Argument "2.53_01" isn't numeric in numeric ge (>=) at /usr/local/lib/x86_64-linux-gnu/perl/5.22.1/forks.pm line 1570. Unknown option: debug_size_limit STATUS: Parsing control files... STATUS: Processing and indexing input FASTA files... STATUS: Setting up database for any GFF3 input... A data structure will be created for you at: /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore To access files for individual sequences use the datastore index: /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_master_datastore_index.log STATUS: Now running MAKER... examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig75899 Length: 3169 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/AB/57/Contig75899//theVoid.Contig75899/0/Contig75899.0.all.rb -species all -dir /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/AB/57/Contig75899//theVoid.Contig75899/0 -pa 1 #-------------------------------# doing blastx repeats formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/blastprep/te_proteins%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75899.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/AB/57/Contig75899//theVoid.Contig75899/0/Contig75899.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/blastprep/te_proteins%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75899.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/AB/57/Contig75899//theVoid.Contig75899/0/Contig75899.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/blastprep/te_proteins%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75899.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/AB/57/Contig75899//theVoid.Contig75899/0/Contig75899.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/blastprep/te_proteins%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75899.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/AB/57/Contig75899//theVoid.Contig75899/0/Contig75899.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/blastprep/te_proteins%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75899.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/AB/57/Contig75899//theVoid.Contig75899/0/Contig75899.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/blastprep/te_proteins%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75899.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/AB/57/Contig75899//theVoid.Contig75899/0/Contig75899.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/blastprep/te_proteins%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75899.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/AB/57/Contig75899//theVoid.Contig75899/0/Contig75899.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/blastprep/te_proteins%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75899.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/AB/57/Contig75899//theVoid.Contig75899/0/Contig75899.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/blastprep/te_proteins%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75899.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/AB/57/Contig75899//theVoid.Contig75899/0/Contig75899.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/blastprep/te_proteins%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75899.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/AB/57/Contig75899//theVoid.Contig75899/0/Contig75899.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75899.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/AB/57/Contig75899//theVoid.Contig75899/0/Contig75899.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75899.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/AB/57/Contig75899//theVoid.Contig75899/0/Contig75899.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75899.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/AB/57/Contig75899//theVoid.Contig75899/0/Contig75899.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75899.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/AB/57/Contig75899//theVoid.Contig75899/0/Contig75899.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75899.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/AB/57/Contig75899//theVoid.Contig75899/0/Contig75899.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75899.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/AB/57/Contig75899//theVoid.Contig75899/0/Contig75899.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75899.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/AB/57/Contig75899//theVoid.Contig75899/0/Contig75899.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75899.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/AB/57/Contig75899//theVoid.Contig75899/0/Contig75899.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75899.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/AB/57/Contig75899//theVoid.Contig75899/0/Contig75899.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75899.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/AB/57/Contig75899//theVoid.Contig75899/0/Contig75899.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports flattening EST clusters doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75899.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/AB/57/Contig75899//theVoid.Contig75899/0/Contig75899.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75899.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/AB/57/Contig75899//theVoid.Contig75899/0/Contig75899.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75899.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/AB/57/Contig75899//theVoid.Contig75899/0/Contig75899.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75899.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/AB/57/Contig75899//theVoid.Contig75899/0/Contig75899.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75899.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/AB/57/Contig75899//theVoid.Contig75899/0/Contig75899.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75899.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/AB/57/Contig75899//theVoid.Contig75899/0/Contig75899.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75899.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/AB/57/Contig75899//theVoid.Contig75899/0/Contig75899.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75899.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/AB/57/Contig75899//theVoid.Contig75899/0/Contig75899.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75899.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/AB/57/Contig75899//theVoid.Contig75899/0/Contig75899.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75899.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/AB/57/Contig75899//theVoid.Contig75899/0/Contig75899.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig75900 Length: 4154 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/E6/F2/Contig75900//theVoid.Contig75900/0/Contig75900.0.all.rb -species all -dir /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/E6/F2/Contig75900//theVoid.Contig75900/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75900.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/E6/F2/Contig75900//theVoid.Contig75900/0/Contig75900.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75900.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/E6/F2/Contig75900//theVoid.Contig75900/0/Contig75900.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75900.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/E6/F2/Contig75900//theVoid.Contig75900/0/Contig75900.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75900.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/E6/F2/Contig75900//theVoid.Contig75900/0/Contig75900.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75900.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/E6/F2/Contig75900//theVoid.Contig75900/0/Contig75900.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75900.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/E6/F2/Contig75900//theVoid.Contig75900/0/Contig75900.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75900.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/E6/F2/Contig75900//theVoid.Contig75900/0/Contig75900.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75900.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/E6/F2/Contig75900//theVoid.Contig75900/0/Contig75900.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75900.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/E6/F2/Contig75900//theVoid.Contig75900/0/Contig75900.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75900.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/E6/F2/Contig75900//theVoid.Contig75900/0/Contig75900.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75900.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/E6/F2/Contig75900//theVoid.Contig75900/0/Contig75900.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75900.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/E6/F2/Contig75900//theVoid.Contig75900/0/Contig75900.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75900.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/E6/F2/Contig75900//theVoid.Contig75900/0/Contig75900.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75900.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/E6/F2/Contig75900//theVoid.Contig75900/0/Contig75900.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75900.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/E6/F2/Contig75900//theVoid.Contig75900/0/Contig75900.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75900.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/E6/F2/Contig75900//theVoid.Contig75900/0/Contig75900.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75900.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/E6/F2/Contig75900//theVoid.Contig75900/0/Contig75900.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75900.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/E6/F2/Contig75900//theVoid.Contig75900/0/Contig75900.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75900.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/E6/F2/Contig75900//theVoid.Contig75900/0/Contig75900.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75900.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/E6/F2/Contig75900//theVoid.Contig75900/0/Contig75900.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/comp36374_c2_seq11.for.423-1362.0.fasta -t /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75900.423-1362.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75900.423-1362.comp36374_c2_seq11.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/comp36374_c2_seq15.for.423-1379.0.fasta -t /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75900.423-1379.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75900.423-1379.comp36374_c2_seq15.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/comp40911_c1_seq8.for.3454-4154.0.fasta -t /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75900.3454-4154.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75900.3454-4154.comp40911_c1_seq8.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/comp40911_c1_seq9.for.3456-4154.0.fasta -t /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75900.3456-4154.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75900.3456-4154.comp40911_c1_seq9.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/comp40911_c1_seq11.for.3456-4154.0.fasta -t /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75900.3456-4154.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75900.3456-4154.comp40911_c1_seq11.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/comp40911_c1_seq12.for.3456-4154.0.fasta -t /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75900.3456-4154.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75900.3456-4154.comp40911_c1_seq12.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/comp40911_c1_seq3.for.3454-4154.0.fasta -t /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75900.3454-4154.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75900.3454-4154.comp40911_c1_seq3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/comp40911_c1_seq13.for.3456-4154.0.fasta -t /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75900.3456-4154.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75900.3456-4154.comp40911_c1_seq13.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/comp40911_c1_seq4.for.3454-4154.0.fasta -t /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75900.3454-4154.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75900.3454-4154.comp40911_c1_seq4.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/comp40911_c1_seq14.for.3456-4154.0.fasta -t /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75900.3456-4154.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75900.3456-4154.comp40911_c1_seq14.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/comp40911_c1_seq5.for.3454-4154.0.fasta -t /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75900.3454-4154.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75900.3454-4154.comp40911_c1_seq5.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/comp40911_c1_seq6.for.3454-4154.0.fasta -t /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75900.3454-4154.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75900.3454-4154.comp40911_c1_seq6.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:1 now processing 0 ...processing 0 of 2 ...processing 1 of 2 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75900.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/E6/F2/Contig75900//theVoid.Contig75900/0/Contig75900.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75900.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/E6/F2/Contig75900//theVoid.Contig75900/0/Contig75900.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75900.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/E6/F2/Contig75900//theVoid.Contig75900/0/Contig75900.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75900.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/E6/F2/Contig75900//theVoid.Contig75900/0/Contig75900.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75900.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/E6/F2/Contig75900//theVoid.Contig75900/0/Contig75900.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75900.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/E6/F2/Contig75900//theVoid.Contig75900/0/Contig75900.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75900.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/E6/F2/Contig75900//theVoid.Contig75900/0/Contig75900.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75900.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/E6/F2/Contig75900//theVoid.Contig75900/0/Contig75900.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75900.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/E6/F2/Contig75900//theVoid.Contig75900/0/Contig75900.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75900.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/E6/F2/Contig75900//theVoid.Contig75900/0/Contig75900.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig75901 Length: 1933 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/9C/DF/Contig75901//theVoid.Contig75901/0/Contig75901.0.all.rb -species all -dir /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/9C/DF/Contig75901//theVoid.Contig75901/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75901.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/9C/DF/Contig75901//theVoid.Contig75901/0/Contig75901.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75901.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/9C/DF/Contig75901//theVoid.Contig75901/0/Contig75901.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75901.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/9C/DF/Contig75901//theVoid.Contig75901/0/Contig75901.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75901.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/9C/DF/Contig75901//theVoid.Contig75901/0/Contig75901.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75901.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/9C/DF/Contig75901//theVoid.Contig75901/0/Contig75901.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75901.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/9C/DF/Contig75901//theVoid.Contig75901/0/Contig75901.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75901.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/9C/DF/Contig75901//theVoid.Contig75901/0/Contig75901.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75901.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/9C/DF/Contig75901//theVoid.Contig75901/0/Contig75901.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75901.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/9C/DF/Contig75901//theVoid.Contig75901/0/Contig75901.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75901.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/9C/DF/Contig75901//theVoid.Contig75901/0/Contig75901.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75901.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/9C/DF/Contig75901//theVoid.Contig75901/0/Contig75901.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75901.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/9C/DF/Contig75901//theVoid.Contig75901/0/Contig75901.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75901.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/9C/DF/Contig75901//theVoid.Contig75901/0/Contig75901.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75901.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/9C/DF/Contig75901//theVoid.Contig75901/0/Contig75901.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75901.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/9C/DF/Contig75901//theVoid.Contig75901/0/Contig75901.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75901.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/9C/DF/Contig75901//theVoid.Contig75901/0/Contig75901.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75901.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/9C/DF/Contig75901//theVoid.Contig75901/0/Contig75901.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75901.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/9C/DF/Contig75901//theVoid.Contig75901/0/Contig75901.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75901.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/9C/DF/Contig75901//theVoid.Contig75901/0/Contig75901.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75901.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/9C/DF/Contig75901//theVoid.Contig75901/0/Contig75901.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75901.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/9C/DF/Contig75901//theVoid.Contig75901/0/Contig75901.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75901.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/9C/DF/Contig75901//theVoid.Contig75901/0/Contig75901.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75901.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/9C/DF/Contig75901//theVoid.Contig75901/0/Contig75901.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75901.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/9C/DF/Contig75901//theVoid.Contig75901/0/Contig75901.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75901.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/9C/DF/Contig75901//theVoid.Contig75901/0/Contig75901.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75901.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/9C/DF/Contig75901//theVoid.Contig75901/0/Contig75901.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75901.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/9C/DF/Contig75901//theVoid.Contig75901/0/Contig75901.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75901.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/9C/DF/Contig75901//theVoid.Contig75901/0/Contig75901.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75901.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/9C/DF/Contig75901//theVoid.Contig75901/0/Contig75901.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75901.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/9C/DF/Contig75901//theVoid.Contig75901/0/Contig75901.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig75902 Length: 3449 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/F9/CC/Contig75902//theVoid.Contig75902/0/Contig75902.0.all.rb -species all -dir /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/F9/CC/Contig75902//theVoid.Contig75902/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75902.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/F9/CC/Contig75902//theVoid.Contig75902/0/Contig75902.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75902.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/F9/CC/Contig75902//theVoid.Contig75902/0/Contig75902.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75902.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/F9/CC/Contig75902//theVoid.Contig75902/0/Contig75902.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75902.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/F9/CC/Contig75902//theVoid.Contig75902/0/Contig75902.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75902.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/F9/CC/Contig75902//theVoid.Contig75902/0/Contig75902.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75902.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/F9/CC/Contig75902//theVoid.Contig75902/0/Contig75902.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75902.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/F9/CC/Contig75902//theVoid.Contig75902/0/Contig75902.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75902.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/F9/CC/Contig75902//theVoid.Contig75902/0/Contig75902.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75902.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/F9/CC/Contig75902//theVoid.Contig75902/0/Contig75902.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75902.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/F9/CC/Contig75902//theVoid.Contig75902/0/Contig75902.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75902.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/F9/CC/Contig75902//theVoid.Contig75902/0/Contig75902.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75902.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/F9/CC/Contig75902//theVoid.Contig75902/0/Contig75902.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75902.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/F9/CC/Contig75902//theVoid.Contig75902/0/Contig75902.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75902.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/F9/CC/Contig75902//theVoid.Contig75902/0/Contig75902.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75902.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/F9/CC/Contig75902//theVoid.Contig75902/0/Contig75902.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75902.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/F9/CC/Contig75902//theVoid.Contig75902/0/Contig75902.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75902.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/F9/CC/Contig75902//theVoid.Contig75902/0/Contig75902.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75902.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/F9/CC/Contig75902//theVoid.Contig75902/0/Contig75902.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75902.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/F9/CC/Contig75902//theVoid.Contig75902/0/Contig75902.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75902.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/F9/CC/Contig75902//theVoid.Contig75902/0/Contig75902.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/comp25015_c0_seq1.for.1-3449.0.fasta -t /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75902.1-3449.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75902.1-3449.comp25015_c0_seq1.e.exonerate #-------------------------------# cleaning blastn... flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75902.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/F9/CC/Contig75902//theVoid.Contig75902/0/Contig75902.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75902.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/F9/CC/Contig75902//theVoid.Contig75902/0/Contig75902.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75902.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/F9/CC/Contig75902//theVoid.Contig75902/0/Contig75902.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75902.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/F9/CC/Contig75902//theVoid.Contig75902/0/Contig75902.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75902.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/F9/CC/Contig75902//theVoid.Contig75902/0/Contig75902.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75902.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/F9/CC/Contig75902//theVoid.Contig75902/0/Contig75902.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75902.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/F9/CC/Contig75902//theVoid.Contig75902/0/Contig75902.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75902.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/F9/CC/Contig75902//theVoid.Contig75902/0/Contig75902.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75902.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/F9/CC/Contig75902//theVoid.Contig75902/0/Contig75902.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75902.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/F9/CC/Contig75902//theVoid.Contig75902/0/Contig75902.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/XP_022296743%2E1.for.1-3340.0.fasta -t /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75902.1-3340.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75902.1-3340.XP_022296743%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/EKC41794%2E1.for.1-3340.0.fasta -t /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75902.1-3340.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75902.1-3340.EKC41794%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/XP_022296659%2E1.for.1-3340.0.fasta -t /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75902.1-3340.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75902.1-3340.XP_022296659%2E1.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:1 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:1 now processing 0 ...processing 0 of 3 ...processing 1 of 3 ...processing 2 of 3 flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig75905 Length: 1564 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/EE/0E/Contig75905//theVoid.Contig75905/0/Contig75905.0.all.rb -species all -dir /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/EE/0E/Contig75905//theVoid.Contig75905/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75905.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/EE/0E/Contig75905//theVoid.Contig75905/0/Contig75905.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75905.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/EE/0E/Contig75905//theVoid.Contig75905/0/Contig75905.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75905.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/EE/0E/Contig75905//theVoid.Contig75905/0/Contig75905.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75905.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/EE/0E/Contig75905//theVoid.Contig75905/0/Contig75905.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75905.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/EE/0E/Contig75905//theVoid.Contig75905/0/Contig75905.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75905.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/EE/0E/Contig75905//theVoid.Contig75905/0/Contig75905.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75905.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/EE/0E/Contig75905//theVoid.Contig75905/0/Contig75905.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75905.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/EE/0E/Contig75905//theVoid.Contig75905/0/Contig75905.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75905.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/EE/0E/Contig75905//theVoid.Contig75905/0/Contig75905.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75905.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/EE/0E/Contig75905//theVoid.Contig75905/0/Contig75905.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75905.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/EE/0E/Contig75905//theVoid.Contig75905/0/Contig75905.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75905.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/EE/0E/Contig75905//theVoid.Contig75905/0/Contig75905.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75905.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/EE/0E/Contig75905//theVoid.Contig75905/0/Contig75905.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75905.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/EE/0E/Contig75905//theVoid.Contig75905/0/Contig75905.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75905.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/EE/0E/Contig75905//theVoid.Contig75905/0/Contig75905.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75905.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/EE/0E/Contig75905//theVoid.Contig75905/0/Contig75905.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75905.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/EE/0E/Contig75905//theVoid.Contig75905/0/Contig75905.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75905.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/EE/0E/Contig75905//theVoid.Contig75905/0/Contig75905.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75905.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/EE/0E/Contig75905//theVoid.Contig75905/0/Contig75905.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75905.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/EE/0E/Contig75905//theVoid.Contig75905/0/Contig75905.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75905.