847-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.EKC31413%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022300805%2E1.for.6407-8348.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6407-8348.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6407-8348.XP_022300805%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC27543%2E1.for.5999-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.EKC27543%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC41543%2E1.for.6964-8423.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6964-8423.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6964-8423.EKC41543%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022322625%2E1.for.7000-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7000-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7000-8456.XP_022322625%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022301955%2E1.for.6784-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6784-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6784-8456.XP_022301955%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC35753%2E1.for.7030-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7030-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7030-8456.EKC35753%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC19793%2E1.for.5999-8459.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8459.EKC19793%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022305615%2E1.for.6847-8156.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8156.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8156.XP_022305615%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022301085%2E1.for.6802-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6802-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6802-8456.XP_022301085%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC38783%2E1.for.7117-8447.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7117-8447.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7117-8447.EKC38783%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC36153%2E1.for.7228-8459.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7228-8459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7228-8459.EKC36153%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022310455%2E1.for.7195-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7195-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7195-8462.XP_022310455%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC22563%2E1.for.7213-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7213-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7213-8462.EKC22563%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022305335%2E1.for.6835-8141.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6835-8141.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6835-8141.XP_022305335%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC24333%2E1.for.7318-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7318-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7318-8462.EKC24333%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022308205%2E1.for.7294-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7294-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7294-8462.XP_022308205%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022296965%2E1.for.6787-8294.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6787-8294.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6787-8294.XP_022296965%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC18613%2E1.for.7333-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7333-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7333-8462.EKC18613%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022312045%2E1.for.7030-8213.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7030-8213.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7030-8213.XP_022312045%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022300955%2E1.for.7213-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7213-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7213-8462.XP_022300955%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC40313%2E1.for.7369-8423.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7369-8423.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7369-8423.EKC40313%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC27903%2E1.for.7222-8348.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7222-8348.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7222-8348.EKC27903%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC31403%2E1.for.7306-8357.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7306-8357.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7306-8357.EKC31403%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022305515%2E1.for.6964-8081.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6964-8081.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6964-8081.XP_022305515%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC17703%2E1.for.6964-7961.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6964-7961.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6964-7961.EKC17703%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC39284%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.EKC39284%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC32094%2E1.for.5999-8459.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8459.EKC32094%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC26614%2E1.for.5975-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5975-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5975-8456.EKC26614%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC22444%2E1.for.6032-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6032-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6032-8456.EKC22444%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC27134%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.EKC27134%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC26564%2E1.for.6032-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6032-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6032-8456.EKC26564%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC22804%2E1.for.5999-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.EKC22804%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC28704%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.EKC28704%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022305046%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022305046%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC36824%2E1.for.5999-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.EKC36824%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC17224%2E1.for.6332-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6332-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6332-8456.EKC17224%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC22954%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.EKC22954%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC35454%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.EKC35454%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022288876%2E1.for.5999-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.XP_022288876%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022297456%2E1.for.5999-8459.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8459.XP_022297456%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022297156%2E1.for.5999-8423.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8423.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8423.XP_022297156%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022308936%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022308936%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022309606%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022309606%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022288446%2E1.for.5999-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.XP_022288446%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022309176%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022309176%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC37734%2E1.for.5999-8423.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8423.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8423.EKC37734%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022288466%2E1.for.5999-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.XP_022288466%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC17504%2E1.for.6032-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6032-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6032-8456.EKC17504%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022336176%2E1.for.5999-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.XP_022336176%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC27604%2E1.for.6431-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6431-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6431-8462.EKC27604%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022310756%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022310756%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022299116%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022299116%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022304526%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022304526%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC25714%2E1.for.5999-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.EKC25714%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC35004%2E1.for.6335-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8456.EKC35004%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC41804%2E1.for.5999-8387.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8387.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8387.EKC41804%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022304506%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022304506%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022309156%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022309156%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022304126%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022304126%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC27434%2E1.for.6476-8459.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6476-8459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6476-8459.EKC27434%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022304516%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022304516%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022310436%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022310436%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022304496%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022304496%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022309166%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022309166%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC33164%2E1.for.6335-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8462.EKC33164%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022303266%2E1.for.5999-8426.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8426.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8426.XP_022303266%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC22274%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.EKC22274%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022296916%2E1.for.5999-8477.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8477.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8477.XP_022296916%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC39664%2E1.for.6434-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6434-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6434-8456.EKC39664%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC28074%2E1.for.6362-8426.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6362-8426.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6362-8426.EKC28074%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC34534%2E1.for.6847-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8462.EKC34534%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022310446%2E1.for.6335-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8456.XP_022310446%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC22134%2E1.for.6476-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6476-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6476-8462.EKC22134%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022318466%2E1.for.6332-8423.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6332-8423.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6332-8423.XP_022318466%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022300496%2E1.for.6850-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6850-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6850-8462.XP_022300496%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC23254%2E1.for.6847-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.EKC23254%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC36844%2E1.for.6719-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6719-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6719-8456.EKC36844%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC37754%2E1.for.6539-8429.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6539-8429.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6539-8429.EKC37754%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC27584%2E1.for.6847-8459.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8459.EKC27584%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC41504%2E1.for.6410-8429.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6410-8429.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6410-8429.EKC41504%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022288826%2E1.for.6733-8426.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6733-8426.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6733-8426.XP_022288826%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022302806%2E1.for.6847-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.XP_022302806%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022304296%2E1.for.6464-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6464-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6464-8456.XP_022304296%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022305616%2E1.for.6847-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.XP_022305616%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC17764%2E1.for.6964-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6964-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6964-8456.EKC17764%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC28054%2E1.for.6383-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6383-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6383-8456.EKC28054%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022305326%2E1.for.6847-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.XP_022305326%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC23114%2E1.for.6964-8429.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6964-8429.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6964-8429.EKC23114%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022290716%2E1.for.6850-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6850-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6850-8456.XP_022290716%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC24714%2E1.for.6302-8261.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6302-8261.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6302-8261.EKC24714%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022304716%2E1.for.6844-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6844-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6844-8462.XP_022304716%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022309736%2E1.for.6847-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.XP_022309736%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC34104%2E1.for.6964-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6964-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6964-8456.EKC34104%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022310916%2E1.for.6446-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6446-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6446-8456.XP_022310916%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022290336%2E1.for.6847-8414.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8414.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8414.XP_022290336%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022336256%2E1.for.6964-8444.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6964-8444.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6964-8444.XP_022336256%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC31914%2E1.for.7195-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7195-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7195-8462.EKC31914%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC29484%2E1.for.6907-8423.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6907-8423.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6907-8423.EKC29484%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC34314%2E1.for.7207-8459.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7207-8459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7207-8459.EKC34314%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022293626%2E1.for.6865-8453.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6865-8453.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6865-8453.XP_022293626%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022307856%2E1.for.7195-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7195-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7195-8456.XP_022307856%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022305336%2E1.for.6835-8141.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6835-8141.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6835-8141.XP_022305336%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC27224%2E1.for.7195-8453.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7195-8453.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7195-8453.EKC27224%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022294916%2E1.for.7027-8417.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7027-8417.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7027-8417.XP_022294916%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022299456%2E1.for.7162-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7162-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7162-8462.XP_022299456%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022331796%2E1.for.7240-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7240-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7240-8462.XP_022331796%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022340416%2E1.for.7042-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7042-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7042-8462.XP_022340416%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC38934%2E1.for.7195-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7195-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7195-8462.EKC38934%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022331736%2E1.for.6719-8015.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6719-8015.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6719-8015.XP_022331736%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022336266%2E1.for.6967-8078.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6967-8078.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6967-8078.XP_022336266%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022312306%2E1.for.7315-8450.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7315-8450.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7315-8450.XP_022312306%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC34964%2E1.for.7144-8357.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7144-8357.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7144-8357.EKC34964%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022322676%2E1.for.6859-7940.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6859-7940.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6859-7940.XP_022322676%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC37834%2E1.for.7312-8249.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7312-8249.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7312-8249.EKC37834%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC34315%2E1.for.5948-8459.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5948-8459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5948-8459.EKC34315%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC27755%2E1.for.5999-8423.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8423.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8423.EKC27755%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC19795%2E1.for.6335-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8456.EKC19795%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC31915%2E1.for.5999-8459.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8459.EKC31915%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC22855%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.EKC22855%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC24445%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.EKC24445%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC34615%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.EKC34615%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC38045%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.EKC38045%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC23255%2E1.for.6332-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6332-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6332-8456.EKC23255%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022336297%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022336297%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022288737%2E1.for.5999-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.XP_022288737%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022305047%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022305047%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC31265%2E1.for.5999-8423.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8423.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8423.EKC31265%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022305807%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022305807%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC27545%2E1.for.6365-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6365-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6365-8462.EKC27545%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022297157%2E1.for.5999-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.XP_022297157%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC21455%2E1.for.6032-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6032-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6032-8462.EKC21455%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022309167%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022309167%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022309177%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022309177%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022289807%2E1.for.5999-8453.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8453.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8453.XP_022289807%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC28495%2E1.for.6410-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6410-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6410-8456.EKC28495%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022309157%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022309157%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022301607%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022301607%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC34725%2E1.for.5999-8423.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8423.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8423.EKC34725%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022310437%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022310437%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC21025%2E1.for.6002-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6002-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6002-8456.EKC21025%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022295177%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022295177%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022304727%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022304727%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022304517%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022304517%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022304497%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022304497%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022299117%2E1.for.5999-8450.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8450.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8450.XP_022299117%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022336267%2E1.for.6395-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6395-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6395-8462.XP_022336267%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022303267%2E1.for.5999-8426.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8426.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8426.XP_022303267%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC33165%2E1.for.6356-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6356-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6356-8462.EKC33165%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022304577%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022304577%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC22275%2E1.for.6335-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8456.EKC22275%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022322627%2E1.for.6335-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8456.XP_022322627%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC34535%2E1.for.6032-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6032-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6032-8456.EKC34535%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022307967%2E1.for.6476-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6476-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6476-8456.XP_022307967%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC38095%2E1.for.6341-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6341-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6341-8462.EKC38095%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC22805%2E1.for.6332-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6332-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6332-8462.EKC22805%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC39535%2E1.for.6473-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6473-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6473-8456.EKC39535%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022308177%2E1.for.6838-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6838-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6838-8456.XP_022308177%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC32785%2E1.for.6332-8450.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6332-8450.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6332-8450.EKC32785%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC21125%2E1.for.6844-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6844-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6844-8456.EKC21125%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC26625%2E1.for.6847-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.EKC26625%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC34865%2E1.for.6856-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6856-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6856-8456.EKC34865%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC37755%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.EKC37755%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022298847%2E1.for.6335-8459.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8459.XP_022298847%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022309597%2E1.for.6410-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6410-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6410-8462.XP_022309597%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022307227%2E1.for.6216-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6216-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6216-8456.XP_022307227%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022314117%2E1.for.5999-8450.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8450.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8450.XP_022314117%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC29485%2E1.for.6847-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.EKC29485%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022302347%2E1.for.6844-8477.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6844-8477.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6844-8477.XP_022302347%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC37195%2E1.for.6620-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6620-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6620-8456.EKC37195%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC26565%2E1.for.6335-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8456.EKC26565%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022305327%2E1.for.6847-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.XP_022305327%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC27235%2E1.for.6410-8426.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6410-8426.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6410-8426.EKC27235%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022290717%2E1.for.6850-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6850-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6850-8456.XP_022290717%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022314247%2E1.for.6335-8429.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8429.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8429.XP_022314247%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022304537%2E1.for.6844-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6844-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6844-8462.XP_022304537%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC34785%2E1.for.6383-8189.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6383-8189.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6383-8189.EKC34785%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022308247%2E1.for.6847-8291.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8291.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8291.XP_022308247%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022300607%2E1.for.7090-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7090-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7090-8462.XP_022300607%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022312357%2E1.for.6216-8213.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6216-8213.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6216-8213.XP_022312357%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022295707%2E1.for.6865-8453.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6865-8453.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6865-8453.XP_022295707%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC35015%2E1.for.7216-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7216-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7216-8456.EKC35015%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC25715%2E1.for.7312-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7312-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7312-8462.EKC25715%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022316827%2E1.for.7324-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7324-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7324-8462.XP_022316827%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC42715%2E1.for.7216-8327.