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/EE/0E/Contig75905//theVoid.Contig75905/0/Contig75905.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75905.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/EE/0E/Contig75905//theVoid.Contig75905/0/Contig75905.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75905.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/EE/0E/Contig75905//theVoid.Contig75905/0/Contig75905.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75905.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/EE/0E/Contig75905//theVoid.Contig75905/0/Contig75905.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75905.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/EE/0E/Contig75905//theVoid.Contig75905/0/Contig75905.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75905.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/EE/0E/Contig75905//theVoid.Contig75905/0/Contig75905.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75905.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/EE/0E/Contig75905//theVoid.Contig75905/0/Contig75905.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75905.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/EE/0E/Contig75905//theVoid.Contig75905/0/Contig75905.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75905.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/EE/0E/Contig75905//theVoid.Contig75905/0/Contig75905.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75905.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/EE/0E/Contig75905//theVoid.Contig75905/0/Contig75905.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig75906 Length: 2193 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/80/11/Contig75906//theVoid.Contig75906/0/Contig75906.0.all.rb -species all -dir /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/80/11/Contig75906//theVoid.Contig75906/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75906.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/80/11/Contig75906//theVoid.Contig75906/0/Contig75906.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75906.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/80/11/Contig75906//theVoid.Contig75906/0/Contig75906.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75906.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/80/11/Contig75906//theVoid.Contig75906/0/Contig75906.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75906.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/80/11/Contig75906//theVoid.Contig75906/0/Contig75906.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75906.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/80/11/Contig75906//theVoid.Contig75906/0/Contig75906.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75906.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/80/11/Contig75906//theVoid.Contig75906/0/Contig75906.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75906.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/80/11/Contig75906//theVoid.Contig75906/0/Contig75906.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75906.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/80/11/Contig75906//theVoid.Contig75906/0/Contig75906.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75906.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/80/11/Contig75906//theVoid.Contig75906/0/Contig75906.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75906.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/80/11/Contig75906//theVoid.Contig75906/0/Contig75906.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75906.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/80/11/Contig75906//theVoid.Contig75906/0/Contig75906.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75906.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/80/11/Contig75906//theVoid.Contig75906/0/Contig75906.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75906.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/80/11/Contig75906//theVoid.Contig75906/0/Contig75906.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75906.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/80/11/Contig75906//theVoid.Contig75906/0/Contig75906.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75906.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/80/11/Contig75906//theVoid.Contig75906/0/Contig75906.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75906.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/80/11/Contig75906//theVoid.Contig75906/0/Contig75906.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75906.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/80/11/Contig75906//theVoid.Contig75906/0/Contig75906.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75906.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/80/11/Contig75906//theVoid.Contig75906/0/Contig75906.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75906.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/80/11/Contig75906//theVoid.Contig75906/0/Contig75906.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75906.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/80/11/Contig75906//theVoid.Contig75906/0/Contig75906.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75906.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/80/11/Contig75906//theVoid.Contig75906/0/Contig75906.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75906.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/80/11/Contig75906//theVoid.Contig75906/0/Contig75906.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75906.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/80/11/Contig75906//theVoid.Contig75906/0/Contig75906.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75906.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/80/11/Contig75906//theVoid.Contig75906/0/Contig75906.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75906.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/80/11/Contig75906//theVoid.Contig75906/0/Contig75906.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75906.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/80/11/Contig75906//theVoid.Contig75906/0/Contig75906.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75906.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/80/11/Contig75906//theVoid.Contig75906/0/Contig75906.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75906.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/80/11/Contig75906//theVoid.Contig75906/0/Contig75906.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75906.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/80/11/Contig75906//theVoid.Contig75906/0/Contig75906.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75906.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/80/11/Contig75906//theVoid.Contig75906/0/Contig75906.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig75907 Length: 1482 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/86/72/Contig75907//theVoid.Contig75907/0/Contig75907.0.all.rb -species all -dir /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/86/72/Contig75907//theVoid.Contig75907/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75907.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/86/72/Contig75907//theVoid.Contig75907/0/Contig75907.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75907.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/86/72/Contig75907//theVoid.Contig75907/0/Contig75907.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75907.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/86/72/Contig75907//theVoid.Contig75907/0/Contig75907.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75907.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/86/72/Contig75907//theVoid.Contig75907/0/Contig75907.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75907.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/86/72/Contig75907//theVoid.Contig75907/0/Contig75907.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75907.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/86/72/Contig75907//theVoid.Contig75907/0/Contig75907.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75907.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/86/72/Contig75907//theVoid.Contig75907/0/Contig75907.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75907.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/86/72/Contig75907//theVoid.Contig75907/0/Contig75907.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75907.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/86/72/Contig75907//theVoid.Contig75907/0/Contig75907.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75907.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/86/72/Contig75907//theVoid.Contig75907/0/Contig75907.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75907.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/86/72/Contig75907//theVoid.Contig75907/0/Contig75907.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75907.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/86/72/Contig75907//theVoid.Contig75907/0/Contig75907.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75907.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/86/72/Contig75907//theVoid.Contig75907/0/Contig75907.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75907.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/86/72/Contig75907//theVoid.Contig75907/0/Contig75907.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75907.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/86/72/Contig75907//theVoid.Contig75907/0/Contig75907.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75907.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/86/72/Contig75907//theVoid.Contig75907/0/Contig75907.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75907.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/86/72/Contig75907//theVoid.Contig75907/0/Contig75907.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75907.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/86/72/Contig75907//theVoid.Contig75907/0/Contig75907.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75907.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/86/72/Contig75907//theVoid.Contig75907/0/Contig75907.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75907.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/86/72/Contig75907//theVoid.Contig75907/0/Contig75907.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75907.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/86/72/Contig75907//theVoid.Contig75907/0/Contig75907.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75907.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/86/72/Contig75907//theVoid.Contig75907/0/Contig75907.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75907.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/86/72/Contig75907//theVoid.Contig75907/0/Contig75907.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75907.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/86/72/Contig75907//theVoid.Contig75907/0/Contig75907.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75907.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/86/72/Contig75907//theVoid.Contig75907/0/Contig75907.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75907.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/86/72/Contig75907//theVoid.Contig75907/0/Contig75907.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75907.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/86/72/Contig75907//theVoid.Contig75907/0/Contig75907.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75907.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/86/72/Contig75907//theVoid.Contig75907/0/Contig75907.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75907.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/86/72/Contig75907//theVoid.Contig75907/0/Contig75907.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75907.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/86/72/Contig75907//theVoid.Contig75907/0/Contig75907.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:1 hits collecting blastx reports polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/EKC38927%2E1.for.1-1037.0.fasta -t /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75907.1-1037.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75907.1-1037.EKC38927%2E1.p.exonerate #-------------------------------# cleaning blastx... flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig75908 Length: 2590 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/96/D6/Contig75908//theVoid.Contig75908/0/Contig75908.0.all.rb -species all -dir /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/96/D6/Contig75908//theVoid.Contig75908/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75908.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/96/D6/Contig75908//theVoid.Contig75908/0/Contig75908.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75908.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/96/D6/Contig75908//theVoid.Contig75908/0/Contig75908.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75908.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/96/D6/Contig75908//theVoid.Contig75908/0/Contig75908.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75908.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/96/D6/Contig75908//theVoid.Contig75908/0/Contig75908.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75908.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/96/D6/Contig75908//theVoid.Contig75908/0/Contig75908.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75908.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/96/D6/Contig75908//theVoid.Contig75908/0/Contig75908.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75908.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/96/D6/Contig75908//theVoid.Contig75908/0/Contig75908.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75908.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/96/D6/Contig75908//theVoid.Contig75908/0/Contig75908.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75908.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/96/D6/Contig75908//theVoid.Contig75908/0/Contig75908.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75908.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/96/D6/Contig75908//theVoid.Contig75908/0/Contig75908.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75908.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/96/D6/Contig75908//theVoid.Contig75908/0/Contig75908.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75908.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/96/D6/Contig75908//theVoid.Contig75908/0/Contig75908.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75908.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/96/D6/Contig75908//theVoid.Contig75908/0/Contig75908.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75908.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/96/D6/Contig75908//theVoid.Contig75908/0/Contig75908.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75908.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/96/D6/Contig75908//theVoid.Contig75908/0/Contig75908.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75908.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/96/D6/Contig75908//theVoid.Contig75908/0/Contig75908.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75908.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/96/D6/Contig75908//theVoid.Contig75908/0/Contig75908.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75908.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/96/D6/Contig75908//theVoid.Contig75908/0/Contig75908.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75908.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/96/D6/Contig75908//theVoid.Contig75908/0/Contig75908.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75908.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/96/D6/Contig75908//theVoid.Contig75908/0/Contig75908.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75908.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/96/D6/Contig75908//theVoid.Contig75908/0/Contig75908.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75908.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/96/D6/Contig75908//theVoid.Contig75908/0/Contig75908.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75908.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/96/D6/Contig75908//theVoid.Contig75908/0/Contig75908.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75908.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/96/D6/Contig75908//theVoid.Contig75908/0/Contig75908.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75908.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/96/D6/Contig75908//theVoid.Contig75908/0/Contig75908.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75908.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/96/D6/Contig75908//theVoid.Contig75908/0/Contig75908.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75908.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/96/D6/Contig75908//theVoid.Contig75908/0/Contig75908.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75908.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/96/D6/Contig75908//theVoid.Contig75908/0/Contig75908.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75908.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/96/D6/Contig75908//theVoid.Contig75908/0/Contig75908.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75908.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/96/D6/Contig75908//theVoid.Contig75908/0/Contig75908.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig75909 Length: 3029 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/A4/F5/Contig75909//theVoid.Contig75909/0/Contig75909.0.all.rb -species all -dir /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/A4/F5/Contig75909//theVoid.Contig75909/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75909.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/A4/F5/Contig75909//theVoid.Contig75909/0/Contig75909.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75909.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/A4/F5/Contig75909//theVoid.Contig75909/0/Contig75909.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75909.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/A4/F5/Contig75909//theVoid.Contig75909/0/Contig75909.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75909.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/A4/F5/Contig75909//theVoid.Contig75909/0/Contig75909.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75909.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/A4/F5/Contig75909//theVoid.Contig75909/0/Contig75909.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75909.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/A4/F5/Contig75909//theVoid.Contig75909/0/Contig75909.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75909.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/A4/F5/Contig75909//theVoid.Contig75909/0/Contig75909.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75909.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/A4/F5/Contig75909//theVoid.Contig75909/0/Contig75909.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75909.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/A4/F5/Contig75909//theVoid.Contig75909/0/Contig75909.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75909.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/A4/F5/Contig75909//theVoid.Contig75909/0/Contig75909.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75909.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/A4/F5/Contig75909//theVoid.Contig75909/0/Contig75909.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75909.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/A4/F5/Contig75909//theVoid.Contig75909/0/Contig75909.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75909.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/A4/F5/Contig75909//theVoid.Contig75909/0/Contig75909.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75909.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/A4/F5/Contig75909//theVoid.Contig75909/0/Contig75909.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75909.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/A4/F5/Contig75909//theVoid.Contig75909/0/Contig75909.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75909.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/A4/F5/Contig75909//theVoid.Contig75909/0/Contig75909.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75909.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/A4/F5/Contig75909//theVoid.Contig75909/0/Contig75909.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75909.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/A4/F5/Contig75909//theVoid.Contig75909/0/Contig75909.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75909.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/A4/F5/Contig75909//theVoid.Contig75909/0/Contig75909.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75909.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/A4/F5/Contig75909//theVoid.Contig75909/0/Contig75909.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75909.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/A4/F5/Contig75909//theVoid.Contig75909/0/Contig75909.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75909.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/A4/F5/Contig75909//theVoid.Contig75909/0/Contig75909.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75909.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/A4/F5/Contig75909//theVoid.Contig75909/0/Contig75909.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75909.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/A4/F5/Contig75909//theVoid.Contig75909/0/Contig75909.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75909.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/A4/F5/Contig75909//theVoid.Contig75909/0/Contig75909.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75909.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/A4/F5/Contig75909//theVoid.Contig75909/0/Contig75909.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75909.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/A4/F5/Contig75909//theVoid.Contig75909/0/Contig75909.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75909.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/A4/F5/Contig75909//theVoid.Contig75909/0/Contig75909.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75909.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/A4/F5/Contig75909//theVoid.Contig75909/0/Contig75909.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75909.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/A4/F5/Contig75909//theVoid.Contig75909/0/Contig75909.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig75910 Length: 2111 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/6B/E2/Contig75910//theVoid.Contig75910/0/Contig75910.0.all.rb -species all -dir /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/6B/E2/Contig75910//theVoid.Contig75910/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75910.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/6B/E2/Contig75910//theVoid.Contig75910/0/Contig75910.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75910.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/6B/E2/Contig75910//theVoid.Contig75910/0/Contig75910.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75910.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/6B/E2/Contig75910//theVoid.Contig75910/0/Contig75910.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75910.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/6B/E2/Contig75910//theVoid.Contig75910/0/Contig75910.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75910.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/6B/E2/Contig75910//theVoid.Contig75910/0/Contig75910.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75910.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/6B/E2/Contig75910//theVoid.Contig75910/0/Contig75910.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75910.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/6B/E2/Contig75910//theVoid.Contig75910/0/Contig75910.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75910.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/6B/E2/Contig75910//theVoid.Contig75910/0/Contig75910.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75910.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/6B/E2/Contig75910//theVoid.Contig75910/0/Contig75910.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/te_proteins%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75910.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/6B/E2/Contig75910//theVoid.Contig75910/0/Contig75910.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75910.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/6B/E2/Contig75910//theVoid.Contig75910/0/Contig75910.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75910.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/6B/E2/Contig75910//theVoid.Contig75910/0/Contig75910.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75910.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/6B/E2/Contig75910//theVoid.Contig75910/0/Contig75910.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75910.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/6B/E2/Contig75910//theVoid.Contig75910/0/Contig75910.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75910.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/6B/E2/Contig75910//theVoid.Contig75910/0/Contig75910.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75910.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/6B/E2/Contig75910//theVoid.Contig75910/0/Contig75910.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75910.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/6B/E2/Contig75910//theVoid.Contig75910/0/Contig75910.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75910.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/6B/E2/Contig75910//theVoid.Contig75910/0/Contig75910.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75910.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/6B/E2/Contig75910//theVoid.Contig75910/0/Contig75910.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75910.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/6B/E2/Contig75910//theVoid.Contig75910/0/Contig75910.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75910.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/6B/E2/Contig75910//theVoid.Contig75910/0/Contig75910.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75910.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/6B/E2/Contig75910//theVoid.Contig75910/0/Contig75910.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75910.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/6B/E2/Contig75910//theVoid.Contig75910/0/Contig75910.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75910.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/6B/E2/Contig75910//theVoid.Contig75910/0/Contig75910.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75910.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/6B/E2/Contig75910//theVoid.Contig75910/0/Contig75910.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75910.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/6B/E2/Contig75910//theVoid.Contig75910/0/Contig75910.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75910.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/6B/E2/Contig75910//theVoid.Contig75910/0/Contig75910.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75910.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/6B/E2/Contig75910//theVoid.Contig75910/0/Contig75910.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75910.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/6B/E2/Contig75910//theVoid.Contig75910/0/Contig75910.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.6/cctools-temp-t.6.chR4Ci/maker_NkGvZJ/0/Contig75910.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.6/Olurida_v081.maker.output/Olurida_v081_datastore/6B/E2/Contig75910//theVoid.Contig75910/0/Contig75910.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output Maker is now finished!!! Start_time: 1533681053 End_time: 1533681350 Elapsed: 297 ================================= Argument "2.53_01" isn't numeric in numeric ge (>=) at /usr/local/lib/x86_64-linux-gnu/perl/5.22.1/forks.pm line 1570. Unknown option: debug_size_limit STATUS: Parsing control files... STATUS: Processing and indexing input FASTA files... STATUS: Setting up database for any GFF3 input... A data structure will be created for you at: /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore To access files for individual sequences use the datastore index: /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_master_datastore_index.log STATUS: Now running MAKER... examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig104075 Length: 7564 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/21/00/Contig104075//theVoid.Contig104075/0/Contig104075.0.all.rb -species all -dir /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/21/00/Contig104075//theVoid.Contig104075/0 -pa 1 #-------------------------------# doing blastx repeats formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/blastprep/te_proteins%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104075.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/21/00/Contig104075//theVoid.Contig104075/0/Contig104075.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/blastprep/te_proteins%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104075.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/21/00/Contig104075//theVoid.Contig104075/0/Contig104075.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/blastprep/te_proteins%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104075.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/21/00/Contig104075//theVoid.Contig104075/0/Contig104075.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/blastprep/te_proteins%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104075.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/21/00/Contig104075//theVoid.Contig104075/0/Contig104075.