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7216-8327.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7216-8327.EKC42715%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022308127%2E1.for.7195-8297.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7195-8297.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7195-8297.XP_022308127%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022295057%2E1.for.7318-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7318-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7318-8462.XP_022295057%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC26626%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.EKC26626%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC33796%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.EKC33796%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC37756%2E1.for.6335-8426.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8426.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8426.EKC37756%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC26566%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.EKC26566%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC25116%2E1.for.6335-8459.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8459.EKC25116%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC26706%2E1.for.6335-8453.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8453.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8453.EKC26706%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC26616%2E1.for.5999-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.EKC26616%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC30926%2E1.for.6371-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6371-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6371-8456.EKC30926%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022336298%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022336298%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022288738%2E1.for.5999-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.XP_022288738%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022305048%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022305048%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC33986%2E1.for.6347-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6347-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6347-8462.EKC33986%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022288878%2E1.for.5999-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.XP_022288878%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC25876%2E1.for.5999-8450.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8450.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8450.EKC25876%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022305808%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022305808%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022308568%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022308568%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022297158%2E1.for.5999-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.XP_022297158%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC27856%2E1.for.6491-8459.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6491-8459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6491-8459.EKC27856%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022305358%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022305358%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022302408%2E1.for.5999-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.XP_022302408%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022296528%2E1.for.5999-8453.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8453.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8453.XP_022296528%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC17536%2E1.for.5999-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.EKC17536%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022324058%2E1.for.5999-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.XP_022324058%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC33276%2E1.for.6032-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6032-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6032-8456.EKC33276%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022302498%2E1.for.6347-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6347-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6347-8462.XP_022302498%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC34786%2E1.for.6032-8459.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6032-8459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6032-8459.EKC34786%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022336178%2E1.for.5999-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.XP_022336178%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC35386%2E1.for.6491-8459.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6491-8459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6491-8459.EKC35386%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022309158%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022309158%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC43076%2E1.for.5999-8459.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8459.EKC43076%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022342328%2E1.for.5939-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5939-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5939-8462.XP_022342328%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022327028%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022327028%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022333218%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022333218%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC27326%2E1.for.6332-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6332-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6332-8456.EKC27326%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022345768%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022345768%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022304518%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022304518%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022309178%2E1.for.6335-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8456.XP_022309178%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC26606%2E1.for.6335-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8462.EKC26606%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022304498%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022304498%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022300238%2E1.for.5999-8429.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8429.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8429.XP_022300238%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022306698%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022306698%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022305618%2E1.for.6332-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6332-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6332-8456.XP_022305618%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022303268%2E1.for.6335-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8456.XP_022303268%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC23586%2E1.for.6356-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6356-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6356-8456.EKC23586%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022300648%2E1.for.6335-8360.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8360.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8360.XP_022300648%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC24446%2E1.for.6356-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6356-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6356-8456.EKC24446%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022310438%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022310438%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022317018%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022317018%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022317008%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022317008%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022297318%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022297318%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC27866%2E1.for.6964-8459.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6964-8459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6964-8459.EKC27866%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC32986%2E1.for.6844-8423.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6844-8423.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6844-8423.EKC32986%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC35656%2E1.for.6844-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6844-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6844-8462.EKC35656%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022307228%2E1.for.6216-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6216-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6216-8456.XP_022307228%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022319238%2E1.for.6847-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.XP_022319238%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC17776%2E1.for.6844-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6844-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6844-8462.EKC17776%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC42356%2E1.for.5999-8423.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8423.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8423.EKC42356%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC36716%2E1.for.6964-8444.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6964-8444.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6964-8444.EKC36716%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022288828%2E1.for.6676-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6676-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6676-8462.XP_022288828%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC25886%2E1.for.6964-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6964-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6964-8456.EKC25886%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC23056%2E1.for.6883-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6883-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6883-8456.EKC23056%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022305328%2E1.for.6847-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.XP_022305328%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022287638%2E1.for.6847-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.XP_022287638%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022300788%2E1.for.6835-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6835-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6835-8456.XP_022300788%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022308028%2E1.for.6335-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8456.XP_022308028%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC40306%2E1.for.6823-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6823-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6823-8456.EKC40306%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC22326%2E1.for.6964-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6964-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6964-8456.EKC22326%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022290718%2E1.for.6850-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6850-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6850-8456.XP_022290718%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022313938%2E1.for.6865-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6865-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6865-8456.XP_022313938%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022301368%2E1.for.6847-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.XP_022301368%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC30606%2E1.for.7030-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7030-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7030-8462.EKC30606%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC27546%2E1.for.6365-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6365-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6365-8462.EKC27546%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC34866%2E1.for.7069-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7069-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7069-8462.EKC34866%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC27556%2E1.for.7195-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7195-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7195-8462.EKC27556%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022298588%2E1.for.6335-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8456.XP_022298588%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022298828%2E1.for.6994-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6994-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6994-8462.XP_022298828%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022316868%2E1.for.7132-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7132-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7132-8456.XP_022316868%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022312358%2E1.for.6216-8213.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6216-8213.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6216-8213.XP_022312358%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC38046%2E1.for.6964-8207.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6964-8207.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6964-8207.EKC38046%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC28136%2E1.for.7195-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7195-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7195-8456.EKC28136%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022308188%2E1.for.7195-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7195-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7195-8462.XP_022308188%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022290518%2E1.for.6904-8213.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6904-8213.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6904-8213.XP_022290518%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC31686%2E1.for.7195-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7195-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7195-8462.EKC31686%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC36986%2E1.for.7216-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7216-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7216-8462.EKC36986%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC30946%2E1.for.7288-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7288-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7288-8456.EKC30946%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC29056%2E1.for.6335-8426.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8426.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8426.EKC29056%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022307538%2E1.for.7084-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7084-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7084-8462.XP_022307538%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022336258%2E1.for.7195-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7195-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7195-8462.XP_022336258%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022300618%2E1.for.7195-8315.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7195-8315.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7195-8315.XP_022300618%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022338788%2E1.for.7045-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7045-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7045-8462.XP_022338788%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022308318%2E1.for.6853-7994.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6853-7994.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6853-7994.XP_022308318%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022310928%2E1.for.7318-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7318-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7318-8462.XP_022310928%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022309578%2E1.for.7315-8450.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7315-8450.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7315-8450.XP_022309578%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC17446%2E1.for.6844-7976.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6844-7976.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6844-7976.EKC17446%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022290338%2E1.for.7324-8402.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7324-8402.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7324-8402.XP_022290338%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022336228%2E1.for.6985-8216.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6985-8216.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6985-8216.XP_022336228%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC32457%2E1.for.5999-8459.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8459.EKC32457%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC34017%2E1.for.5999-8459.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8459.EKC34017%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC34317%2E1.for.5948-8429.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5948-8429.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5948-8429.EKC34317%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC38557%2E1.for.5966-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5966-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5966-8456.EKC38557%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC22977%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.EKC22977%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC35387%2E1.for.5999-8459.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8459.EKC35387%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC33797%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.EKC33797%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC26617%2E1.for.6032-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6032-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6032-8456.EKC26617%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022295769%2E1.for.5999-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.XP_022295769%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC24357%2E1.for.5999-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.EKC24357%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC36557%2E1.for.6002-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6002-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6002-8456.EKC36557%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022305809%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022305809%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022297459%2E1.for.5999-8459.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8459.XP_022297459%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022304499%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022304499%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022308569%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022308569%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022305039%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022305039%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC42627%2E1.for.6491-8459.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6491-8459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6491-8459.EKC42627%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022304519%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022304519%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC30617%2E1.for.6410-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6410-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6410-8456.EKC30617%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022309169%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022309169%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC38257%2E1.for.6335-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8456.EKC38257%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022336179%2E1.for.5999-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.XP_022336179%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC39367%2E1.for.6332-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6332-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6332-8462.EKC39367%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022304509%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022304509%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC24347%2E1.for.6335-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8456.EKC24347%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC17877%2E1.for.6491-8459.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6491-8459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6491-8459.EKC17877%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022309159%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022309159%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022305049%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022305049%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC41957%2E1.for.6002-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6002-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6002-8456.EKC41957%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022304709%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022304709%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022309179%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022309179%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022303929%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022303929%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022303739%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022303739%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022303909%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022303909%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022304489%2E1.for.5999-8432.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8432.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8432.XP_022304489%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022304529%2E1.for.6216-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6216-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6216-8456.XP_022304529%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022305359%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022305359%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC34177%2E1.for.6356-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6356-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6356-8462.EKC34177%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022299109%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022299109%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC25717%2E1.for.6422-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6422-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6422-8462.EKC25717%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022306699%2E1.for.6032-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6032-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6032-8456.XP_022306699%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022334129%2E1.for.6216-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6216-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6216-8456.XP_022334129%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022304659%2E1.for.6335-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8456.XP_022304659%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022303269%2E1.for.6335-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8456.XP_022303269%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC40687%2E1.for.6431-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6431-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6431-8462.EKC40687%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC26607%2E1.for.6335-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8462.EKC26607%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022327039%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022327039%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022310439%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022310439%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022301039%2E1.for.6434-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6434-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6434-8462.XP_022301039%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022297319%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022297319%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC22917%2E1.for.6847-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.EKC22917%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022308249%2E1.for.6853-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6853-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6853-8456.XP_022308249%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022298739%2E1.for.6739-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6739-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6739-8462.XP_022298739%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022300239%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022300239%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022333229%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022333229%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC25877%2E1.for.6410-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6410-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6410-8456.EKC25877%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022309119%2E1.for.6847-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8462.XP_022309119%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC24987%2E1.for.6844-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6844-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6844-8456.EKC24987%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022303319%2E1.for.6847-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.XP_022303319%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022305329%2E1.for.6832-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6832-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6832-8456.XP_022305329%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022323009%2E1.for.6838-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6838-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6838-8456.XP_022323009%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC22107%2E1.for.6964-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6964-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6964-8462.EKC22107%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC27317%2E1.for.6844-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6844-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6844-8462.EKC27317%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC37647%2E1.for.6901-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6901-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6901-8462.EKC37647%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC31787%2E1.for.6410-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6410-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6410-8456.EKC31787%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC27327%2E1.for.6844-8342.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6844-8342.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6844-8342.EKC27327%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022290719%2E1.for.6850-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6850-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6850-8456.XP_022290719%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022296699%2E1.for.6838-8444.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6838-8444.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6838-8444.XP_022296699%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022312359%2E1.for.6216-8213.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6216-8213.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6216-8213.XP_022312359%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC24077%2E1.for.7195-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7195-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7195-8456.EKC24077%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC21397%2E1.for.6964-8396.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6964-8396.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6964-8396.EKC21397%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022336299%2E1.for.7063-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7063-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7063-8456.XP_022336299%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC30947%2E1.for.7207-8423.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7207-8423.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7207-8423.EKC30947%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC34617%2E1.for.7315-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7315-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7315-8462.EKC34617%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC25457%2E1.for.7195-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7195-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7195-8456.EKC25457%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022316869%2E1.for.7195-8411.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7195-8411.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7195-8411.XP_022316869%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022341349%2E1.for.6985-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6985-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6985-8462.XP_022341349%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022292749%2E1.for.6964-8183.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6964-8183.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6964-8183.XP_022292749%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022307849%2E1.for.6958-8078.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6958-8078.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6958-8078.XP_022307849%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022341639%2E1.for.7045-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7045-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7045-8462.XP_022341639%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC38047%2E1.for.6356-8420.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6356-8420.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6356-8420.EKC38047%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC34027%2E1.for.7042-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7042-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7042-8462.EKC34027%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC23977%2E1.for.7312-8330.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7312-8330.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7312-8330.EKC23977%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022308189%2E1.for.6521-7850.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6521-7850.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6521-7850.XP_022308189%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022312589%2E1.for.7267-8450.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7267-8450.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7267-8450.XP_022312589%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022311959%2E1.for.7267-8450.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7267-8450.