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/blastprep/te_proteins%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104075.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/21/00/Contig104075//theVoid.Contig104075/0/Contig104075.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/blastprep/te_proteins%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104075.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/21/00/Contig104075//theVoid.Contig104075/0/Contig104075.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/blastprep/te_proteins%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104075.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/21/00/Contig104075//theVoid.Contig104075/0/Contig104075.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/blastprep/te_proteins%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104075.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/21/00/Contig104075//theVoid.Contig104075/0/Contig104075.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/blastprep/te_proteins%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104075.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/21/00/Contig104075//theVoid.Contig104075/0/Contig104075.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/blastprep/te_proteins%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104075.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/21/00/Contig104075//theVoid.Contig104075/0/Contig104075.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104075.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/21/00/Contig104075//theVoid.Contig104075/0/Contig104075.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104075.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/21/00/Contig104075//theVoid.Contig104075/0/Contig104075.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104075.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/21/00/Contig104075//theVoid.Contig104075/0/Contig104075.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104075.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/21/00/Contig104075//theVoid.Contig104075/0/Contig104075.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104075.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/21/00/Contig104075//theVoid.Contig104075/0/Contig104075.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104075.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/21/00/Contig104075//theVoid.Contig104075/0/Contig104075.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104075.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/21/00/Contig104075//theVoid.Contig104075/0/Contig104075.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104075.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/21/00/Contig104075//theVoid.Contig104075/0/Contig104075.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104075.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/21/00/Contig104075//theVoid.Contig104075/0/Contig104075.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104075.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/21/00/Contig104075//theVoid.Contig104075/0/Contig104075.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:7 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/comp39426_c4_seq11.for.4894-6138.0.fasta -t /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104075.4894-6138.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104075.4894-6138.comp39426_c4_seq11.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/comp39426_c4_seq3.for.4894-6138.0.fasta -t /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104075.4894-6138.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104075.4894-6138.comp39426_c4_seq3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/comp39426_c4_seq8.for.4894-6138.0.fasta -t /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104075.4894-6138.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104075.4894-6138.comp39426_c4_seq8.e.exonerate #-------------------------------# cleaning blastn... flattening EST clusters doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104075.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/21/00/Contig104075//theVoid.Contig104075/0/Contig104075.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104075.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/21/00/Contig104075//theVoid.Contig104075/0/Contig104075.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104075.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/21/00/Contig104075//theVoid.Contig104075/0/Contig104075.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:1 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104075.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/21/00/Contig104075//theVoid.Contig104075/0/Contig104075.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104075.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/21/00/Contig104075//theVoid.Contig104075/0/Contig104075.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:1 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104075.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/21/00/Contig104075//theVoid.Contig104075/0/Contig104075.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:2 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104075.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/21/00/Contig104075//theVoid.Contig104075/0/Contig104075.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:1 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104075.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/21/00/Contig104075//theVoid.Contig104075/0/Contig104075.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:1 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104075.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/21/00/Contig104075//theVoid.Contig104075/0/Contig104075.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104075.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/21/00/Contig104075//theVoid.Contig104075/0/Contig104075.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig104077 Length: 7935 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/DE/7A/Contig104077//theVoid.Contig104077/0/Contig104077.0.all.rb -species all -dir /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/DE/7A/Contig104077//theVoid.Contig104077/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104077.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/DE/7A/Contig104077//theVoid.Contig104077/0/Contig104077.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104077.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/DE/7A/Contig104077//theVoid.Contig104077/0/Contig104077.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104077.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/DE/7A/Contig104077//theVoid.Contig104077/0/Contig104077.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104077.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/DE/7A/Contig104077//theVoid.Contig104077/0/Contig104077.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104077.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/DE/7A/Contig104077//theVoid.Contig104077/0/Contig104077.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104077.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/DE/7A/Contig104077//theVoid.Contig104077/0/Contig104077.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104077.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/DE/7A/Contig104077//theVoid.Contig104077/0/Contig104077.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104077.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/DE/7A/Contig104077//theVoid.Contig104077/0/Contig104077.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104077.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/DE/7A/Contig104077//theVoid.Contig104077/0/Contig104077.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104077.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/DE/7A/Contig104077//theVoid.Contig104077/0/Contig104077.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104077.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/DE/7A/Contig104077//theVoid.Contig104077/0/Contig104077.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104077.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/DE/7A/Contig104077//theVoid.Contig104077/0/Contig104077.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104077.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/DE/7A/Contig104077//theVoid.Contig104077/0/Contig104077.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104077.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/DE/7A/Contig104077//theVoid.Contig104077/0/Contig104077.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104077.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/DE/7A/Contig104077//theVoid.Contig104077/0/Contig104077.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104077.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/DE/7A/Contig104077//theVoid.Contig104077/0/Contig104077.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104077.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/DE/7A/Contig104077//theVoid.Contig104077/0/Contig104077.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104077.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/DE/7A/Contig104077//theVoid.Contig104077/0/Contig104077.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104077.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/DE/7A/Contig104077//theVoid.Contig104077/0/Contig104077.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104077.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/DE/7A/Contig104077//theVoid.Contig104077/0/Contig104077.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/comp29491_c0_seq1.for.2791-4003.0.fasta -t /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104077.2791-4003.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104077.2791-4003.comp29491_c0_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/comp29491_c0_seq2.for.2791-4003.0.fasta -t /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104077.2791-4003.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104077.2791-4003.comp29491_c0_seq2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/comp30535_c0_seq1.for.3743-5397.0.fasta -t /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104077.3743-5397.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104077.3743-5397.comp30535_c0_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/comp30535_c0_seq2.for.3743-5335.0.fasta -t /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104077.3743-5335.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104077.3743-5335.comp30535_c0_seq2.e.exonerate #-------------------------------# cleaning blastn... flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104077.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/DE/7A/Contig104077//theVoid.Contig104077/0/Contig104077.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104077.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/DE/7A/Contig104077//theVoid.Contig104077/0/Contig104077.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:3 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104077.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/DE/7A/Contig104077//theVoid.Contig104077/0/Contig104077.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104077.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/DE/7A/Contig104077//theVoid.Contig104077/0/Contig104077.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104077.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/DE/7A/Contig104077//theVoid.Contig104077/0/Contig104077.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104077.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/DE/7A/Contig104077//theVoid.Contig104077/0/Contig104077.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:3 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104077.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/DE/7A/Contig104077//theVoid.Contig104077/0/Contig104077.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:3 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104077.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/DE/7A/Contig104077//theVoid.Contig104077/0/Contig104077.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104077.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/DE/7A/Contig104077//theVoid.Contig104077/0/Contig104077.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104077.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/DE/7A/Contig104077//theVoid.Contig104077/0/Contig104077.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:1 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/XP_022310251%2E1.for.4140-5359.0.fasta -t /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104077.4140-5359.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104077.4140-5359.XP_022310251%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/XP_022312522%2E1.for.4140-5359.0.fasta -t /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104077.4140-5359.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104077.4140-5359.XP_022312522%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/XP_022312523%2E1.for.4140-5359.0.fasta -t /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104077.4140-5359.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104077.4140-5359.XP_022312523%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/XP_022294606%2E1.for.4140-5359.0.fasta -t /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104077.4140-5359.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104077.4140-5359.XP_022294606%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/XP_022294607%2E1.for.4140-5359.0.fasta -t /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104077.4140-5359.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104077.4140-5359.XP_022294607%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/XP_022310250%2E1.for.4140-5359.0.fasta -t /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104077.4140-5359.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104077.4140-5359.XP_022310250%2E1.p.exonerate #-------------------------------# cleaning blastx... flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig104078 Length: 7475 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/2E/1A/Contig104078//theVoid.Contig104078/0/Contig104078.0.all.rb -species all -dir /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/2E/1A/Contig104078//theVoid.Contig104078/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104078.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/2E/1A/Contig104078//theVoid.Contig104078/0/Contig104078.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104078.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/2E/1A/Contig104078//theVoid.Contig104078/0/Contig104078.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104078.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/2E/1A/Contig104078//theVoid.Contig104078/0/Contig104078.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104078.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/2E/1A/Contig104078//theVoid.Contig104078/0/Contig104078.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104078.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/2E/1A/Contig104078//theVoid.Contig104078/0/Contig104078.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104078.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/2E/1A/Contig104078//theVoid.Contig104078/0/Contig104078.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104078.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/2E/1A/Contig104078//theVoid.Contig104078/0/Contig104078.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104078.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/2E/1A/Contig104078//theVoid.Contig104078/0/Contig104078.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104078.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/2E/1A/Contig104078//theVoid.Contig104078/0/Contig104078.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104078.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/2E/1A/Contig104078//theVoid.Contig104078/0/Contig104078.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104078.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/2E/1A/Contig104078//theVoid.Contig104078/0/Contig104078.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104078.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/2E/1A/Contig104078//theVoid.Contig104078/0/Contig104078.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104078.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/2E/1A/Contig104078//theVoid.Contig104078/0/Contig104078.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104078.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/2E/1A/Contig104078//theVoid.Contig104078/0/Contig104078.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104078.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/2E/1A/Contig104078//theVoid.Contig104078/0/Contig104078.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104078.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/2E/1A/Contig104078//theVoid.Contig104078/0/Contig104078.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104078.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/2E/1A/Contig104078//theVoid.Contig104078/0/Contig104078.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104078.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/2E/1A/Contig104078//theVoid.Contig104078/0/Contig104078.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104078.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/2E/1A/Contig104078//theVoid.Contig104078/0/Contig104078.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104078.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/2E/1A/Contig104078//theVoid.Contig104078/0/Contig104078.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104078.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/2E/1A/Contig104078//theVoid.Contig104078/0/Contig104078.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104078.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/2E/1A/Contig104078//theVoid.Contig104078/0/Contig104078.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104078.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/2E/1A/Contig104078//theVoid.Contig104078/0/Contig104078.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104078.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/2E/1A/Contig104078//theVoid.Contig104078/0/Contig104078.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104078.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/2E/1A/Contig104078//theVoid.Contig104078/0/Contig104078.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104078.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/2E/1A/Contig104078//theVoid.Contig104078/0/Contig104078.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104078.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/2E/1A/Contig104078//theVoid.Contig104078/0/Contig104078.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104078.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/2E/1A/Contig104078//theVoid.Contig104078/0/Contig104078.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104078.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/2E/1A/Contig104078//theVoid.Contig104078/0/Contig104078.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104078.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/2E/1A/Contig104078//theVoid.Contig104078/0/Contig104078.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig104079 Length: 2337 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/A3/2A/Contig104079//theVoid.Contig104079/0/Contig104079.0.all.rb -species all -dir /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/A3/2A/Contig104079//theVoid.Contig104079/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104079.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/A3/2A/Contig104079//theVoid.Contig104079/0/Contig104079.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104079.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/A3/2A/Contig104079//theVoid.Contig104079/0/Contig104079.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104079.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/A3/2A/Contig104079//theVoid.Contig104079/0/Contig104079.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104079.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/A3/2A/Contig104079//theVoid.Contig104079/0/Contig104079.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104079.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/A3/2A/Contig104079//theVoid.Contig104079/0/Contig104079.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104079.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/A3/2A/Contig104079//theVoid.Contig104079/0/Contig104079.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104079.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/A3/2A/Contig104079//theVoid.Contig104079/0/Contig104079.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104079.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/A3/2A/Contig104079//theVoid.Contig104079/0/Contig104079.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104079.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/A3/2A/Contig104079//theVoid.Contig104079/0/Contig104079.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104079.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/A3/2A/Contig104079//theVoid.Contig104079/0/Contig104079.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104079.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/A3/2A/Contig104079//theVoid.Contig104079/0/Contig104079.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104079.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/A3/2A/Contig104079//theVoid.Contig104079/0/Contig104079.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104079.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/A3/2A/Contig104079//theVoid.Contig104079/0/Contig104079.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104079.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/A3/2A/Contig104079//theVoid.Contig104079/0/Contig104079.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104079.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/A3/2A/Contig104079//theVoid.Contig104079/0/Contig104079.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104079.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/A3/2A/Contig104079//theVoid.Contig104079/0/Contig104079.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104079.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/A3/2A/Contig104079//theVoid.Contig104079/0/Contig104079.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104079.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/A3/2A/Contig104079//theVoid.Contig104079/0/Contig104079.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104079.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/A3/2A/Contig104079//theVoid.Contig104079/0/Contig104079.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104079.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/A3/2A/Contig104079//theVoid.Contig104079/0/Contig104079.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104079.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/A3/2A/Contig104079//theVoid.Contig104079/0/Contig104079.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104079.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/A3/2A/Contig104079//theVoid.Contig104079/0/Contig104079.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104079.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/A3/2A/Contig104079//theVoid.Contig104079/0/Contig104079.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104079.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/A3/2A/Contig104079//theVoid.Contig104079/0/Contig104079.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104079.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/A3/2A/Contig104079//theVoid.Contig104079/0/Contig104079.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104079.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/A3/2A/Contig104079//theVoid.Contig104079/0/Contig104079.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104079.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/A3/2A/Contig104079//theVoid.Contig104079/0/Contig104079.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104079.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/A3/2A/Contig104079//theVoid.Contig104079/0/Contig104079.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104079.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/A3/2A/Contig104079//theVoid.Contig104079/0/Contig104079.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104079.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/A3/2A/Contig104079//theVoid.Contig104079/0/Contig104079.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig104080 Length: 2820 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/36/B3/Contig104080//theVoid.Contig104080/0/Contig104080.0.all.rb -species all -dir /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/36/B3/Contig104080//theVoid.Contig104080/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104080.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/36/B3/Contig104080//theVoid.Contig104080/0/Contig104080.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104080.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/36/B3/Contig104080//theVoid.Contig104080/0/Contig104080.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104080.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/36/B3/Contig104080//theVoid.Contig104080/0/Contig104080.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104080.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/36/B3/Contig104080//theVoid.Contig104080/0/Contig104080.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104080.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/36/B3/Contig104080//theVoid.Contig104080/0/Contig104080.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104080.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/36/B3/Contig104080//theVoid.Contig104080/0/Contig104080.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104080.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/36/B3/Contig104080//theVoid.Contig104080/0/Contig104080.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104080.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/36/B3/Contig104080//theVoid.Contig104080/0/Contig104080.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104080.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/36/B3/Contig104080//theVoid.Contig104080/0/Contig104080.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104080.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/36/B3/Contig104080//theVoid.Contig104080/0/Contig104080.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104080.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/36/B3/Contig104080//theVoid.Contig104080/0/Contig104080.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104080.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/36/B3/Contig104080//theVoid.Contig104080/0/Contig104080.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104080.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/36/B3/Contig104080//theVoid.Contig104080/0/Contig104080.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104080.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/36/B3/Contig104080//theVoid.Contig104080/0/Contig104080.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104080.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/36/B3/Contig104080//theVoid.Contig104080/0/Contig104080.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104080.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/36/B3/Contig104080//theVoid.Contig104080/0/Contig104080.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104080.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/36/B3/Contig104080//theVoid.Contig104080/0/Contig104080.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104080.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/36/B3/Contig104080//theVoid.Contig104080/0/Contig104080.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104080.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/36/B3/Contig104080//theVoid.Contig104080/0/Contig104080.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104080.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/36/B3/Contig104080//theVoid.Contig104080/0/Contig104080.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/comp25310_c0_seq1.for.1-710.0.fasta -t /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104080.1-710.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104080.1-710.comp25310_c0_seq1.e.exonerate #-------------------------------# cleaning blastn... cleaning clusters.... total clusters:1 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104080.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/36/B3/Contig104080//theVoid.Contig104080/0/Contig104080.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104080.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/36/B3/Contig104080//theVoid.Contig104080/0/Contig104080.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104080.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/36/B3/Contig104080//theVoid.Contig104080/0/Contig104080.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104080.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/36/B3/Contig104080//theVoid.Contig104080/0/Contig104080.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104080.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/36/B3/Contig104080//theVoid.Contig104080/0/Contig104080.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104080.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/36/B3/Contig104080//theVoid.Contig104080/0/Contig104080.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104080.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/36/B3/Contig104080//theVoid.Contig104080/0/Contig104080.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104080.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/36/B3/Contig104080//theVoid.Contig104080/0/Contig104080.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104080.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/36/B3/Contig104080//theVoid.Contig104080/0/Contig104080.