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7267-8450.XP_022311959%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022308179%2E1.for.7312-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7312-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7312-8456.XP_022308179%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC33147%2E1.for.7207-8216.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7207-8216.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7207-8216.EKC33147%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022311999%2E1.for.7222-8357.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7222-8357.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7222-8357.XP_022311999%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC31497%2E1.for.7117-8357.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7117-8357.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7117-8357.EKC31497%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022300799%2E1.for.6904-7907.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6904-7907.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6904-7907.XP_022300799%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022336750%2E1.for.5999-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.XP_022336750%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC22888%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.EKC22888%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC37648%2E1.for.5999-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.EKC37648%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC21728%2E1.for.6341-8459.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6341-8459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6341-8459.EKC21728%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC24518%2E1.for.6216-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6216-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6216-8456.EKC24518%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC17768%2E1.for.6032-8453.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6032-8453.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6032-8453.EKC17768%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC40578%2E1.for.5999-8459.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8459.EKC40578%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC30928%2E1.for.6032-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6032-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6032-8456.EKC30928%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC34538%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.EKC34538%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC26038%2E1.for.5999-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.EKC26038%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC22728%2E1.for.6335-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8456.EKC22728%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC35548%2E1.for.6216-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6216-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6216-8456.EKC35548%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022343770%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022343770%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022344460%2E1.for.5999-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.XP_022344460%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022297320%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022297320%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC25388%2E1.for.6002-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6002-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6002-8456.EKC25388%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022308570%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022308570%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC27878%2E1.for.6410-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6410-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6410-8456.EKC27878%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022309170%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022309170%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC30748%2E1.for.6335-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8456.EKC30748%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC34178%2E1.for.5999-8426.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8426.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8426.EKC34178%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022304520%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022304520%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022336180%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022336180%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022303910%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022303910%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022299110%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022299110%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022341360%2E1.for.5999-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8462.XP_022341360%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022309030%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022309030%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022309180%2E1.for.6335-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8456.XP_022309180%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022303960%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022303960%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022309600%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022309600%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022304380%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022304380%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022309160%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022309160%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022304490%2E1.for.5999-8432.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8432.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8432.XP_022304490%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC42068%2E1.for.6332-8417.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6332-8417.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6332-8417.EKC42068%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC38628%2E1.for.6383-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6383-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6383-8456.EKC38628%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022345050%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022345050%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022304510%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022304510%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC24728%2E1.for.6335-8453.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8453.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8453.EKC24728%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022340470%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022340470%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC38658%2E1.for.6335-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8456.EKC38658%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022305050%2E1.for.6335-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8456.XP_022305050%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC36538%2E1.for.6335-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8462.EKC36538%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC40158%2E1.for.6847-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.EKC40158%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC30088%2E1.for.6847-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.EKC30088%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022305040%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022305040%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC25838%2E1.for.5999-8423.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8423.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8423.EKC25838%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022299120%2E1.for.6766-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6766-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6766-8456.XP_022299120%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022289330%2E1.for.6844-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6844-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6844-8462.XP_022289330%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022300870%2E1.for.6838-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6838-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6838-8456.XP_022300870%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022298600%2E1.for.6676-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6676-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6676-8456.XP_022298600%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022300630%2E1.for.6880-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6880-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6880-8462.XP_022300630%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022288740%2E1.for.6844-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6844-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6844-8462.XP_022288740%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC41958%2E1.for.6856-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6856-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6856-8456.EKC41958%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022307850%2E1.for.5999-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.5999-8456.XP_022307850%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC27318%2E1.for.6335-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6335-8462.EKC27318%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC24318%2E1.for.6964-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6964-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6964-8456.EKC24318%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022305620%2E1.for.6847-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8462.XP_022305620%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC26008%2E1.for.6847-8423.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8423.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8423.EKC26008%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022300810%2E1.for.6847-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.XP_022300810%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC27328%2E1.for.7006-8477.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7006-8477.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7006-8477.EKC27328%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022318960%2E1.for.6847-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8462.XP_022318960%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022298830%2E1.for.7024-8441.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7024-8441.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7024-8441.XP_022298830%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022288830%2E1.for.6958-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6958-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6958-8462.XP_022288830%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC38528%2E1.for.6904-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6904-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6904-8462.EKC38528%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC35068%2E1.for.6838-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6838-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6838-8456.EKC35068%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC33798%2E1.for.6497-8195.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6497-8195.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6497-8195.EKC33798%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022301360%2E1.for.6847-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6847-8456.XP_022301360%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022288880%2E1.for.7090-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7090-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7090-8462.XP_022288880%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC25118%2E1.for.7030-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7030-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7030-8456.EKC25118%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC18998%2E1.for.7195-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7195-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7195-8462.EKC18998%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC28138%2E1.for.7000-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7000-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7000-8462.EKC28138%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022322680%2E1.for.6853-8429.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6853-8429.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6853-8429.XP_022322680%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC40688%2E1.for.7201-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7201-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7201-8462.EKC40688%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022298560%2E1.for.6347-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6347-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6347-8456.XP_022298560%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022327250%2E1.for.7195-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7195-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7195-8462.XP_022327250%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC37738%2E1.for.7183-8423.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7183-8423.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7183-8423.EKC37738%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022301060%2E1.for.6922-8216.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6922-8216.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6922-8216.XP_022301060%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC34618%2E1.for.6446-7952.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6446-7952.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6446-7952.EKC34618%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC37408%2E1.for.7249-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7249-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7249-8456.EKC37408%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022307920%2E1.for.7117-8330.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7117-8330.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7117-8330.XP_022307920%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022301180%2E1.for.6868-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6868-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6868-8456.XP_022301180%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022336500%2E1.for.7045-8462.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7045-8462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7045-8462.XP_022336500%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022308250%2E1.for.6853-8456.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6853-8456.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6853-8456.XP_022308250%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC33398%2E1.for.7234-8459.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7234-8459.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7234-8459.EKC33398%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/XP_022297750%2E1.for.6964-8126.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6964-8126.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.6964-8126.XP_022297750%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/EKC20398%2E1.for.7399-8453.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7399-8453.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130993.7399-8453.EKC20398%2E1.