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104080.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/36/B3/Contig104080//theVoid.Contig104080/0/Contig104080.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig104081 Length: 5373 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/E5/55/Contig104081//theVoid.Contig104081/0/Contig104081.0.all.rb -species all -dir /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/E5/55/Contig104081//theVoid.Contig104081/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104081.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/E5/55/Contig104081//theVoid.Contig104081/0/Contig104081.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104081.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/E5/55/Contig104081//theVoid.Contig104081/0/Contig104081.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104081.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/E5/55/Contig104081//theVoid.Contig104081/0/Contig104081.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104081.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/E5/55/Contig104081//theVoid.Contig104081/0/Contig104081.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104081.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/E5/55/Contig104081//theVoid.Contig104081/0/Contig104081.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104081.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/E5/55/Contig104081//theVoid.Contig104081/0/Contig104081.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104081.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/E5/55/Contig104081//theVoid.Contig104081/0/Contig104081.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104081.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/E5/55/Contig104081//theVoid.Contig104081/0/Contig104081.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104081.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/E5/55/Contig104081//theVoid.Contig104081/0/Contig104081.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104081.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/E5/55/Contig104081//theVoid.Contig104081/0/Contig104081.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104081.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/E5/55/Contig104081//theVoid.Contig104081/0/Contig104081.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104081.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/E5/55/Contig104081//theVoid.Contig104081/0/Contig104081.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104081.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/E5/55/Contig104081//theVoid.Contig104081/0/Contig104081.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104081.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/E5/55/Contig104081//theVoid.Contig104081/0/Contig104081.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104081.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/E5/55/Contig104081//theVoid.Contig104081/0/Contig104081.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104081.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/E5/55/Contig104081//theVoid.Contig104081/0/Contig104081.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104081.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/E5/55/Contig104081//theVoid.Contig104081/0/Contig104081.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:7 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104081.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/E5/55/Contig104081//theVoid.Contig104081/0/Contig104081.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:8 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104081.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/E5/55/Contig104081//theVoid.Contig104081/0/Contig104081.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104081.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/E5/55/Contig104081//theVoid.Contig104081/0/Contig104081.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/comp33799_c0_seq1.for.1717-2705.0.fasta -t /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104081.1717-2705.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104081.1717-2705.comp33799_c0_seq1.e.exonerate #-------------------------------# cleaning blastn... cleaning clusters.... total clusters:1 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104081.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/E5/55/Contig104081//theVoid.Contig104081/0/Contig104081.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104081.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/E5/55/Contig104081//theVoid.Contig104081/0/Contig104081.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104081.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/E5/55/Contig104081//theVoid.Contig104081/0/Contig104081.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104081.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/E5/55/Contig104081//theVoid.Contig104081/0/Contig104081.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104081.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/E5/55/Contig104081//theVoid.Contig104081/0/Contig104081.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104081.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/E5/55/Contig104081//theVoid.Contig104081/0/Contig104081.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104081.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/E5/55/Contig104081//theVoid.Contig104081/0/Contig104081.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104081.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/E5/55/Contig104081//theVoid.Contig104081/0/Contig104081.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104081.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/E5/55/Contig104081//theVoid.Contig104081/0/Contig104081.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104081.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/E5/55/Contig104081//theVoid.Contig104081/0/Contig104081.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig104082 Length: 1439 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/E3/43/Contig104082//theVoid.Contig104082/0/Contig104082.0.all.rb -species all -dir /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/E3/43/Contig104082//theVoid.Contig104082/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104082.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/E3/43/Contig104082//theVoid.Contig104082/0/Contig104082.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104082.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/E3/43/Contig104082//theVoid.Contig104082/0/Contig104082.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104082.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/E3/43/Contig104082//theVoid.Contig104082/0/Contig104082.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104082.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/E3/43/Contig104082//theVoid.Contig104082/0/Contig104082.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104082.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/E3/43/Contig104082//theVoid.Contig104082/0/Contig104082.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104082.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/E3/43/Contig104082//theVoid.Contig104082/0/Contig104082.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104082.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/E3/43/Contig104082//theVoid.Contig104082/0/Contig104082.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104082.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/E3/43/Contig104082//theVoid.Contig104082/0/Contig104082.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104082.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/E3/43/Contig104082//theVoid.Contig104082/0/Contig104082.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104082.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/E3/43/Contig104082//theVoid.Contig104082/0/Contig104082.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104082.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/E3/43/Contig104082//theVoid.Contig104082/0/Contig104082.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104082.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/E3/43/Contig104082//theVoid.Contig104082/0/Contig104082.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104082.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/E3/43/Contig104082//theVoid.Contig104082/0/Contig104082.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104082.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/E3/43/Contig104082//theVoid.Contig104082/0/Contig104082.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104082.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/E3/43/Contig104082//theVoid.Contig104082/0/Contig104082.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104082.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/E3/43/Contig104082//theVoid.Contig104082/0/Contig104082.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104082.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/E3/43/Contig104082//theVoid.Contig104082/0/Contig104082.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104082.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/E3/43/Contig104082//theVoid.Contig104082/0/Contig104082.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104082.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/E3/43/Contig104082//theVoid.Contig104082/0/Contig104082.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104082.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/E3/43/Contig104082//theVoid.Contig104082/0/Contig104082.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104082.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/E3/43/Contig104082//theVoid.Contig104082/0/Contig104082.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104082.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/E3/43/Contig104082//theVoid.Contig104082/0/Contig104082.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104082.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/E3/43/Contig104082//theVoid.Contig104082/0/Contig104082.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104082.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/E3/43/Contig104082//theVoid.Contig104082/0/Contig104082.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104082.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/E3/43/Contig104082//theVoid.Contig104082/0/Contig104082.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104082.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/E3/43/Contig104082//theVoid.Contig104082/0/Contig104082.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104082.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/E3/43/Contig104082//theVoid.Contig104082/0/Contig104082.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104082.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/E3/43/Contig104082//theVoid.Contig104082/0/Contig104082.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104082.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/E3/43/Contig104082//theVoid.Contig104082/0/Contig104082.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104082.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/E3/43/Contig104082//theVoid.Contig104082/0/Contig104082.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig104083 Length: 2261 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/05/20/Contig104083//theVoid.Contig104083/0/Contig104083.0.all.rb -species all -dir /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/05/20/Contig104083//theVoid.Contig104083/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104083.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/05/20/Contig104083//theVoid.Contig104083/0/Contig104083.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104083.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/05/20/Contig104083//theVoid.Contig104083/0/Contig104083.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104083.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/05/20/Contig104083//theVoid.Contig104083/0/Contig104083.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104083.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/05/20/Contig104083//theVoid.Contig104083/0/Contig104083.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104083.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/05/20/Contig104083//theVoid.Contig104083/0/Contig104083.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104083.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/05/20/Contig104083//theVoid.Contig104083/0/Contig104083.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104083.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/05/20/Contig104083//theVoid.Contig104083/0/Contig104083.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104083.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/05/20/Contig104083//theVoid.Contig104083/0/Contig104083.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104083.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/05/20/Contig104083//theVoid.Contig104083/0/Contig104083.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104083.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/05/20/Contig104083//theVoid.Contig104083/0/Contig104083.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104083.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/05/20/Contig104083//theVoid.Contig104083/0/Contig104083.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104083.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/05/20/Contig104083//theVoid.Contig104083/0/Contig104083.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104083.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/05/20/Contig104083//theVoid.Contig104083/0/Contig104083.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104083.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/05/20/Contig104083//theVoid.Contig104083/0/Contig104083.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104083.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/05/20/Contig104083//theVoid.Contig104083/0/Contig104083.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104083.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/05/20/Contig104083//theVoid.Contig104083/0/Contig104083.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104083.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/05/20/Contig104083//theVoid.Contig104083/0/Contig104083.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104083.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/05/20/Contig104083//theVoid.Contig104083/0/Contig104083.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104083.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/05/20/Contig104083//theVoid.Contig104083/0/Contig104083.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104083.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/05/20/Contig104083//theVoid.Contig104083/0/Contig104083.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104083.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/05/20/Contig104083//theVoid.Contig104083/0/Contig104083.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104083.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/05/20/Contig104083//theVoid.Contig104083/0/Contig104083.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104083.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/05/20/Contig104083//theVoid.Contig104083/0/Contig104083.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104083.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/05/20/Contig104083//theVoid.Contig104083/0/Contig104083.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104083.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/05/20/Contig104083//theVoid.Contig104083/0/Contig104083.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104083.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/05/20/Contig104083//theVoid.Contig104083/0/Contig104083.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104083.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/05/20/Contig104083//theVoid.Contig104083/0/Contig104083.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104083.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/05/20/Contig104083//theVoid.Contig104083/0/Contig104083.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104083.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/05/20/Contig104083//theVoid.Contig104083/0/Contig104083.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104083.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/05/20/Contig104083//theVoid.Contig104083/0/Contig104083.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig104084 Length: 2047 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/36/CE/Contig104084//theVoid.Contig104084/0/Contig104084.0.all.rb -species all -dir /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/36/CE/Contig104084//theVoid.Contig104084/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104084.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/36/CE/Contig104084//theVoid.Contig104084/0/Contig104084.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104084.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/36/CE/Contig104084//theVoid.Contig104084/0/Contig104084.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104084.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/36/CE/Contig104084//theVoid.Contig104084/0/Contig104084.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104084.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/36/CE/Contig104084//theVoid.Contig104084/0/Contig104084.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104084.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/36/CE/Contig104084//theVoid.Contig104084/0/Contig104084.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104084.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/36/CE/Contig104084//theVoid.Contig104084/0/Contig104084.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104084.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/36/CE/Contig104084//theVoid.Contig104084/0/Contig104084.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104084.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/36/CE/Contig104084//theVoid.Contig104084/0/Contig104084.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104084.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/36/CE/Contig104084//theVoid.Contig104084/0/Contig104084.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104084.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/36/CE/Contig104084//theVoid.Contig104084/0/Contig104084.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104084.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/36/CE/Contig104084//theVoid.Contig104084/0/Contig104084.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104084.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/36/CE/Contig104084//theVoid.Contig104084/0/Contig104084.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104084.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/36/CE/Contig104084//theVoid.Contig104084/0/Contig104084.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104084.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/36/CE/Contig104084//theVoid.Contig104084/0/Contig104084.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104084.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/36/CE/Contig104084//theVoid.Contig104084/0/Contig104084.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104084.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/36/CE/Contig104084//theVoid.Contig104084/0/Contig104084.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104084.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/36/CE/Contig104084//theVoid.Contig104084/0/Contig104084.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104084.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/36/CE/Contig104084//theVoid.Contig104084/0/Contig104084.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104084.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/36/CE/Contig104084//theVoid.Contig104084/0/Contig104084.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104084.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/36/CE/Contig104084//theVoid.Contig104084/0/Contig104084.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104084.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/36/CE/Contig104084//theVoid.Contig104084/0/Contig104084.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104084.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/36/CE/Contig104084//theVoid.Contig104084/0/Contig104084.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104084.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/36/CE/Contig104084//theVoid.Contig104084/0/Contig104084.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104084.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/36/CE/Contig104084//theVoid.Contig104084/0/Contig104084.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104084.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/36/CE/Contig104084//theVoid.Contig104084/0/Contig104084.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104084.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/36/CE/Contig104084//theVoid.Contig104084/0/Contig104084.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104084.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/36/CE/Contig104084//theVoid.Contig104084/0/Contig104084.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104084.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/36/CE/Contig104084//theVoid.Contig104084/0/Contig104084.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104084.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/36/CE/Contig104084//theVoid.Contig104084/0/Contig104084.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104084.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/36/CE/Contig104084//theVoid.Contig104084/0/Contig104084.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig104085 Length: 4447 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/42/25/Contig104085//theVoid.Contig104085/0/Contig104085.0.all.rb -species all -dir /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/42/25/Contig104085//theVoid.Contig104085/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104085.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/42/25/Contig104085//theVoid.Contig104085/0/Contig104085.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104085.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/42/25/Contig104085//theVoid.Contig104085/0/Contig104085.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104085.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/42/25/Contig104085//theVoid.Contig104085/0/Contig104085.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104085.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/42/25/Contig104085//theVoid.Contig104085/0/Contig104085.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104085.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/42/25/Contig104085//theVoid.Contig104085/0/Contig104085.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104085.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/42/25/Contig104085//theVoid.Contig104085/0/Contig104085.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104085.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/42/25/Contig104085//theVoid.Contig104085/0/Contig104085.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104085.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/42/25/Contig104085//theVoid.Contig104085/0/Contig104085.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104085.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/42/25/Contig104085//theVoid.Contig104085/0/Contig104085.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/te_proteins%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104085.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/42/25/Contig104085//theVoid.Contig104085/0/Contig104085.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104085.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/42/25/Contig104085//theVoid.Contig104085/0/Contig104085.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104085.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/42/25/Contig104085//theVoid.Contig104085/0/Contig104085.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104085.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/42/25/Contig104085//theVoid.Contig104085/0/Contig104085.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104085.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/42/25/Contig104085//theVoid.Contig104085/0/Contig104085.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104085.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/42/25/Contig104085//theVoid.Contig104085/0/Contig104085.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104085.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/42/25/Contig104085//theVoid.Contig104085/0/Contig104085.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104085.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/42/25/Contig104085//theVoid.Contig104085/0/Contig104085.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104085.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/42/25/Contig104085//theVoid.Contig104085/0/Contig104085.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104085.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/42/25/Contig104085//theVoid.Contig104085/0/Contig104085.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104085.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/42/25/Contig104085//theVoid.Contig104085/0/Contig104085.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/comp30289_c0_seq1.for.1-797.0.fasta -t /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104085.1-797.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104085.1-797.comp30289_c0_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/comp30289_c1_seq1.for.113-2977.0.fasta -t /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104085.113-2977.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104085.113-2977.comp30289_c1_seq1.e.exonerate #-------------------------------# cleaning blastn... cleaning clusters.... total clusters:1 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104085.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/42/25/Contig104085//theVoid.Contig104085/0/Contig104085.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104085.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/42/25/Contig104085//theVoid.Contig104085/0/Contig104085.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104085.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/42/25/Contig104085//theVoid.Contig104085/0/Contig104085.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104085.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/42/25/Contig104085//theVoid.Contig104085/0/Contig104085.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104085.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/42/25/Contig104085//theVoid.Contig104085/0/Contig104085.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:3 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104085.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/42/25/Contig104085//theVoid.Contig104085/0/Contig104085.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104085.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/42/25/Contig104085//theVoid.Contig104085/0/Contig104085.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104085.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/42/25/Contig104085//theVoid.Contig104085/0/Contig104085.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104085.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/42/25/Contig104085//theVoid.Contig104085/0/Contig104085.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104085.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.8/Olurida_v081.maker.output/Olurida_v081_datastore/42/25/Contig104085//theVoid.Contig104085/0/Contig104085.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/XP_022333623%2E1.for.871-2830.0.fasta -t /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104085.871-2830.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104085.871-2830.XP_022333623%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/EKC30554%2E1.for.871-2830.0.fasta -t /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104085.871-2830.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104085.871-2830.EKC30554%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/EKC30556%2E1.for.1485-2830.0.fasta -t /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104085.1485-2830.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104085.1485-2830.EKC30556%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/XP_022334499%2E1.for.871-2830.0.fasta -t /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104085.871-2830.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-9710/t.8/cctools-temp-t.8.a0vI0B/maker_ge2_Wo/0/Contig104085.871-2830.XP_022334499%2E1.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:1 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:1 now processing 0 ...processing 0 of 4 ...processing 1 of 4 ...processing 2 of 4 ...processing 3 of 4 flattening protein clusters prepare section files processing the chunk divide processing contig output Maker is now finished!!! Start_time: 1533681053 End_time: 1533681367 Elapsed: 314 ================================= Argument "2.53_01" isn't numeric in numeric ge (>=) at /usr/local/lib/x86_64-linux-gnu/perl/5.22.1/forks.pm line 1570. Unknown option: debug_size_limit STATUS: Parsing control files... STATUS: Processing and indexing input FASTA files... STATUS: Setting up database for any GFF3 input... A data structure will be created for you at: /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore To access files for individual sequences use the datastore index: /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_master_datastore_index.log STATUS: Now running MAKER... examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig122248 Length: 4196 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/93/C7/Contig122248//theVoid.Contig122248/0/Contig122248.0.all.rb -species all -dir /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/93/C7/Contig122248//theVoid.Contig122248/0 -pa 1 #-------------------------------# doing blastx repeats formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/blastprep/te_proteins%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122248.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/93/C7/Contig122248//theVoid.Contig122248/0/Contig122248.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/blastprep/te_proteins%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122248.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/93/C7/Contig122248//theVoid.Contig122248/0/Contig122248.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/blastprep/te_proteins%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122248.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/93/C7/Contig122248//theVoid.Contig122248/0/Contig122248.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/blastprep/te_proteins%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122248.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/93/C7/Contig122248//theVoid.Contig122248/0/Contig122248.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/blastprep/te_proteins%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122248.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/93/C7/Contig122248//theVoid.Contig122248/0/Contig122248.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/blastprep/te_proteins%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122248.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/93/C7/Contig122248//theVoid.Contig122248/0/Contig122248.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/blastprep/te_proteins%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122248.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/93/C7/Contig122248//theVoid.Contig122248/0/Contig122248.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/blastprep/te_proteins%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122248.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/93/C7/Contig122248//theVoid.Contig122248/0/Contig122248.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/blastprep/te_proteins%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122248.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/93/C7/Contig122248//theVoid.Contig122248/0/Contig122248.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/blastprep/te_proteins%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122248.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/93/C7/Contig122248//theVoid.Contig122248/0/Contig122248.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122248.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/93/C7/Contig122248//theVoid.Contig122248/0/Contig122248.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122248.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/93/C7/Contig122248//theVoid.Contig122248/0/Contig122248.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122248.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/93/C7/Contig122248//theVoid.Contig122248/0/Contig122248.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122248.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/93/C7/Contig122248//theVoid.Contig122248/0/Contig122248.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122248.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/93/C7/Contig122248//theVoid.Contig122248/0/Contig122248.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122248.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/93/C7/Contig122248//theVoid.Contig122248/0/Contig122248.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122248.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/93/C7/Contig122248//theVoid.Contig122248/0/Contig122248.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122248.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/93/C7/Contig122248//theVoid.Contig122248/0/Contig122248.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122248.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/93/C7/Contig122248//theVoid.Contig122248/0/Contig122248.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122248.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/93/C7/Contig122248//theVoid.Contig122248/0/Contig122248.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:4 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/comp12215_c0_seq1.for.1458-2574.0.fasta -t /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122248.1458-2574.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122248.1458-2574.comp12215_c0_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/comp40596_c0_seq21.for.3214-4196.0.fasta -t /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122248.3214-4196.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122248.3214-4196.comp40596_c0_seq21.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/comp40596_c0_seq41.for.3214-4196.0.fasta -t /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122248.3214-4196.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122248.3214-4196.comp40596_c0_seq41.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/comp40596_c0_seq32.for.3214-4196.0.fasta -t /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122248.3214-4196.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122248.3214-4196.comp40596_c0_seq32.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/comp40596_c0_seq23.for.3214-4196.0.fasta -t /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122248.3214-4196.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122248.3214-4196.comp40596_c0_seq23.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/comp40596_c0_seq24.for.3214-4196.0.fasta -t /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122248.3214-4196.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122248.3214-4196.comp40596_c0_seq24.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/comp40596_c0_seq6.for.3214-4196.0.fasta -t /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122248.3214-4196.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122248.3214-4196.comp40596_c0_seq6.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/comp40596_c0_seq7.for.3214-4196.0.fasta -t /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122248.3214-4196.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122248.3214-4196.comp40596_c0_seq7.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/comp40596_c0_seq30.for.3214-4196.0.fasta -t /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122248.3214-4196.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122248.3214-4196.comp40596_c0_seq30.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:3 now processing 0 total clusters:3 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:3 now processing 0 flattening EST clusters doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122248.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/93/C7/Contig122248//theVoid.Contig122248/0/Contig122248.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122248.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/93/C7/Contig122248//theVoid.Contig122248/0/Contig122248.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122248.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/93/C7/Contig122248//theVoid.Contig122248/0/Contig122248.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122248.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/93/C7/Contig122248//theVoid.Contig122248/0/Contig122248.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122248.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/93/C7/Contig122248//theVoid.Contig122248/0/Contig122248.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122248.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/93/C7/Contig122248//theVoid.Contig122248/0/Contig122248.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122248.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/93/C7/Contig122248//theVoid.Contig122248/0/Contig122248.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122248.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/93/C7/Contig122248//theVoid.Contig122248/0/Contig122248.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122248.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/93/C7/Contig122248//theVoid.Contig122248/0/Contig122248.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122248.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/93/C7/Contig122248//theVoid.Contig122248/0/Contig122248.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig122249 Length: 1372 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/0C/52/Contig122249//theVoid.Contig122249/0/Contig122249.0.all.rb -species all -dir /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/0C/52/Contig122249//theVoid.Contig122249/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122249.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/0C/52/Contig122249//theVoid.Contig122249/0/Contig122249.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122249.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/0C/52/Contig122249//theVoid.Contig122249/0/Contig122249.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122249.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/0C/52/Contig122249//theVoid.Contig122249/0/Contig122249.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122249.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/0C/52/Contig122249//theVoid.Contig122249/0/Contig122249.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122249.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/0C/52/Contig122249//theVoid.Contig122249/0/Contig122249.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122249.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/0C/52/Contig122249//theVoid.Contig122249/0/Contig122249.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122249.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/0C/52/Contig122249//theVoid.Contig122249/0/Contig122249.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122249.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/0C/52/Contig122249//theVoid.Contig122249/0/Contig122249.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122249.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/0C/52/Contig122249//theVoid.Contig122249/0/Contig122249.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122249.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/0C/52/Contig122249//theVoid.Contig122249/0/Contig122249.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122249.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/0C/52/Contig122249//theVoid.Contig122249/0/Contig122249.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122249.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/0C/52/Contig122249//theVoid.Contig122249/0/Contig122249.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122249.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/0C/52/Contig122249//theVoid.Contig122249/0/Contig122249.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122249.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/0C/52/Contig122249//theVoid.Contig122249/0/Contig122249.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122249.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/0C/52/Contig122249//theVoid.Contig122249/0/Contig122249.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122249.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/0C/52/Contig122249//theVoid.Contig122249/0/Contig122249.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122249.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/0C/52/Contig122249//theVoid.Contig122249/0/Contig122249.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122249.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/0C/52/Contig122249//theVoid.Contig122249/0/Contig122249.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122249.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/0C/52/Contig122249//theVoid.Contig122249/0/Contig122249.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122249.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/0C/52/Contig122249//theVoid.Contig122249/0/Contig122249.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122249.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/0C/52/Contig122249//theVoid.Contig122249/0/Contig122249.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122249.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/0C/52/Contig122249//theVoid.Contig122249/0/Contig122249.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122249.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/0C/52/Contig122249//theVoid.Contig122249/0/Contig122249.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122249.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/0C/52/Contig122249//theVoid.Contig122249/0/Contig122249.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122249.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/0C/52/Contig122249//theVoid.Contig122249/0/Contig122249.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122249.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/0C/52/Contig122249//theVoid.Contig122249/0/Contig122249.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122249.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/0C/52/Contig122249//theVoid.Contig122249/0/Contig122249.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122249.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/0C/52/Contig122249//theVoid.Contig122249/0/Contig122249.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122249.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/0C/52/Contig122249//theVoid.Contig122249/0/Contig122249.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122249.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/0C/52/Contig122249//theVoid.Contig122249/0/Contig122249.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig122251 Length: 1444 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/AD/65/Contig122251//theVoid.Contig122251/0/Contig122251.0.all.rb -species all -dir /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/AD/65/Contig122251//theVoid.Contig122251/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122251.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/AD/65/Contig122251//theVoid.Contig122251/0/Contig122251.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122251.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/AD/65/Contig122251//theVoid.Contig122251/0/Contig122251.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122251.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/AD/65/Contig122251//theVoid.Contig122251/0/Contig122251.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122251.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/AD/65/Contig122251//theVoid.Contig122251/0/Contig122251.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122251.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/AD/65/Contig122251//theVoid.Contig122251/0/Contig122251.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122251.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/AD/65/Contig122251//theVoid.Contig122251/0/Contig122251.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122251.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/AD/65/Contig122251//theVoid.Contig122251/0/Contig122251.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122251.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/AD/65/Contig122251//theVoid.Contig122251/0/Contig122251.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122251.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/AD/65/Contig122251//theVoid.Contig122251/0/Contig122251.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122251.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/AD/65/Contig122251//theVoid.Contig122251/0/Contig122251.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122251.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/AD/65/Contig122251//theVoid.Contig122251/0/Contig122251.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122251.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/AD/65/Contig122251//theVoid.Contig122251/0/Contig122251.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122251.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/AD/65/Contig122251//theVoid.Contig122251/0/Contig122251.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122251.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/AD/65/Contig122251//theVoid.Contig122251/0/Contig122251.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122251.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/AD/65/Contig122251//theVoid.Contig122251/0/Contig122251.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122251.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/AD/65/Contig122251//theVoid.Contig122251/0/Contig122251.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122251.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/AD/65/Contig122251//theVoid.Contig122251/0/Contig122251.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122251.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/AD/65/Contig122251//theVoid.Contig122251/0/Contig122251.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122251.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/AD/65/Contig122251//theVoid.Contig122251/0/Contig122251.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122251.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/AD/65/Contig122251//theVoid.Contig122251/0/Contig122251.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122251.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/AD/65/Contig122251//theVoid.Contig122251/0/Contig122251.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122251.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/AD/65/Contig122251//theVoid.Contig122251/0/Contig122251.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122251.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/AD/65/Contig122251//theVoid.Contig122251/0/Contig122251.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122251.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/AD/65/Contig122251//theVoid.Contig122251/0/Contig122251.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122251.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/AD/65/Contig122251//theVoid.Contig122251/0/Contig122251.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122251.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/AD/65/Contig122251//theVoid.Contig122251/0/Contig122251.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122251.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/AD/65/Contig122251//theVoid.Contig122251/0/Contig122251.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122251.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/AD/65/Contig122251//theVoid.Contig122251/0/Contig122251.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122251.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/AD/65/Contig122251//theVoid.Contig122251/0/Contig122251.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122251.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/AD/65/Contig122251//theVoid.Contig122251/0/Contig122251.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig122252 Length: 3634 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/5C/11/Contig122252//theVoid.Contig122252/0/Contig122252.0.all.rb -species all -dir /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/5C/11/Contig122252//theVoid.Contig122252/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122252.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/5C/11/Contig122252//theVoid.Contig122252/0/Contig122252.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122252.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/5C/11/Contig122252//theVoid.Contig122252/0/Contig122252.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122252.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/5C/11/Contig122252//theVoid.Contig122252/0/Contig122252.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122252.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/5C/11/Contig122252//theVoid.Contig122252/0/Contig122252.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122252.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/5C/11/Contig122252//theVoid.Contig122252/0/Contig122252.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122252.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/5C/11/Contig122252//theVoid.Contig122252/0/Contig122252.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122252.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/5C/11/Contig122252//theVoid.Contig122252/0/Contig122252.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122252.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/5C/11/Contig122252//theVoid.Contig122252/0/Contig122252.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122252.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/5C/11/Contig122252//theVoid.Contig122252/0/Contig122252.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122252.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/5C/11/Contig122252//theVoid.Contig122252/0/Contig122252.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122252.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/5C/11/Contig122252//theVoid.Contig122252/0/Contig122252.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122252.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/5C/11/Contig122252//theVoid.Contig122252/0/Contig122252.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122252.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/5C/11/Contig122252//theVoid.Contig122252/0/Contig122252.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122252.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/5C/11/Contig122252//theVoid.Contig122252/0/Contig122252.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122252.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/5C/11/Contig122252//theVoid.Contig122252/0/Contig122252.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122252.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/5C/11/Contig122252//theVoid.Contig122252/0/Contig122252.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122252.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/5C/11/Contig122252//theVoid.Contig122252/0/Contig122252.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122252.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/5C/11/Contig122252//theVoid.Contig122252/0/Contig122252.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122252.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/5C/11/Contig122252//theVoid.Contig122252/0/Contig122252.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122252.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/5C/11/Contig122252//theVoid.Contig122252/0/Contig122252.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/comp37379_c1_seq1.for.268-2038.0.fasta -t /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122252.268-2038.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122252.268-2038.comp37379_c1_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/comp37379_c1_seq3.for.157-2038.0.fasta -t /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122252.157-2038.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122252.157-2038.comp37379_c1_seq3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/comp41248_c0_seq5.for.1601-2752.0.fasta -t /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122252.1601-2752.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122252.1601-2752.comp41248_c0_seq5.e.exonerate #-------------------------------# cleaning blastn... cleaning clusters.... total clusters:1 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122252.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/5C/11/Contig122252//theVoid.Contig122252/0/Contig122252.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122252.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/5C/11/Contig122252//theVoid.Contig122252/0/Contig122252.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122252.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/5C/11/Contig122252//theVoid.Contig122252/0/Contig122252.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122252.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/5C/11/Contig122252//theVoid.Contig122252/0/Contig122252.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122252.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/5C/11/Contig122252//theVoid.Contig122252/0/Contig122252.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122252.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/5C/11/Contig122252//theVoid.Contig122252/0/Contig122252.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122252.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/5C/11/Contig122252//theVoid.Contig122252/0/Contig122252.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122252.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/5C/11/Contig122252//theVoid.Contig122252/0/Contig122252.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122252.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/5C/11/Contig122252//theVoid.Contig122252/0/Contig122252.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:3 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122252.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/5C/11/Contig122252//theVoid.Contig122252/0/Contig122252.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:3 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig122253 Length: 3990 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/58/DD/Contig122253//theVoid.Contig122253/0/Contig122253.0.all.rb -species all -dir /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/58/DD/Contig122253//theVoid.Contig122253/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122253.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/58/DD/Contig122253//theVoid.Contig122253/0/Contig122253.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122253.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/58/DD/Contig122253//theVoid.Contig122253/0/Contig122253.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122253.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/58/DD/Contig122253//theVoid.Contig122253/0/Contig122253.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122253.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/58/DD/Contig122253//theVoid.Contig122253/0/Contig122253.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122253.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/58/DD/Contig122253//theVoid.Contig122253/0/Contig122253.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122253.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/58/DD/Contig122253//theVoid.Contig122253/0/Contig122253.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122253.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/58/DD/Contig122253//theVoid.Contig122253/0/Contig122253.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122253.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/58/DD/Contig122253//theVoid.Contig122253/0/Contig122253.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122253.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/58/DD/Contig122253//theVoid.Contig122253/0/Contig122253.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122253.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/58/DD/Contig122253//theVoid.Contig122253/0/Contig122253.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122253.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/58/DD/Contig122253//theVoid.Contig122253/0/Contig122253.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122253.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/58/DD/Contig122253//theVoid.Contig122253/0/Contig122253.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122253.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/58/DD/Contig122253//theVoid.Contig122253/0/Contig122253.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122253.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/58/DD/Contig122253//theVoid.Contig122253/0/Contig122253.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122253.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/58/DD/Contig122253//theVoid.Contig122253/0/Contig122253.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122253.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/58/DD/Contig122253//theVoid.Contig122253/0/Contig122253.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122253.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/58/DD/Contig122253//theVoid.Contig122253/0/Contig122253.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122253.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/58/DD/Contig122253//theVoid.Contig122253/0/Contig122253.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122253.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/58/DD/Contig122253//theVoid.Contig122253/0/Contig122253.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122253.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/58/DD/Contig122253//theVoid.Contig122253/0/Contig122253.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/comp36850_c1_seq1.for.1-809.0.fasta -t /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122253.1-809.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122253.1-809.comp36850_c1_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/comp36850_c1_seq2.for.1-835.0.fasta -t /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122253.1-835.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122253.1-835.comp36850_c1_seq2.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/comp26964_c0_seq1.for.2284-3329.0.fasta -t /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122253.2284-3329.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122253.2284-3329.comp26964_c0_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/comp31179_c0_seq1.for.2808-3860.0.fasta -t /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122253.2808-3860.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122253.2808-3860.comp31179_c0_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/comp26730_c0_seq1.for.3206-3990.0.fasta -t /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122253.3206-3990.