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:1 now processing 0 ...processing 0 of 784 ...processing 1 of 784 ...processing 2 of 784 ...processing 3 of 784 ...processing 4 of 784 ...processing 5 of 784 ...processing 6 of 784 ...processing 7 of 784 ...processing 8 of 784 ...processing 9 of 784 ...processing 10 of 784 ...processing 11 of 784 ...processing 12 of 784 ...processing 13 of 784 ...processing 14 of 784 ...processing 15 of 784 ...processing 16 of 784 ...processing 17 of 784 ...processing 18 of 784 ...processing 19 of 784 ...processing 20 of 784 ...processing 21 of 784 ...processing 22 of 784 ...processing 23 of 784 ...processing 24 of 784 ...processing 25 of 784 ...processing 26 of 784 ...processing 27 of 784 ...processing 28 of 784 ...processing 29 of 784 ...processing 30 of 784 ...processing 31 of 784 ...processing 32 of 784 ...processing 33 of 784 ...processing 34 of 784 ...processing 35 of 784 ...processing 36 of 784 ...processing 37 of 784 ...processing 38 of 784 ...processing 39 of 784 ...processing 40 of 784 ...processing 41 of 784 ...processing 42 of 784 ...processing 43 of 784 ...processing 44 of 784 ...processing 45 of 784 ...processing 46 of 784 ...processing 47 of 784 ...processing 48 of 784 ...processing 49 of 784 ...processing 50 of 784 ...processing 51 of 784 ...processing 52 of 784 ...processing 53 of 784 ...processing 54 of 784 ...processing 55 of 784 ...processing 56 of 784 ...processing 57 of 784 ...processing 58 of 784 ...processing 59 of 784 ...processing 60 of 784 ...processing 61 of 784 ...processing 62 of 784 ...processing 63 of 784 ...processing 64 of 784 ...processing 65 of 784 ...processing 66 of 784 ...processing 67 of 784 ...processing 68 of 784 ...processing 69 of 784 ...processing 70 of 784 ...processing 71 of 784 ...processing 72 of 784 ...processing 73 of 784 ...processing 74 of 784 ...processing 75 of 784 ...trimming the rest in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:1 now processing 0 ...processing 0 of 491 ...processing 1 of 491 ...processing 2 of 491 ...processing 3 of 491 ...processing 4 of 491 ...processing 5 of 491 ...processing 6 of 491 ...processing 7 of 491 ...processing 8 of 491 ...processing 9 of 491 ...processing 10 of 491 ...processing 11 of 491 ...processing 12 of 491 ...processing 13 of 491 ...processing 14 of 491 ...processing 15 of 491 ...processing 16 of 491 ...processing 17 of 491 ...processing 18 of 491 ...processing 19 of 491 ...processing 20 of 491 ...processing 21 of 491 ...processing 22 of 491 ...processing 23 of 491 ...processing 24 of 491 ...processing 25 of 491 ...trimming the rest flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig130995 Length: 1703 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/DA/13/Contig130995//theVoid.Contig130995/0/Contig130995.0.all.rb -species all -dir /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/DA/13/Contig130995//theVoid.Contig130995/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130995.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/DA/13/Contig130995//theVoid.Contig130995/0/Contig130995.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130995.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/DA/13/Contig130995//theVoid.Contig130995/0/Contig130995.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130995.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/DA/13/Contig130995//theVoid.Contig130995/0/Contig130995.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130995.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/DA/13/Contig130995//theVoid.Contig130995/0/Contig130995.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130995.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/DA/13/Contig130995//theVoid.Contig130995/0/Contig130995.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130995.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/DA/13/Contig130995//theVoid.Contig130995/0/Contig130995.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130995.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/DA/13/Contig130995//theVoid.Contig130995/0/Contig130995.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130995.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/DA/13/Contig130995//theVoid.Contig130995/0/Contig130995.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130995.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/DA/13/Contig130995//theVoid.Contig130995/0/Contig130995.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130995.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/DA/13/Contig130995//theVoid.Contig130995/0/Contig130995.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/comp36352_c5_seq7.for.1-519.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130995.1-519.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130995.1-519.comp36352_c5_seq7.e.exonerate #-------------------------------# cleaning blastn... cleaning clusters.... total clusters:1 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130995.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/DA/13/Contig130995//theVoid.Contig130995/0/Contig130995.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130995.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/DA/13/Contig130995//theVoid.Contig130995/0/Contig130995.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130995.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/DA/13/Contig130995//theVoid.Contig130995/0/Contig130995.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130995.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/DA/13/Contig130995//theVoid.Contig130995/0/Contig130995.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130995.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/DA/13/Contig130995//theVoid.Contig130995/0/Contig130995.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130995.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/DA/13/Contig130995//theVoid.Contig130995/0/Contig130995.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130995.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/DA/13/Contig130995//theVoid.Contig130995/0/Contig130995.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130995.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/DA/13/Contig130995//theVoid.Contig130995/0/Contig130995.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130995.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/DA/13/Contig130995//theVoid.Contig130995/0/Contig130995.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130995.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/DA/13/Contig130995//theVoid.Contig130995/0/Contig130995.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig130996 Length: 2240 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/31/BD/Contig130996//theVoid.Contig130996/0/Contig130996.0.all.rb -species all -dir /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/31/BD/Contig130996//theVoid.Contig130996/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130996.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/31/BD/Contig130996//theVoid.Contig130996/0/Contig130996.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130996.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/31/BD/Contig130996//theVoid.Contig130996/0/Contig130996.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130996.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/31/BD/Contig130996//theVoid.Contig130996/0/Contig130996.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130996.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/31/BD/Contig130996//theVoid.Contig130996/0/Contig130996.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130996.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/31/BD/Contig130996//theVoid.Contig130996/0/Contig130996.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130996.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/31/BD/Contig130996//theVoid.Contig130996/0/Contig130996.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130996.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/31/BD/Contig130996//theVoid.Contig130996/0/Contig130996.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130996.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/31/BD/Contig130996//theVoid.Contig130996/0/Contig130996.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130996.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/31/BD/Contig130996//theVoid.Contig130996/0/Contig130996.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130996.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/31/BD/Contig130996//theVoid.Contig130996/0/Contig130996.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130996.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/31/BD/Contig130996//theVoid.Contig130996/0/Contig130996.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130996.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/31/BD/Contig130996//theVoid.Contig130996/0/Contig130996.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130996.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/31/BD/Contig130996//theVoid.Contig130996/0/Contig130996.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130996.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/31/BD/Contig130996//theVoid.Contig130996/0/Contig130996.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130996.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/31/BD/Contig130996//theVoid.Contig130996/0/Contig130996.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130996.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/31/BD/Contig130996//theVoid.Contig130996/0/Contig130996.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130996.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/31/BD/Contig130996//theVoid.Contig130996/0/Contig130996.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130996.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/31/BD/Contig130996//theVoid.Contig130996/0/Contig130996.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130996.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/31/BD/Contig130996//theVoid.Contig130996/0/Contig130996.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130996.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/31/BD/Contig130996//theVoid.Contig130996/0/Contig130996.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig130997 Length: 1371 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/7F/41/Contig130997//theVoid.Contig130997/0/Contig130997.0.all.rb -species all -dir /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/7F/41/Contig130997//theVoid.Contig130997/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130997.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/7F/41/Contig130997//theVoid.Contig130997/0/Contig130997.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130997.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/7F/41/Contig130997//theVoid.Contig130997/0/Contig130997.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130997.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/7F/41/Contig130997//theVoid.Contig130997/0/Contig130997.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130997.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/7F/41/Contig130997//theVoid.Contig130997/0/Contig130997.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130997.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/7F/41/Contig130997//theVoid.Contig130997/0/Contig130997.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130997.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/7F/41/Contig130997//theVoid.Contig130997/0/Contig130997.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130997.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/7F/41/Contig130997//theVoid.Contig130997/0/Contig130997.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130997.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/7F/41/Contig130997//theVoid.Contig130997/0/Contig130997.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130997.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/7F/41/Contig130997//theVoid.Contig130997/0/Contig130997.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130997.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/7F/41/Contig130997//theVoid.Contig130997/0/Contig130997.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130997.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/7F/41/Contig130997//theVoid.Contig130997/0/Contig130997.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130997.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/7F/41/Contig130997//theVoid.Contig130997/0/Contig130997.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130997.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/7F/41/Contig130997//theVoid.Contig130997/0/Contig130997.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130997.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/7F/41/Contig130997//theVoid.Contig130997/0/Contig130997.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130997.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/7F/41/Contig130997//theVoid.Contig130997/0/Contig130997.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130997.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/7F/41/Contig130997//theVoid.Contig130997/0/Contig130997.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130997.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/7F/41/Contig130997//theVoid.Contig130997/0/Contig130997.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130997.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/7F/41/Contig130997//theVoid.Contig130997/0/Contig130997.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130997.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/7F/41/Contig130997//theVoid.Contig130997/0/Contig130997.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130997.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/7F/41/Contig130997//theVoid.Contig130997/0/Contig130997.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig130998 Length: 1057 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/42/0B/Contig130998//theVoid.Contig130998/0/Contig130998.0.all.rb -species all -dir /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/42/0B/Contig130998//theVoid.Contig130998/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130998.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/42/0B/Contig130998//theVoid.Contig130998/0/Contig130998.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130998.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/42/0B/Contig130998//theVoid.Contig130998/0/Contig130998.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130998.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/42/0B/Contig130998//theVoid.Contig130998/0/Contig130998.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130998.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/42/0B/Contig130998//theVoid.Contig130998/0/Contig130998.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130998.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/42/0B/Contig130998//theVoid.Contig130998/0/Contig130998.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130998.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/42/0B/Contig130998//theVoid.Contig130998/0/Contig130998.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130998.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/42/0B/Contig130998//theVoid.Contig130998/0/Contig130998.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130998.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/42/0B/Contig130998//theVoid.Contig130998/0/Contig130998.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130998.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/42/0B/Contig130998//theVoid.Contig130998/0/Contig130998.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130998.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/42/0B/Contig130998//theVoid.Contig130998/0/Contig130998.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130998.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/42/0B/Contig130998//theVoid.Contig130998/0/Contig130998.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130998.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/42/0B/Contig130998//theVoid.Contig130998/0/Contig130998.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130998.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/42/0B/Contig130998//theVoid.Contig130998/0/Contig130998.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130998.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/42/0B/Contig130998//theVoid.Contig130998/0/Contig130998.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130998.