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122253.3206-3990.comp26730_c0_seq1.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:4 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:4 now processing 0 total clusters:4 now processing 0 total clusters:4 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122253.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/58/DD/Contig122253//theVoid.Contig122253/0/Contig122253.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122253.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/58/DD/Contig122253//theVoid.Contig122253/0/Contig122253.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122253.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/58/DD/Contig122253//theVoid.Contig122253/0/Contig122253.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122253.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/58/DD/Contig122253//theVoid.Contig122253/0/Contig122253.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122253.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/58/DD/Contig122253//theVoid.Contig122253/0/Contig122253.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122253.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/58/DD/Contig122253//theVoid.Contig122253/0/Contig122253.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122253.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/58/DD/Contig122253//theVoid.Contig122253/0/Contig122253.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122253.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/58/DD/Contig122253//theVoid.Contig122253/0/Contig122253.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122253.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/58/DD/Contig122253//theVoid.Contig122253/0/Contig122253.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122253.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/58/DD/Contig122253//theVoid.Contig122253/0/Contig122253.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig122258 Length: 6572 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/CB/04/Contig122258//theVoid.Contig122258/0/Contig122258.0.all.rb -species all -dir /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/CB/04/Contig122258//theVoid.Contig122258/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122258.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/CB/04/Contig122258//theVoid.Contig122258/0/Contig122258.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122258.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/CB/04/Contig122258//theVoid.Contig122258/0/Contig122258.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122258.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/CB/04/Contig122258//theVoid.Contig122258/0/Contig122258.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122258.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/CB/04/Contig122258//theVoid.Contig122258/0/Contig122258.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122258.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/CB/04/Contig122258//theVoid.Contig122258/0/Contig122258.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122258.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/CB/04/Contig122258//theVoid.Contig122258/0/Contig122258.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122258.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/CB/04/Contig122258//theVoid.Contig122258/0/Contig122258.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122258.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/CB/04/Contig122258//theVoid.Contig122258/0/Contig122258.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122258.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/CB/04/Contig122258//theVoid.Contig122258/0/Contig122258.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122258.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/CB/04/Contig122258//theVoid.Contig122258/0/Contig122258.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122258.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/CB/04/Contig122258//theVoid.Contig122258/0/Contig122258.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122258.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/CB/04/Contig122258//theVoid.Contig122258/0/Contig122258.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122258.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/CB/04/Contig122258//theVoid.Contig122258/0/Contig122258.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122258.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/CB/04/Contig122258//theVoid.Contig122258/0/Contig122258.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122258.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/CB/04/Contig122258//theVoid.Contig122258/0/Contig122258.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122258.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/CB/04/Contig122258//theVoid.Contig122258/0/Contig122258.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122258.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/CB/04/Contig122258//theVoid.Contig122258/0/Contig122258.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122258.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/CB/04/Contig122258//theVoid.Contig122258/0/Contig122258.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122258.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/CB/04/Contig122258//theVoid.Contig122258/0/Contig122258.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122258.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/CB/04/Contig122258//theVoid.Contig122258/0/Contig122258.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/comp38889_c3_seq1.for.1181-2089.0.fasta -t /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122258.1181-2089.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122258.1181-2089.comp38889_c3_seq1.e.exonerate #-------------------------------# cleaning blastn... cleaning clusters.... total clusters:1 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122258.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/CB/04/Contig122258//theVoid.Contig122258/0/Contig122258.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122258.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/CB/04/Contig122258//theVoid.Contig122258/0/Contig122258.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122258.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/CB/04/Contig122258//theVoid.Contig122258/0/Contig122258.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122258.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/CB/04/Contig122258//theVoid.Contig122258/0/Contig122258.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122258.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/CB/04/Contig122258//theVoid.Contig122258/0/Contig122258.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122258.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/CB/04/Contig122258//theVoid.Contig122258/0/Contig122258.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122258.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/CB/04/Contig122258//theVoid.Contig122258/0/Contig122258.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122258.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/CB/04/Contig122258//theVoid.Contig122258/0/Contig122258.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122258.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/CB/04/Contig122258//theVoid.Contig122258/0/Contig122258.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122258.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/CB/04/Contig122258//theVoid.Contig122258/0/Contig122258.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig122259 Length: 1442 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/51/D0/Contig122259//theVoid.Contig122259/0/Contig122259.0.all.rb -species all -dir /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/51/D0/Contig122259//theVoid.Contig122259/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122259.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/51/D0/Contig122259//theVoid.Contig122259/0/Contig122259.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122259.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/51/D0/Contig122259//theVoid.Contig122259/0/Contig122259.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122259.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/51/D0/Contig122259//theVoid.Contig122259/0/Contig122259.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122259.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/51/D0/Contig122259//theVoid.Contig122259/0/Contig122259.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122259.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/51/D0/Contig122259//theVoid.Contig122259/0/Contig122259.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122259.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/51/D0/Contig122259//theVoid.Contig122259/0/Contig122259.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122259.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/51/D0/Contig122259//theVoid.Contig122259/0/Contig122259.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122259.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/51/D0/Contig122259//theVoid.Contig122259/0/Contig122259.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122259.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/51/D0/Contig122259//theVoid.Contig122259/0/Contig122259.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122259.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/51/D0/Contig122259//theVoid.Contig122259/0/Contig122259.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122259.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/51/D0/Contig122259//theVoid.Contig122259/0/Contig122259.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122259.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/51/D0/Contig122259//theVoid.Contig122259/0/Contig122259.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122259.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/51/D0/Contig122259//theVoid.Contig122259/0/Contig122259.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122259.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/51/D0/Contig122259//theVoid.Contig122259/0/Contig122259.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122259.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/51/D0/Contig122259//theVoid.Contig122259/0/Contig122259.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122259.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/51/D0/Contig122259//theVoid.Contig122259/0/Contig122259.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122259.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/51/D0/Contig122259//theVoid.Contig122259/0/Contig122259.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122259.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/51/D0/Contig122259//theVoid.Contig122259/0/Contig122259.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122259.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/51/D0/Contig122259//theVoid.Contig122259/0/Contig122259.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122259.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/51/D0/Contig122259//theVoid.Contig122259/0/Contig122259.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122259.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/51/D0/Contig122259//theVoid.Contig122259/0/Contig122259.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122259.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/51/D0/Contig122259//theVoid.Contig122259/0/Contig122259.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122259.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/51/D0/Contig122259//theVoid.Contig122259/0/Contig122259.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122259.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/51/D0/Contig122259//theVoid.Contig122259/0/Contig122259.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122259.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/51/D0/Contig122259//theVoid.Contig122259/0/Contig122259.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122259.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/51/D0/Contig122259//theVoid.Contig122259/0/Contig122259.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122259.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/51/D0/Contig122259//theVoid.Contig122259/0/Contig122259.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122259.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/51/D0/Contig122259//theVoid.Contig122259/0/Contig122259.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122259.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/51/D0/Contig122259//theVoid.Contig122259/0/Contig122259.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122259.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/51/D0/Contig122259//theVoid.Contig122259/0/Contig122259.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig122260 Length: 4736 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/9A/BE/Contig122260//theVoid.Contig122260/0/Contig122260.0.all.rb -species all -dir /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/9A/BE/Contig122260//theVoid.Contig122260/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122260.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/9A/BE/Contig122260//theVoid.Contig122260/0/Contig122260.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122260.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/9A/BE/Contig122260//theVoid.Contig122260/0/Contig122260.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122260.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/9A/BE/Contig122260//theVoid.Contig122260/0/Contig122260.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122260.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/9A/BE/Contig122260//theVoid.Contig122260/0/Contig122260.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122260.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/9A/BE/Contig122260//theVoid.Contig122260/0/Contig122260.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122260.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/9A/BE/Contig122260//theVoid.Contig122260/0/Contig122260.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122260.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/9A/BE/Contig122260//theVoid.Contig122260/0/Contig122260.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122260.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/9A/BE/Contig122260//theVoid.Contig122260/0/Contig122260.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122260.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/9A/BE/Contig122260//theVoid.Contig122260/0/Contig122260.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122260.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/9A/BE/Contig122260//theVoid.Contig122260/0/Contig122260.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122260.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/9A/BE/Contig122260//theVoid.Contig122260/0/Contig122260.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122260.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/9A/BE/Contig122260//theVoid.Contig122260/0/Contig122260.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122260.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/9A/BE/Contig122260//theVoid.Contig122260/0/Contig122260.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122260.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/9A/BE/Contig122260//theVoid.Contig122260/0/Contig122260.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122260.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/9A/BE/Contig122260//theVoid.Contig122260/0/Contig122260.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122260.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/9A/BE/Contig122260//theVoid.Contig122260/0/Contig122260.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122260.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/9A/BE/Contig122260//theVoid.Contig122260/0/Contig122260.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122260.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/9A/BE/Contig122260//theVoid.Contig122260/0/Contig122260.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122260.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/9A/BE/Contig122260//theVoid.Contig122260/0/Contig122260.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122260.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/9A/BE/Contig122260//theVoid.Contig122260/0/Contig122260.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122260.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/9A/BE/Contig122260//theVoid.Contig122260/0/Contig122260.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122260.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/9A/BE/Contig122260//theVoid.Contig122260/0/Contig122260.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122260.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/9A/BE/Contig122260//theVoid.Contig122260/0/Contig122260.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122260.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/9A/BE/Contig122260//theVoid.Contig122260/0/Contig122260.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122260.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/9A/BE/Contig122260//theVoid.Contig122260/0/Contig122260.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122260.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/9A/BE/Contig122260//theVoid.Contig122260/0/Contig122260.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122260.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/9A/BE/Contig122260//theVoid.Contig122260/0/Contig122260.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122260.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/9A/BE/Contig122260//theVoid.Contig122260/0/Contig122260.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122260.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/9A/BE/Contig122260//theVoid.Contig122260/0/Contig122260.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122260.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/9A/BE/Contig122260//theVoid.Contig122260/0/Contig122260.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig122261 Length: 8089 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/1F/F9/Contig122261//theVoid.Contig122261/0/Contig122261.0.all.rb -species all -dir /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/1F/F9/Contig122261//theVoid.Contig122261/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122261.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/1F/F9/Contig122261//theVoid.Contig122261/0/Contig122261.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122261.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/1F/F9/Contig122261//theVoid.Contig122261/0/Contig122261.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122261.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/1F/F9/Contig122261//theVoid.Contig122261/0/Contig122261.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122261.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/1F/F9/Contig122261//theVoid.Contig122261/0/Contig122261.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122261.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/1F/F9/Contig122261//theVoid.Contig122261/0/Contig122261.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122261.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/1F/F9/Contig122261//theVoid.Contig122261/0/Contig122261.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122261.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/1F/F9/Contig122261//theVoid.Contig122261/0/Contig122261.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122261.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/1F/F9/Contig122261//theVoid.Contig122261/0/Contig122261.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122261.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/1F/F9/Contig122261//theVoid.Contig122261/0/Contig122261.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122261.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/1F/F9/Contig122261//theVoid.Contig122261/0/Contig122261.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122261.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/1F/F9/Contig122261//theVoid.Contig122261/0/Contig122261.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122261.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/1F/F9/Contig122261//theVoid.Contig122261/0/Contig122261.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122261.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/1F/F9/Contig122261//theVoid.Contig122261/0/Contig122261.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122261.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/1F/F9/Contig122261//theVoid.Contig122261/0/Contig122261.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122261.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/1F/F9/Contig122261//theVoid.Contig122261/0/Contig122261.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122261.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/1F/F9/Contig122261//theVoid.Contig122261/0/Contig122261.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122261.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/1F/F9/Contig122261//theVoid.Contig122261/0/Contig122261.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122261.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/1F/F9/Contig122261//theVoid.Contig122261/0/Contig122261.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122261.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/1F/F9/Contig122261//theVoid.Contig122261/0/Contig122261.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122261.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/1F/F9/Contig122261//theVoid.Contig122261/0/Contig122261.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122261.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/1F/F9/Contig122261//theVoid.Contig122261/0/Contig122261.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122261.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/1F/F9/Contig122261//theVoid.Contig122261/0/Contig122261.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122261.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/1F/F9/Contig122261//theVoid.Contig122261/0/Contig122261.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122261.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/1F/F9/Contig122261//theVoid.Contig122261/0/Contig122261.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122261.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/1F/F9/Contig122261//theVoid.Contig122261/0/Contig122261.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122261.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/1F/F9/Contig122261//theVoid.Contig122261/0/Contig122261.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122261.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/1F/F9/Contig122261//theVoid.Contig122261/0/Contig122261.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122261.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/1F/F9/Contig122261//theVoid.Contig122261/0/Contig122261.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122261.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/1F/F9/Contig122261//theVoid.Contig122261/0/Contig122261.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122261.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/1F/F9/Contig122261//theVoid.Contig122261/0/Contig122261.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig122262 Length: 5560 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/05/C5/Contig122262//theVoid.Contig122262/0/Contig122262.0.all.rb -species all -dir /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/05/C5/Contig122262//theVoid.Contig122262/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122262.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/05/C5/Contig122262//theVoid.Contig122262/0/Contig122262.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122262.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/05/C5/Contig122262//theVoid.Contig122262/0/Contig122262.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122262.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/05/C5/Contig122262//theVoid.Contig122262/0/Contig122262.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122262.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/05/C5/Contig122262//theVoid.Contig122262/0/Contig122262.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122262.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/05/C5/Contig122262//theVoid.Contig122262/0/Contig122262.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122262.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/05/C5/Contig122262//theVoid.Contig122262/0/Contig122262.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122262.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/05/C5/Contig122262//theVoid.Contig122262/0/Contig122262.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122262.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/05/C5/Contig122262//theVoid.Contig122262/0/Contig122262.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122262.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/05/C5/Contig122262//theVoid.Contig122262/0/Contig122262.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/te_proteins%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122262.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/05/C5/Contig122262//theVoid.Contig122262/0/Contig122262.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122262.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/05/C5/Contig122262//theVoid.Contig122262/0/Contig122262.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122262.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/05/C5/Contig122262//theVoid.Contig122262/0/Contig122262.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122262.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/05/C5/Contig122262//theVoid.Contig122262/0/Contig122262.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122262.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/05/C5/Contig122262//theVoid.Contig122262/0/Contig122262.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122262.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/05/C5/Contig122262//theVoid.Contig122262/0/Contig122262.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122262.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/05/C5/Contig122262//theVoid.Contig122262/0/Contig122262.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122262.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/05/C5/Contig122262//theVoid.Contig122262/0/Contig122262.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122262.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/05/C5/Contig122262//theVoid.Contig122262/0/Contig122262.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122262.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/05/C5/Contig122262//theVoid.Contig122262/0/Contig122262.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122262.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/05/C5/Contig122262//theVoid.Contig122262/0/Contig122262.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122262.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/05/C5/Contig122262//theVoid.Contig122262/0/Contig122262.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122262.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/05/C5/Contig122262//theVoid.Contig122262/0/Contig122262.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122262.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/05/C5/Contig122262//theVoid.Contig122262/0/Contig122262.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122262.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/05/C5/Contig122262//theVoid.Contig122262/0/Contig122262.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122262.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/05/C5/Contig122262//theVoid.Contig122262/0/Contig122262.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122262.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/05/C5/Contig122262//theVoid.Contig122262/0/Contig122262.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122262.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/05/C5/Contig122262//theVoid.Contig122262/0/Contig122262.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122262.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/05/C5/Contig122262//theVoid.Contig122262/0/Contig122262.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122262.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/05/C5/Contig122262//theVoid.Contig122262/0/Contig122262.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.5/cctools-temp-t.5.LbQJZD/maker_1N8GGR/0/Contig122262.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.5/Olurida_v081.maker.output/Olurida_v081_datastore/05/C5/Contig122262//theVoid.Contig122262/0/Contig122262.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output Maker is now finished!!! Start_time: 1533681053 End_time: 1533681370 Elapsed: 317 ================================= Argument "2.53_01" isn't numeric in numeric ge (>=) at /usr/local/lib/x86_64-linux-gnu/perl/5.22.1/forks.pm line 1570. Unknown option: debug_size_limit STATUS: Parsing control files... STATUS: Processing and indexing input FASTA files... STATUS: Setting up database for any GFF3 input... A data structure will be created for you at: /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore To access files for individual sequences use the datastore index: /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_master_datastore_index.log STATUS: Now running MAKER... examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig81245 Length: 7382 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/84/3C/Contig81245//theVoid.Contig81245/0/Contig81245.0.all.rb -species all -dir /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/84/3C/Contig81245//theVoid.Contig81245/0 -pa 1 #-------------------------------# doing blastx repeats formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/blastprep/te_proteins%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81245.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/84/3C/Contig81245//theVoid.Contig81245/0/Contig81245.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/blastprep/te_proteins%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81245.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/84/3C/Contig81245//theVoid.Contig81245/0/Contig81245.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/blastprep/te_proteins%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81245.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/84/3C/Contig81245//theVoid.Contig81245/0/Contig81245.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/blastprep/te_proteins%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81245.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/84/3C/Contig81245//theVoid.Contig81245/0/Contig81245.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/blastprep/te_proteins%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81245.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/84/3C/Contig81245//theVoid.Contig81245/0/Contig81245.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/blastprep/te_proteins%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81245.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/84/3C/Contig81245//theVoid.Contig81245/0/Contig81245.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/blastprep/te_proteins%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81245.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/84/3C/Contig81245//theVoid.Contig81245/0/Contig81245.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/blastprep/te_proteins%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81245.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/84/3C/Contig81245//theVoid.Contig81245/0/Contig81245.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/blastprep/te_proteins%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81245.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/84/3C/Contig81245//theVoid.Contig81245/0/Contig81245.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/blastprep/te_proteins%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81245.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/84/3C/Contig81245//theVoid.Contig81245/0/Contig81245.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81245.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/84/3C/Contig81245//theVoid.Contig81245/0/Contig81245.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81245.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/84/3C/Contig81245//theVoid.Contig81245/0/Contig81245.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81245.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/84/3C/Contig81245//theVoid.Contig81245/0/Contig81245.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81245.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/84/3C/Contig81245//theVoid.Contig81245/0/Contig81245.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81245.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/84/3C/Contig81245//theVoid.Contig81245/0/Contig81245.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81245.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/84/3C/Contig81245//theVoid.Contig81245/0/Contig81245.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81245.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/84/3C/Contig81245//theVoid.Contig81245/0/Contig81245.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81245.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/84/3C/Contig81245//theVoid.Contig81245/0/Contig81245.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:6 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81245.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/84/3C/Contig81245//theVoid.Contig81245/0/Contig81245.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:5 hits doing blastn of ESTs formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype nucl -in /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/blastprep/Olurida_transcriptome_v3%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81245.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/84/3C/Contig81245//theVoid.Contig81245/0/Contig81245.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:6 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/comp32806_c0_seq1.for.551-2521.0.fasta -t /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81245.551-2521.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81245.551-2521.comp32806_c0_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/comp27091_c0_seq1.for.2440-3625.0.fasta -t /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81245.2440-3625.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81245.2440-3625.comp27091_c0_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/comp40625_c1_seq1.for.3040-4049.0.fasta -t /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81245.3040-4049.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81245.3040-4049.comp40625_c1_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/comp33799_c0_seq1.for.3413-5438.0.fasta -t /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81245.3413-5438.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81245.3413-5438.comp33799_c0_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/comp43107_c3_seq1.for.4128-5065.0.fasta -t /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81245.4128-5065.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81245.4128-5065.comp43107_c3_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/comp43107_c3_seq23.for.4128-5065.0.fasta -t /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81245.4128-5065.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81245.4128-5065.comp43107_c3_seq23.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/comp12981_c0_seq1.for.5514-6630.0.fasta -t /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81245.5514-6630.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81245.5514-6630.comp12981_c0_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/comp18973_c0_seq1.for.5975-7160.0.fasta -t /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81245.5975-7160.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81245.5975-7160.comp18973_c0_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/comp34668_c1_seq2.for.6511-7382.0.fasta -t /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81245.6511-7382.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81245.6511-7382.comp34668_c1_seq2.e.exonerate #-------------------------------# cleaning blastn... in cluster::shadow_cluster... ...finished clustering. in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:7 now processing 0 total clusters:7 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:7 now processing 0 total clusters:7 now processing 0 total clusters:7 now processing 0 ...processing 0 of 2 ...processing 1 of 2 total clusters:7 now processing 0 total clusters:7 now processing 0 flattening EST clusters doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81245.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/84/3C/Contig81245//theVoid.Contig81245/0/Contig81245.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81245.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/84/3C/Contig81245//theVoid.Contig81245/0/Contig81245.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81245.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/84/3C/Contig81245//theVoid.Contig81245/0/Contig81245.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81245.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/84/3C/Contig81245//theVoid.Contig81245/0/Contig81245.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81245.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/84/3C/Contig81245//theVoid.Contig81245/0/Contig81245.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81245.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/84/3C/Contig81245//theVoid.Contig81245/0/Contig81245.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81245.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/84/3C/Contig81245//theVoid.Contig81245/0/Contig81245.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81245.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/84/3C/Contig81245//theVoid.Contig81245/0/Contig81245.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81245.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/84/3C/Contig81245//theVoid.Contig81245/0/Contig81245.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins formating database... #--------- command -------------# Widget::formater: /opt/ncbi-blast-2.6.0+/bin/makeblastdb -dbtype prot -in /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/blastprep/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 #-------------------------------# running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81245.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/84/3C/Contig81245//theVoid.Contig81245/0/Contig81245.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/XP_022313064%2E1.for.3760-4694.0.fasta -t /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81245.3760-4694.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81245.3760-4694.XP_022313064%2E1.p.exonerate #-------------------------------# cleaning blastx... flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig81246 Length: 6481 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/30/4E/Contig81246//theVoid.Contig81246/0/Contig81246.0.all.rb -species all -dir /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/30/4E/Contig81246//theVoid.Contig81246/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81246.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/30/4E/Contig81246//theVoid.Contig81246/0/Contig81246.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:40 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81246.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/30/4E/Contig81246//theVoid.Contig81246/0/Contig81246.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:22 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81246.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/30/4E/Contig81246//theVoid.Contig81246/0/Contig81246.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:25 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81246.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/30/4E/Contig81246//theVoid.Contig81246/0/Contig81246.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:42 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81246.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/30/4E/Contig81246//theVoid.Contig81246/0/Contig81246.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:31 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81246.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/30/4E/Contig81246//theVoid.Contig81246/0/Contig81246.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:47 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81246.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/30/4E/Contig81246//theVoid.Contig81246/0/Contig81246.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:30 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81246.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/30/4E/Contig81246//theVoid.Contig81246/0/Contig81246.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:34 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81246.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/30/4E/Contig81246//theVoid.Contig81246/0/Contig81246.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:41 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81246.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/30/4E/Contig81246//theVoid.Contig81246/0/Contig81246.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:37 hits collecting blastx repeatmasking processing all repeats in cluster::shadow_cluster... ...finished clustering. preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81246.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/30/4E/Contig81246//theVoid.Contig81246/0/Contig81246.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81246.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/30/4E/Contig81246//theVoid.Contig81246/0/Contig81246.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81246.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/30/4E/Contig81246//theVoid.Contig81246/0/Contig81246.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81246.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/30/4E/Contig81246//theVoid.Contig81246/0/Contig81246.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81246.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/30/4E/Contig81246//theVoid.Contig81246/0/Contig81246.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81246.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/30/4E/Contig81246//theVoid.Contig81246/0/Contig81246.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81246.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/30/4E/Contig81246//theVoid.Contig81246/0/Contig81246.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81246.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/30/4E/Contig81246//theVoid.Contig81246/0/Contig81246.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81246.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/30/4E/Contig81246//theVoid.Contig81246/0/Contig81246.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81246.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/30/4E/Contig81246//theVoid.Contig81246/0/Contig81246.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81246.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/30/4E/Contig81246//theVoid.Contig81246/0/Contig81246.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81246.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/30/4E/Contig81246//theVoid.Contig81246/0/Contig81246.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81246.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/30/4E/Contig81246//theVoid.Contig81246/0/Contig81246.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81246.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/30/4E/Contig81246//theVoid.Contig81246/0/Contig81246.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81246.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/30/4E/Contig81246//theVoid.Contig81246/0/Contig81246.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81246.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/30/4E/Contig81246//theVoid.Contig81246/0/Contig81246.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81246.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/30/4E/Contig81246//theVoid.Contig81246/0/Contig81246.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81246.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/30/4E/Contig81246//theVoid.Contig81246/0/Contig81246.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81246.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/30/4E/Contig81246//theVoid.Contig81246/0/Contig81246.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81246.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/30/4E/Contig81246//theVoid.Contig81246/0/Contig81246.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/EKC28925%2E1.for.1327-2462.0.fasta -t /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81246.1327-2462.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81246.1327-2462.EKC28925%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/EKC23026%2E1.for.1510-2474.0.fasta -t /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81246.1510-2474.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81246.1510-2474.EKC23026%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/EKC38978%2E1.for.1516-2477.0.fasta -t /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81246.1516-2477.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81246.1516-2477.EKC38978%2E1.p.exonerate #-------------------------------# cleaning blastx... in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:1 now processing 0 ...processing 0 of 2 ...processing 1 of 2 in cluster::shadow_cluster... ...finished clustering. cleaning clusters.... total clusters:1 now processing 0 ...processing 0 of 2 ...processing 1 of 2 flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig81247 Length: 7716 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/0C/22/Contig81247//theVoid.Contig81247/0/Contig81247.0.all.rb -species all -dir /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/0C/22/Contig81247//theVoid.Contig81247/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81247.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/0C/22/Contig81247//theVoid.Contig81247/0/Contig81247.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81247.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/0C/22/Contig81247//theVoid.Contig81247/0/Contig81247.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81247.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/0C/22/Contig81247//theVoid.Contig81247/0/Contig81247.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81247.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/0C/22/Contig81247//theVoid.Contig81247/0/Contig81247.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81247.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/0C/22/Contig81247//theVoid.Contig81247/0/Contig81247.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81247.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/0C/22/Contig81247//theVoid.Contig81247/0/Contig81247.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81247.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/0C/22/Contig81247//theVoid.Contig81247/0/Contig81247.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81247.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/0C/22/Contig81247//theVoid.Contig81247/0/Contig81247.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81247.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/0C/22/Contig81247//theVoid.Contig81247/0/Contig81247.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81247.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/0C/22/Contig81247//theVoid.Contig81247/0/Contig81247.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81247.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/0C/22/Contig81247//theVoid.Contig81247/0/Contig81247.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81247.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/0C/22/Contig81247//theVoid.Contig81247/0/Contig81247.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81247.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/0C/22/Contig81247//theVoid.Contig81247/0/Contig81247.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81247.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/0C/22/Contig81247//theVoid.Contig81247/0/Contig81247.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81247.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/0C/22/Contig81247//theVoid.Contig81247/0/Contig81247.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81247.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/0C/22/Contig81247//theVoid.Contig81247/0/Contig81247.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81247.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/0C/22/Contig81247//theVoid.Contig81247/0/Contig81247.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81247.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/0C/22/Contig81247//theVoid.Contig81247/0/Contig81247.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81247.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/0C/22/Contig81247//theVoid.Contig81247/0/Contig81247.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81247.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/0C/22/Contig81247//theVoid.Contig81247/0/Contig81247.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/comp43132_c0_seq3.for.501-1586.0.fasta -t /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81247.501-1586.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81247.501-1586.comp43132_c0_seq3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/comp35884_c0_seq1.for.1198-4714.0.fasta -t /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81247.1198-4714.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81247.1198-4714.comp35884_c0_seq1.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/comp1837_c0_seq1.for.4478-5666.0.fasta -t /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81247.4478-5666.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81247.4478-5666.comp1837_c0_seq1.e.exonerate #-------------------------------# cleaning blastn... cleaning clusters.... total clusters:2 now processing 0 total clusters:2 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81247.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/0C/22/Contig81247//theVoid.Contig81247/0/Contig81247.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81247.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/0C/22/Contig81247//theVoid.Contig81247/0/Contig81247.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81247.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/0C/22/Contig81247//theVoid.Contig81247/0/Contig81247.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81247.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/0C/22/Contig81247//theVoid.Contig81247/0/Contig81247.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81247.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/0C/22/Contig81247//theVoid.Contig81247/0/Contig81247.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81247.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/0C/22/Contig81247//theVoid.Contig81247/0/Contig81247.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81247.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/0C/22/Contig81247//theVoid.Contig81247/0/Contig81247.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81247.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/0C/22/Contig81247//theVoid.Contig81247/0/Contig81247.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81247.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/0C/22/Contig81247//theVoid.Contig81247/0/Contig81247.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81247.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/0C/22/Contig81247//theVoid.Contig81247/0/Contig81247.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports in cluster::shadow_cluster... ...finished clustering. polishing proteins running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/EKC23260%2E1.for.1199-4113.0.fasta -t /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81247.1199-4113.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81247.1199-4113.EKC23260%2E1.p.exonerate #-------------------------------# running exonerate search. #--------- command -------------# Widget::exonerate::protein2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/XP_022341597%2E1.for.1199-4113.0.fasta -t /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81247.1199-4113.0.fasta -Q protein -T dna -m protein2genome --softmasktarget --percent 20 --showcigar > /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81247.1199-4113.XP_022341597%2E1.p.exonerate #-------------------------------# cleaning blastx... flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig81248 Length: 3768 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/5B/7E/Contig81248//theVoid.Contig81248/0/Contig81248.0.all.rb -species all -dir /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/5B/7E/Contig81248//theVoid.Contig81248/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81248.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/5B/7E/Contig81248//theVoid.Contig81248/0/Contig81248.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81248.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/5B/7E/Contig81248//theVoid.Contig81248/0/Contig81248.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81248.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/5B/7E/Contig81248//theVoid.Contig81248/0/Contig81248.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81248.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/5B/7E/Contig81248//theVoid.Contig81248/0/Contig81248.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81248.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/5B/7E/Contig81248//theVoid.Contig81248/0/Contig81248.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81248.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/5B/7E/Contig81248//theVoid.Contig81248/0/Contig81248.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81248.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/5B/7E/Contig81248//theVoid.Contig81248/0/Contig81248.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81248.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/5B/7E/Contig81248//theVoid.Contig81248/0/Contig81248.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81248.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/5B/7E/Contig81248//theVoid.Contig81248/0/Contig81248.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81248.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/5B/7E/Contig81248//theVoid.Contig81248/0/Contig81248.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81248.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/5B/7E/Contig81248//theVoid.Contig81248/0/Contig81248.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81248.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/5B/7E/Contig81248//theVoid.Contig81248/0/Contig81248.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81248.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/5B/7E/Contig81248//theVoid.Contig81248/0/Contig81248.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81248.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/5B/7E/Contig81248//theVoid.Contig81248/0/Contig81248.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81248.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/5B/7E/Contig81248//theVoid.Contig81248/0/Contig81248.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81248.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/5B/7E/Contig81248//theVoid.Contig81248/0/Contig81248.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:4 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81248.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/5B/7E/Contig81248//theVoid.Contig81248/0/Contig81248.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81248.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/5B/7E/Contig81248//theVoid.Contig81248/0/Contig81248.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:7 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81248.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/5B/7E/Contig81248//theVoid.Contig81248/0/Contig81248.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:3 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81248.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/5B/7E/Contig81248//theVoid.Contig81248/0/Contig81248.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:2 hits collecting blastn reports in cluster::shadow_cluster... ...finished clustering. polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/comp42539_c0_seq8.for.1-1479.0.fasta -t /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81248.1-1479.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81248.1-1479.comp42539_c0_seq8.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/comp42539_c0_seq3.for.1-2196.0.fasta -t /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81248.1-2196.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81248.1-2196.comp42539_c0_seq3.e.exonerate #-------------------------------# running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/comp42539_c0_seq6.for.1-2421.0.fasta -t /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81248.1-2421.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81248.1-2421.comp42539_c0_seq6.e.exonerate #-------------------------------# cleaning blastn... flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81248.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/5B/7E/Contig81248//theVoid.Contig81248/0/Contig81248.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81248.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/5B/7E/Contig81248//theVoid.Contig81248/0/Contig81248.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81248.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/5B/7E/Contig81248//theVoid.Contig81248/0/Contig81248.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81248.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/5B/7E/Contig81248//theVoid.Contig81248/0/Contig81248.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81248.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/5B/7E/Contig81248//theVoid.Contig81248/0/Contig81248.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81248.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/5B/7E/Contig81248//theVoid.Contig81248/0/Contig81248.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81248.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/5B/7E/Contig81248//theVoid.Contig81248/0/Contig81248.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81248.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/5B/7E/Contig81248//theVoid.Contig81248/0/Contig81248.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81248.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/5B/7E/Contig81248//theVoid.Contig81248/0/Contig81248.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81248.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/5B/7E/Contig81248//theVoid.Contig81248/0/Contig81248.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:1 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig81249 Length: 3697 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/93/36/Contig81249//theVoid.Contig81249/0/Contig81249.0.all.rb -species all -dir /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/93/36/Contig81249//theVoid.Contig81249/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81249.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/93/36/Contig81249//theVoid.Contig81249/0/Contig81249.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81249.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/93/36/Contig81249//theVoid.Contig81249/0/Contig81249.