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/42/0B/Contig130998//theVoid.Contig130998/0/Contig130998.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130998.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/42/0B/Contig130998//theVoid.Contig130998/0/Contig130998.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130998.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/42/0B/Contig130998//theVoid.Contig130998/0/Contig130998.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130998.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/42/0B/Contig130998//theVoid.Contig130998/0/Contig130998.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130998.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/42/0B/Contig130998//theVoid.Contig130998/0/Contig130998.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig130998.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/42/0B/Contig130998//theVoid.Contig130998/0/Contig130998.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig131001 Length: 1178 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/AA/2C/Contig131001//theVoid.Contig131001/0/Contig131001.0.all.rb -species all -dir /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/AA/2C/Contig131001//theVoid.Contig131001/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131001.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/AA/2C/Contig131001//theVoid.Contig131001/0/Contig131001.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131001.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/AA/2C/Contig131001//theVoid.Contig131001/0/Contig131001.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131001.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/AA/2C/Contig131001//theVoid.Contig131001/0/Contig131001.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131001.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/AA/2C/Contig131001//theVoid.Contig131001/0/Contig131001.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131001.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/AA/2C/Contig131001//theVoid.Contig131001/0/Contig131001.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131001.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/AA/2C/Contig131001//theVoid.Contig131001/0/Contig131001.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131001.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/AA/2C/Contig131001//theVoid.Contig131001/0/Contig131001.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131001.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/AA/2C/Contig131001//theVoid.Contig131001/0/Contig131001.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131001.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/AA/2C/Contig131001//theVoid.Contig131001/0/Contig131001.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131001.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/AA/2C/Contig131001//theVoid.Contig131001/0/Contig131001.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131001.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/AA/2C/Contig131001//theVoid.Contig131001/0/Contig131001.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131001.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/AA/2C/Contig131001//theVoid.Contig131001/0/Contig131001.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131001.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/AA/2C/Contig131001//theVoid.Contig131001/0/Contig131001.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131001.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/AA/2C/Contig131001//theVoid.Contig131001/0/Contig131001.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131001.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/AA/2C/Contig131001//theVoid.Contig131001/0/Contig131001.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131001.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/AA/2C/Contig131001//theVoid.Contig131001/0/Contig131001.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131001.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/AA/2C/Contig131001//theVoid.Contig131001/0/Contig131001.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131001.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/AA/2C/Contig131001//theVoid.Contig131001/0/Contig131001.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131001.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/AA/2C/Contig131001//theVoid.Contig131001/0/Contig131001.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131001.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/AA/2C/Contig131001//theVoid.Contig131001/0/Contig131001.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig131002 Length: 1395 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/B8/5D/Contig131002//theVoid.Contig131002/0/Contig131002.0.all.rb -species all -dir /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/B8/5D/Contig131002//theVoid.Contig131002/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131002.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/B8/5D/Contig131002//theVoid.Contig131002/0/Contig131002.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131002.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/B8/5D/Contig131002//theVoid.Contig131002/0/Contig131002.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131002.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/B8/5D/Contig131002//theVoid.Contig131002/0/Contig131002.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131002.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/B8/5D/Contig131002//theVoid.Contig131002/0/Contig131002.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131002.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/B8/5D/Contig131002//theVoid.Contig131002/0/Contig131002.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131002.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/B8/5D/Contig131002//theVoid.Contig131002/0/Contig131002.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131002.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/B8/5D/Contig131002//theVoid.Contig131002/0/Contig131002.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131002.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/B8/5D/Contig131002//theVoid.Contig131002/0/Contig131002.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131002.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/B8/5D/Contig131002//theVoid.Contig131002/0/Contig131002.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131002.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/B8/5D/Contig131002//theVoid.Contig131002/0/Contig131002.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/comp39281_c3_seq6.for.636-1395.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131002.636-1395.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131002.636-1395.comp39281_c3_seq6.e.exonerate #-------------------------------# cleaning blastn... flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131002.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/B8/5D/Contig131002//theVoid.Contig131002/0/Contig131002.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131002.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/B8/5D/Contig131002//theVoid.Contig131002/0/Contig131002.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131002.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/B8/5D/Contig131002//theVoid.Contig131002/0/Contig131002.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131002.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/B8/5D/Contig131002//theVoid.Contig131002/0/Contig131002.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131002.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/B8/5D/Contig131002//theVoid.Contig131002/0/Contig131002.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131002.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/B8/5D/Contig131002//theVoid.Contig131002/0/Contig131002.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131002.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/B8/5D/Contig131002//theVoid.Contig131002/0/Contig131002.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131002.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/B8/5D/Contig131002//theVoid.Contig131002/0/Contig131002.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131002.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/B8/5D/Contig131002//theVoid.Contig131002/0/Contig131002.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131002.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/B8/5D/Contig131002//theVoid.Contig131002/0/Contig131002.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig131004 Length: 1155 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/8D/A3/Contig131004//theVoid.Contig131004/0/Contig131004.0.all.rb -species all -dir /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/8D/A3/Contig131004//theVoid.Contig131004/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131004.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/8D/A3/Contig131004//theVoid.Contig131004/0/Contig131004.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131004.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/8D/A3/Contig131004//theVoid.Contig131004/0/Contig131004.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131004.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/8D/A3/Contig131004//theVoid.Contig131004/0/Contig131004.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131004.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/8D/A3/Contig131004//theVoid.Contig131004/0/Contig131004.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131004.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/8D/A3/Contig131004//theVoid.Contig131004/0/Contig131004.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131004.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/8D/A3/Contig131004//theVoid.Contig131004/0/Contig131004.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131004.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/8D/A3/Contig131004//theVoid.Contig131004/0/Contig131004.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131004.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/8D/A3/Contig131004//theVoid.Contig131004/0/Contig131004.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131004.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/8D/A3/Contig131004//theVoid.Contig131004/0/Contig131004.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131004.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/8D/A3/Contig131004//theVoid.Contig131004/0/Contig131004.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131004.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/8D/A3/Contig131004//theVoid.Contig131004/0/Contig131004.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131004.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/8D/A3/Contig131004//theVoid.Contig131004/0/Contig131004.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131004.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/8D/A3/Contig131004//theVoid.Contig131004/0/Contig131004.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131004.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/8D/A3/Contig131004//theVoid.Contig131004/0/Contig131004.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131004.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/8D/A3/Contig131004//theVoid.Contig131004/0/Contig131004.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131004.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/8D/A3/Contig131004//theVoid.Contig131004/0/Contig131004.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131004.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/8D/A3/Contig131004//theVoid.Contig131004/0/Contig131004.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131004.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/8D/A3/Contig131004//theVoid.Contig131004/0/Contig131004.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131004.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/8D/A3/Contig131004//theVoid.Contig131004/0/Contig131004.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131004.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/8D/A3/Contig131004//theVoid.Contig131004/0/Contig131004.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig131006 Length: 2650 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/AC/F9/Contig131006//theVoid.Contig131006/0/Contig131006.0.all.rb -species all -dir /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/AC/F9/Contig131006//theVoid.Contig131006/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131006.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/AC/F9/Contig131006//theVoid.Contig131006/0/Contig131006.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131006.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/AC/F9/Contig131006//theVoid.Contig131006/0/Contig131006.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131006.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/AC/F9/Contig131006//theVoid.Contig131006/0/Contig131006.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131006.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/AC/F9/Contig131006//theVoid.Contig131006/0/Contig131006.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131006.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/AC/F9/Contig131006//theVoid.Contig131006/0/Contig131006.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131006.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/AC/F9/Contig131006//theVoid.Contig131006/0/Contig131006.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131006.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/AC/F9/Contig131006//theVoid.Contig131006/0/Contig131006.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131006.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/AC/F9/Contig131006//theVoid.Contig131006/0/Contig131006.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131006.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/AC/F9/Contig131006//theVoid.Contig131006/0/Contig131006.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131006.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/AC/F9/Contig131006//theVoid.Contig131006/0/Contig131006.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/comp39048_c0_seq7.for.1193-2571.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131006.1193-2571.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131006.1193-2571.comp39048_c0_seq7.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/comp39048_c0_seq2.for.1528-2571.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131006.1528-2571.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131006.1528-2571.comp39048_c0_seq2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/comp39048_c0_seq3.for.1128-2571.0.fasta -t /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131006.1128-2571.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131006.1128-2571.comp39048_c0_seq3.e.exonerate #-------------------------------# cleaning blastn... cleaning clusters.... total clusters:1 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131006.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/AC/F9/Contig131006//theVoid.Contig131006/0/Contig131006.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131006.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/AC/F9/Contig131006//theVoid.Contig131006/0/Contig131006.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131006.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/AC/F9/Contig131006//theVoid.Contig131006/0/Contig131006.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131006.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/AC/F9/Contig131006//theVoid.Contig131006/0/Contig131006.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131006.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/AC/F9/Contig131006//theVoid.Contig131006/0/Contig131006.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131006.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/AC/F9/Contig131006//theVoid.Contig131006/0/Contig131006.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131006.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/AC/F9/Contig131006//theVoid.Contig131006/0/Contig131006.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131006.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/AC/F9/Contig131006//theVoid.Contig131006/0/Contig131006.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131006.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/AC/F9/Contig131006//theVoid.Contig131006/0/Contig131006.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-16908/t.31/cctools-temp-t.31.OfuE1b/maker_nmJDLH/0/Contig131006.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-16908/t.31/Olurida_v081.maker.output/Olurida_v081_datastore/AC/F9/Contig131006//theVoid.Contig131006/0/Contig131006.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output Maker is now finished!!! Start_time: 1533652860 End_time: 1533653209 Elapsed: 349 ================================= Argument "2.53_01" isn't numeric in numeric ge (>=) at /usr/local/lib/x86_64-linux-gnu/perl/5.22.1/forks.pm line 1570. Unknown option: debug_size_limit STATUS: Parsing control files... STATUS: Processing and indexing input FASTA files... STATUS: Setting up database for any GFF3 input... A data structure will be created for you at: /tmp/worker-1000-11378/t.52/Olurida_v081.maker.output/Olurida_v081_datastore To access files for individual sequences use the datastore index: /tmp/worker-1000-11378/t.52/Olurida_v081.maker.output/Olurida_v081_master_datastore_index.log STATUS: Now running MAKER... examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig139737 Length: 1154 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-11378/t.52/Olurida_v081.maker.output/Olurida_v081_datastore/6D/F5/Contig139737//theVoid.Contig139737/0/Contig139737.0.all.rb -species all -dir /tmp/worker-1000-11378/t.52/Olurida_v081.maker.output/Olurida_v081_datastore/6D/F5/Contig139737//theVoid.Contig139737/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139737.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.52/Olurida_v081.maker.output/Olurida_v081_datastore/6D/F5/Contig139737//theVoid.Contig139737/0/Contig139737.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139737.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.52/Olurida_v081.maker.output/Olurida_v081_datastore/6D/F5/Contig139737//theVoid.Contig139737/0/Contig139737.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139737.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.52/Olurida_v081.maker.output/Olurida_v081_datastore/6D/F5/Contig139737//theVoid.Contig139737/0/Contig139737.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139737.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.52/Olurida_v081.maker.output/Olurida_v081_datastore/6D/F5/Contig139737//theVoid.Contig139737/0/Contig139737.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139737.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.52/Olurida_v081.maker.output/Olurida_v081_datastore/6D/F5/Contig139737//theVoid.Contig139737/0/Contig139737.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139737.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.52/Olurida_v081.maker.output/Olurida_v081_datastore/6D/F5/Contig139737//theVoid.Contig139737/0/Contig139737.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139737.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.52/Olurida_v081.maker.output/Olurida_v081_datastore/6D/F5/Contig139737//theVoid.Contig139737/0/Contig139737.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139737.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.52/Olurida_v081.maker.output/Olurida_v081_datastore/6D/F5/Contig139737//theVoid.Contig139737/0/Contig139737.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139737.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.52/Olurida_v081.maker.output/Olurida_v081_datastore/6D/F5/Contig139737//theVoid.Contig139737/0/Contig139737.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139737.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.52/Olurida_v081.maker.output/Olurida_v081_datastore/6D/F5/Contig139737//theVoid.Contig139737/0/Contig139737.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139737.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.52/Olurida_v081.maker.output/Olurida_v081_datastore/6D/F5/Contig139737//theVoid.Contig139737/0/Contig139737.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139737.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.52/Olurida_v081.maker.output/Olurida_v081_datastore/6D/F5/Contig139737//theVoid.Contig139737/0/Contig139737.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139737.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.52/Olurida_v081.maker.output/Olurida_v081_datastore/6D/F5/Contig139737//theVoid.Contig139737/0/Contig139737.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139737.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.52/Olurida_v081.maker.output/Olurida_v081_datastore/6D/F5/Contig139737//theVoid.Contig139737/0/Contig139737.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139737.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.52/Olurida_v081.maker.output/Olurida_v081_datastore/6D/F5/Contig139737//theVoid.Contig139737/0/Contig139737.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139737.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.52/Olurida_v081.maker.output/Olurida_v081_datastore/6D/F5/Contig139737//theVoid.Contig139737/0/Contig139737.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139737.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.52/Olurida_v081.maker.output/Olurida_v081_datastore/6D/F5/Contig139737//theVoid.Contig139737/0/Contig139737.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139737.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.52/Olurida_v081.maker.output/Olurida_v081_datastore/6D/F5/Contig139737//theVoid.Contig139737/0/Contig139737.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139737.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.52/Olurida_v081.maker.output/Olurida_v081_datastore/6D/F5/Contig139737//theVoid.Contig139737/0/Contig139737.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139737.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.52/Olurida_v081.maker.output/Olurida_v081_datastore/6D/F5/Contig139737//theVoid.Contig139737/0/Contig139737.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig139738 Length: 2436 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-11378/t.52/Olurida_v081.maker.output/Olurida_v081_datastore/52/BC/Contig139738//theVoid.Contig139738/0/Contig139738.0.all.rb -species all -dir /tmp/worker-1000-11378/t.52/Olurida_v081.maker.output/Olurida_v081_datastore/52/BC/Contig139738//theVoid.Contig139738/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139738.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.52/Olurida_v081.maker.output/Olurida_v081_datastore/52/BC/Contig139738//theVoid.Contig139738/0/Contig139738.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139738.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.52/Olurida_v081.maker.output/Olurida_v081_datastore/52/BC/Contig139738//theVoid.Contig139738/0/Contig139738.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139738.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.52/Olurida_v081.maker.output/Olurida_v081_datastore/52/BC/Contig139738//theVoid.Contig139738/0/Contig139738.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139738.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.52/Olurida_v081.maker.output/Olurida_v081_datastore/52/BC/Contig139738//theVoid.Contig139738/0/Contig139738.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139738.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.52/Olurida_v081.maker.output/Olurida_v081_datastore/52/BC/Contig139738//theVoid.Contig139738/0/Contig139738.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139738.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.52/Olurida_v081.maker.output/Olurida_v081_datastore/52/BC/Contig139738//theVoid.Contig139738/0/Contig139738.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139738.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.52/Olurida_v081.maker.output/Olurida_v081_datastore/52/BC/Contig139738//theVoid.Contig139738/0/Contig139738.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139738.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.52/Olurida_v081.maker.output/Olurida_v081_datastore/52/BC/Contig139738//theVoid.Contig139738/0/Contig139738.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139738.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.52/Olurida_v081.maker.output/Olurida_v081_datastore/52/BC/Contig139738//theVoid.Contig139738/0/Contig139738.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139738.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.52/Olurida_v081.maker.output/Olurida_v081_datastore/52/BC/Contig139738//theVoid.Contig139738/0/Contig139738.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/comp8935_c0_seq1.for.1-574.0.fasta -t /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139738.1-574.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139738.1-574.comp8935_c0_seq1.e.exonerate #-------------------------------# cleaning blastn... flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139738.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.52/Olurida_v081.maker.output/Olurida_v081_datastore/52/BC/Contig139738//theVoid.Contig139738/0/Contig139738.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139738.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.52/Olurida_v081.maker.output/Olurida_v081_datastore/52/BC/Contig139738//theVoid.Contig139738/0/Contig139738.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139738.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.52/Olurida_v081.maker.output/Olurida_v081_datastore/52/BC/Contig139738//theVoid.Contig139738/0/Contig139738.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139738.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.52/Olurida_v081.maker.output/Olurida_v081_datastore/52/BC/Contig139738//theVoid.Contig139738/0/Contig139738.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139738.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.52/Olurida_v081.maker.output/Olurida_v081_datastore/52/BC/Contig139738//theVoid.Contig139738/0/Contig139738.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139738.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.52/Olurida_v081.maker.output/Olurida_v081_datastore/52/BC/Contig139738//theVoid.Contig139738/0/Contig139738.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139738.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.52/Olurida_v081.maker.output/Olurida_v081_datastore/52/BC/Contig139738//theVoid.Contig139738/0/Contig139738.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139738.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.52/Olurida_v081.maker.output/Olurida_v081_datastore/52/BC/Contig139738//theVoid.Contig139738/0/Contig139738.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139738.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.52/Olurida_v081.maker.output/Olurida_v081_datastore/52/BC/Contig139738//theVoid.Contig139738/0/Contig139738.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139738.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.52/Olurida_v081.maker.output/Olurida_v081_datastore/52/BC/Contig139738//theVoid.Contig139738/0/Contig139738.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig139739 Length: 2042 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-11378/t.52/Olurida_v081.maker.output/Olurida_v081_datastore/CA/5A/Contig139739//theVoid.Contig139739/0/Contig139739.0.all.rb -species all -dir /tmp/worker-1000-11378/t.52/Olurida_v081.maker.output/Olurida_v081_datastore/CA/5A/Contig139739//theVoid.Contig139739/0 -pa 1 #-------------------------------# collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139739.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.52/Olurida_v081.maker.output/Olurida_v081_datastore/CA/5A/Contig139739//theVoid.Contig139739/0/Contig139739.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139739.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.52/Olurida_v081.maker.output/Olurida_v081_datastore/CA/5A/Contig139739//theVoid.Contig139739/0/Contig139739.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139739.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.52/Olurida_v081.maker.output/Olurida_v081_datastore/CA/5A/Contig139739//theVoid.Contig139739/0/Contig139739.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139739.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.52/Olurida_v081.maker.output/Olurida_v081_datastore/CA/5A/Contig139739//theVoid.Contig139739/0/Contig139739.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139739.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.52/Olurida_v081.maker.output/Olurida_v081_datastore/CA/5A/Contig139739//theVoid.Contig139739/0/Contig139739.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139739.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.52/Olurida_v081.maker.output/Olurida_v081_datastore/CA/5A/Contig139739//theVoid.Contig139739/0/Contig139739.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139739.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.52/Olurida_v081.maker.output/Olurida_v081_datastore/CA/5A/Contig139739//theVoid.Contig139739/0/Contig139739.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139739.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.52/Olurida_v081.maker.output/Olurida_v081_datastore/CA/5A/Contig139739//theVoid.Contig139739/0/Contig139739.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139739.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.52/Olurida_v081.maker.output/Olurida_v081_datastore/CA/5A/Contig139739//theVoid.Contig139739/0/Contig139739.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139739.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-11378/t.52/Olurida_v081.maker.output/Olurida_v081_datastore/CA/5A/Contig139739//theVoid.Contig139739/0/Contig139739.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/comp26597_c0_seq1.for.133-1291.0.fasta -t /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139739.133-1291.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139739.133-1291.comp26597_c0_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/comp26597_c0_seq2.for.288-1291.0.fasta -t /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139739.288-1291.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139739.288-1291.comp26597_c0_seq2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/comp26597_c1_seq1.for.1-990.0.fasta -t /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139739.1-990.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139739.1-990.comp26597_c1_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/comp39628_c1_seq1.for.519-1586.0.fasta -t /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139739.519-1586.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139739.519-1586.comp39628_c1_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/comp39628_c0_seq1.for.1069-2042.0.fasta -t /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139739.1069-2042.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139739.1069-2042.comp39628_c0_seq1.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:1 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139739.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.52/Olurida_v081.maker.output/Olurida_v081_datastore/CA/5A/Contig139739//theVoid.Contig139739/0/Contig139739.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139739.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.52/Olurida_v081.maker.output/Olurida_v081_datastore/CA/5A/Contig139739//theVoid.Contig139739/0/Contig139739.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139739.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.52/Olurida_v081.maker.output/Olurida_v081_datastore/CA/5A/Contig139739//theVoid.Contig139739/0/Contig139739.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139739.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.52/Olurida_v081.maker.output/Olurida_v081_datastore/CA/5A/Contig139739//theVoid.Contig139739/0/Contig139739.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-11378/t.52/cctools-temp-t.52.QN6ucG/maker_rmWpJN/0/Contig139739.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-11378/t.52/Olurida_v081.maker.output/Olurida_v081_datastore/CA/5A/Contig139739//theVoid.Contig139739/0/Contig139739.0.gigas_virginica