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81249.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/93/36/Contig81249//theVoid.Contig81249/0/Contig81249.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81249.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/93/36/Contig81249//theVoid.Contig81249/0/Contig81249.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81249.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/93/36/Contig81249//theVoid.Contig81249/0/Contig81249.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81249.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/93/36/Contig81249//theVoid.Contig81249/0/Contig81249.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81249.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/93/36/Contig81249//theVoid.Contig81249/0/Contig81249.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81249.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/93/36/Contig81249//theVoid.Contig81249/0/Contig81249.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81249.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/93/36/Contig81249//theVoid.Contig81249/0/Contig81249.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81249.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/93/36/Contig81249//theVoid.Contig81249/0/Contig81249.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81249.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/93/36/Contig81249//theVoid.Contig81249/0/Contig81249.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81249.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/93/36/Contig81249//theVoid.Contig81249/0/Contig81249.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81249.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/93/36/Contig81249//theVoid.Contig81249/0/Contig81249.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81249.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/93/36/Contig81249//theVoid.Contig81249/0/Contig81249.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81249.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/93/36/Contig81249//theVoid.Contig81249/0/Contig81249.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81249.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/93/36/Contig81249//theVoid.Contig81249/0/Contig81249.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81249.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/93/36/Contig81249//theVoid.Contig81249/0/Contig81249.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81249.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/93/36/Contig81249//theVoid.Contig81249/0/Contig81249.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:2 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81249.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/93/36/Contig81249//theVoid.Contig81249/0/Contig81249.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81249.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/93/36/Contig81249//theVoid.Contig81249/0/Contig81249.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81249.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/93/36/Contig81249//theVoid.Contig81249/0/Contig81249.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81249.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/93/36/Contig81249//theVoid.Contig81249/0/Contig81249.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81249.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/93/36/Contig81249//theVoid.Contig81249/0/Contig81249.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81249.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/93/36/Contig81249//theVoid.Contig81249/0/Contig81249.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81249.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/93/36/Contig81249//theVoid.Contig81249/0/Contig81249.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81249.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/93/36/Contig81249//theVoid.Contig81249/0/Contig81249.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81249.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/93/36/Contig81249//theVoid.Contig81249/0/Contig81249.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81249.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/93/36/Contig81249//theVoid.Contig81249/0/Contig81249.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81249.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/93/36/Contig81249//theVoid.Contig81249/0/Contig81249.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81249.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/93/36/Contig81249//theVoid.Contig81249/0/Contig81249.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig81250 Length: 1012 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/73/F3/Contig81250//theVoid.Contig81250/0/Contig81250.0.all.rb -species all -dir /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/73/F3/Contig81250//theVoid.Contig81250/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81250.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/73/F3/Contig81250//theVoid.Contig81250/0/Contig81250.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81250.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/73/F3/Contig81250//theVoid.Contig81250/0/Contig81250.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81250.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/73/F3/Contig81250//theVoid.Contig81250/0/Contig81250.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81250.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/73/F3/Contig81250//theVoid.Contig81250/0/Contig81250.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81250.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/73/F3/Contig81250//theVoid.Contig81250/0/Contig81250.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81250.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/73/F3/Contig81250//theVoid.Contig81250/0/Contig81250.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81250.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/73/F3/Contig81250//theVoid.Contig81250/0/Contig81250.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81250.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/73/F3/Contig81250//theVoid.Contig81250/0/Contig81250.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81250.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/73/F3/Contig81250//theVoid.Contig81250/0/Contig81250.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81250.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/73/F3/Contig81250//theVoid.Contig81250/0/Contig81250.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81250.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/73/F3/Contig81250//theVoid.Contig81250/0/Contig81250.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81250.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/73/F3/Contig81250//theVoid.Contig81250/0/Contig81250.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81250.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/73/F3/Contig81250//theVoid.Contig81250/0/Contig81250.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81250.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/73/F3/Contig81250//theVoid.Contig81250/0/Contig81250.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81250.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/73/F3/Contig81250//theVoid.Contig81250/0/Contig81250.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81250.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/73/F3/Contig81250//theVoid.Contig81250/0/Contig81250.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81250.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/73/F3/Contig81250//theVoid.Contig81250/0/Contig81250.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81250.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/73/F3/Contig81250//theVoid.Contig81250/0/Contig81250.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81250.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/73/F3/Contig81250//theVoid.Contig81250/0/Contig81250.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81250.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/73/F3/Contig81250//theVoid.Contig81250/0/Contig81250.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81250.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/73/F3/Contig81250//theVoid.Contig81250/0/Contig81250.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81250.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/73/F3/Contig81250//theVoid.Contig81250/0/Contig81250.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81250.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/73/F3/Contig81250//theVoid.Contig81250/0/Contig81250.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81250.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/73/F3/Contig81250//theVoid.Contig81250/0/Contig81250.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81250.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/73/F3/Contig81250//theVoid.Contig81250/0/Contig81250.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81250.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/73/F3/Contig81250//theVoid.Contig81250/0/Contig81250.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81250.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/73/F3/Contig81250//theVoid.Contig81250/0/Contig81250.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81250.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/73/F3/Contig81250//theVoid.Contig81250/0/Contig81250.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81250.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/73/F3/Contig81250//theVoid.Contig81250/0/Contig81250.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81250.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/73/F3/Contig81250//theVoid.Contig81250/0/Contig81250.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig81251 Length: 1732 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/F3/25/Contig81251//theVoid.Contig81251/0/Contig81251.0.all.rb -species all -dir /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/F3/25/Contig81251//theVoid.Contig81251/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81251.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/F3/25/Contig81251//theVoid.Contig81251/0/Contig81251.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81251.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/F3/25/Contig81251//theVoid.Contig81251/0/Contig81251.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81251.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/F3/25/Contig81251//theVoid.Contig81251/0/Contig81251.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81251.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/F3/25/Contig81251//theVoid.Contig81251/0/Contig81251.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81251.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/F3/25/Contig81251//theVoid.Contig81251/0/Contig81251.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81251.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/F3/25/Contig81251//theVoid.Contig81251/0/Contig81251.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81251.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/F3/25/Contig81251//theVoid.Contig81251/0/Contig81251.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81251.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/F3/25/Contig81251//theVoid.Contig81251/0/Contig81251.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81251.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/F3/25/Contig81251//theVoid.Contig81251/0/Contig81251.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81251.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/F3/25/Contig81251//theVoid.Contig81251/0/Contig81251.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81251.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/F3/25/Contig81251//theVoid.Contig81251/0/Contig81251.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81251.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/F3/25/Contig81251//theVoid.Contig81251/0/Contig81251.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81251.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/F3/25/Contig81251//theVoid.Contig81251/0/Contig81251.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81251.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/F3/25/Contig81251//theVoid.Contig81251/0/Contig81251.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81251.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/F3/25/Contig81251//theVoid.Contig81251/0/Contig81251.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81251.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/F3/25/Contig81251//theVoid.Contig81251/0/Contig81251.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81251.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/F3/25/Contig81251//theVoid.Contig81251/0/Contig81251.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81251.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/F3/25/Contig81251//theVoid.Contig81251/0/Contig81251.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81251.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/F3/25/Contig81251//theVoid.Contig81251/0/Contig81251.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81251.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/F3/25/Contig81251//theVoid.Contig81251/0/Contig81251.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/comp41052_c2_seq1.for.947-1732.0.fasta -t /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81251.947-1732.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81251.947-1732.comp41052_c2_seq1.e.exonerate #-------------------------------# cleaning blastn... flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81251.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/F3/25/Contig81251//theVoid.Contig81251/0/Contig81251.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81251.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/F3/25/Contig81251//theVoid.Contig81251/0/Contig81251.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81251.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/F3/25/Contig81251//theVoid.Contig81251/0/Contig81251.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:2 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81251.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/F3/25/Contig81251//theVoid.Contig81251/0/Contig81251.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:4 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81251.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/F3/25/Contig81251//theVoid.Contig81251/0/Contig81251.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81251.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/F3/25/Contig81251//theVoid.Contig81251/0/Contig81251.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:7 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81251.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/F3/25/Contig81251//theVoid.Contig81251/0/Contig81251.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:3 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81251.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/F3/25/Contig81251//theVoid.Contig81251/0/Contig81251.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:4 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81251.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/F3/25/Contig81251//theVoid.Contig81251/0/Contig81251.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:1 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81251.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/F3/25/Contig81251//theVoid.Contig81251/0/Contig81251.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:5 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig81253 Length: 2554 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/66/C6/Contig81253//theVoid.Contig81253/0/Contig81253.0.all.rb -species all -dir /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/66/C6/Contig81253//theVoid.Contig81253/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81253.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/66/C6/Contig81253//theVoid.Contig81253/0/Contig81253.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81253.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/66/C6/Contig81253//theVoid.Contig81253/0/Contig81253.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81253.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/66/C6/Contig81253//theVoid.Contig81253/0/Contig81253.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81253.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/66/C6/Contig81253//theVoid.Contig81253/0/Contig81253.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81253.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/66/C6/Contig81253//theVoid.Contig81253/0/Contig81253.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81253.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/66/C6/Contig81253//theVoid.Contig81253/0/Contig81253.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81253.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/66/C6/Contig81253//theVoid.Contig81253/0/Contig81253.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81253.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/66/C6/Contig81253//theVoid.Contig81253/0/Contig81253.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81253.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/66/C6/Contig81253//theVoid.Contig81253/0/Contig81253.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81253.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/66/C6/Contig81253//theVoid.Contig81253/0/Contig81253.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81253.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/66/C6/Contig81253//theVoid.Contig81253/0/Contig81253.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81253.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/66/C6/Contig81253//theVoid.Contig81253/0/Contig81253.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81253.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/66/C6/Contig81253//theVoid.Contig81253/0/Contig81253.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81253.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/66/C6/Contig81253//theVoid.Contig81253/0/Contig81253.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81253.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/66/C6/Contig81253//theVoid.Contig81253/0/Contig81253.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81253.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/66/C6/Contig81253//theVoid.Contig81253/0/Contig81253.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81253.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/66/C6/Contig81253//theVoid.Contig81253/0/Contig81253.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81253.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/66/C6/Contig81253//theVoid.Contig81253/0/Contig81253.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81253.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/66/C6/Contig81253//theVoid.Contig81253/0/Contig81253.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:1 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81253.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/66/C6/Contig81253//theVoid.Contig81253/0/Contig81253.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:1 hits collecting blastn reports flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81253.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/66/C6/Contig81253//theVoid.Contig81253/0/Contig81253.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81253.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/66/C6/Contig81253//theVoid.Contig81253/0/Contig81253.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81253.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/66/C6/Contig81253//theVoid.Contig81253/0/Contig81253.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81253.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/66/C6/Contig81253//theVoid.Contig81253/0/Contig81253.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81253.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/66/C6/Contig81253//theVoid.Contig81253/0/Contig81253.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81253.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/66/C6/Contig81253//theVoid.Contig81253/0/Contig81253.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81253.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/66/C6/Contig81253//theVoid.Contig81253/0/Contig81253.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.6.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81253.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/66/C6/Contig81253//theVoid.Contig81253/0/Contig81253.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.7.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81253.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/66/C6/Contig81253//theVoid.Contig81253/0/Contig81253.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.8.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81253.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/66/C6/Contig81253//theVoid.Contig81253/0/Contig81253.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.9.blastx #-------------------------------# deleted:0 hits collecting blastx reports flattening protein clusters prepare section files processing the chunk divide processing contig output examining contents of the fasta file and run log --Next Contig-- #--------------------------------------------------------------------- Now starting the contig!! SeqID: Contig81254 Length: 2179 #--------------------------------------------------------------------- setting up GFF3 output and fasta chunks doing repeat masking running repeat masker. #--------- command -------------# Widget::RepeatMasker: cd /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8; /opt/RepeatMasker/RepeatMasker /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/18/1B/Contig81254//theVoid.Contig81254/0/Contig81254.0.all.rb -species all -dir /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/18/1B/Contig81254//theVoid.Contig81254/0 -pa 1 #-------------------------------# doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81254.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/18/1B/Contig81254//theVoid.Contig81254/0/Contig81254.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.0.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81254.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/18/1B/Contig81254//theVoid.Contig81254/0/Contig81254.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.1.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81254.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/18/1B/Contig81254//theVoid.Contig81254/0/Contig81254.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.2.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81254.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/18/1B/Contig81254//theVoid.Contig81254/0/Contig81254.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.3.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81254.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/18/1B/Contig81254//theVoid.Contig81254/0/Contig81254.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.4.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81254.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/18/1B/Contig81254//theVoid.Contig81254/0/Contig81254.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.5.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81254.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/18/1B/Contig81254//theVoid.Contig81254/0/Contig81254.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.6.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81254.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/18/1B/Contig81254//theVoid.Contig81254/0/Contig81254.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.7.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81254.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/18/1B/Contig81254//theVoid.Contig81254/0/Contig81254.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.8.repeatrunner #-------------------------------# deleted:0 hits doing blastx repeats running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/te_proteins%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81254.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/18/1B/Contig81254//theVoid.Contig81254/0/Contig81254.0.te_proteins%2Efasta.repeatrunner.temp_dir/te_proteins%2Efasta.mpi.10.9.repeatrunner #-------------------------------# deleted:0 hits collecting blastx repeatmasking processing all repeats preparing masked sequence preparing ab-inits gathering ab-init output files doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81254.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/18/1B/Contig81254//theVoid.Contig81254/0/Contig81254.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.0.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81254.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/18/1B/Contig81254//theVoid.Contig81254/0/Contig81254.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.1.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81254.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/18/1B/Contig81254//theVoid.Contig81254/0/Contig81254.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.2.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81254.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/18/1B/Contig81254//theVoid.Contig81254/0/Contig81254.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.3.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81254.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/18/1B/Contig81254//theVoid.Contig81254/0/Contig81254.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.4.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81254.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/18/1B/Contig81254//theVoid.Contig81254/0/Contig81254.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.5.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.6 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81254.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/18/1B/Contig81254//theVoid.Contig81254/0/Contig81254.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.6.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.7 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81254.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/18/1B/Contig81254//theVoid.Contig81254/0/Contig81254.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.7.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.8 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81254.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/18/1B/Contig81254//theVoid.Contig81254/0/Contig81254.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.8.blastn #-------------------------------# deleted:0 hits doing blastn of ESTs running blast search. #--------- command -------------# Widget::blastn: /opt/ncbi-blast-2.6.0+/bin/blastn -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/Olurida_transcriptome_v3%2Efasta.mpi.10.9 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81254.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-10 -word_size 28 -reward 1 -penalty -5 -gapopen 5 -gapextend 5 -dbsize 1000 -searchsp 500000000 -num_threads 1 -lcase_masking -dust yes -soft_masking true -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/18/1B/Contig81254//theVoid.Contig81254/0/Contig81254.0.Olurida_transcriptome_v3%2Efasta.blastn.temp_dir/Olurida_transcriptome_v3%2Efasta.mpi.10.9.blastn #-------------------------------# deleted:0 hits collecting blastn reports polishig ESTs running est2genome search. #--------- command -------------# Widget::exonerate::est2genome: /opt/exonerate-2.2.0-x86_64/bin/exonerate -q /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/comp30928_c0_seq1.for.1321-2179.0.fasta -t /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81254.1321-2179.0.fasta -Q dna -T dna --model est2genome --minintron 20 --maxintron 10000 --showcigar --percent 20 > /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81254.1321-2179.comp30928_c0_seq1.e.exonerate #-------------------------------# cleaning blastn... cleaning clusters.... total clusters:1 now processing 0 flattening EST clusters doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81254.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/18/1B/Contig81254//theVoid.Contig81254/0/Contig81254.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.0.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81254.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/18/1B/Contig81254//theVoid.Contig81254/0/Contig81254.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.1.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81254.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/18/1B/Contig81254//theVoid.Contig81254/0/Contig81254.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.2.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81254.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/18/1B/Contig81254//theVoid.Contig81254/0/Contig81254.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.3.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81254.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/18/1B/Contig81254//theVoid.Contig81254/0/Contig81254.0.gigas_virginica_ncbi_proteomes%2Efasta.blastx.temp_dir/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.4.blastx #-------------------------------# deleted:0 hits doing blastx of proteins running blast search. #--------- command -------------# Widget::blastx: /opt/ncbi-blast-2.6.0+/bin/blastx -db /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/gigas_virginica_ncbi_proteomes%2Efasta.mpi.10.5 -query /tmp/worker-1000-9710/t.10/cctools-temp-t.10.IiAJtV/maker_iIRBu8/0/Contig81254.0 -num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300 -searchsp 500000000 -num_threads 1 -seg yes -soft_masking true -lcase_masking -show_gis -out /tmp/worker-1000-9710/t.10/Olurida_v081.maker.output/Olurida_v081_datastore/18/1B/Contig81254//theVoid.Contig81254/0/Contig81254.0.gigas_virgini