FastQCFastQC Report
Tue 11 Sep 2018
7_CAGATC_L001_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename7_CAGATC_L001_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10295293
Sequences flagged as poor quality0
Sequence length51
%GC26

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTAGAAC252.8795672E-547.3565831
CCCCTGT301.5248843E-647.3565831
CCTAGAC205.4711313E-447.3565831
CTAAGTC252.8795672E-547.3565831
CTAAGCA252.8795672E-547.3565831
CTAAGAC252.8795672E-547.3565831
CCTCGTG205.4711313E-447.3565831
CCAGAAA205.4711313E-447.3565831
CTAACGC301.5248843E-647.3565831
ACTAGCG205.4711313E-447.3565831
CTAGGTC205.4711313E-447.3565831
CTGTGAC750.047.3565831
CTCAGTA553.45608E-1143.051441
CCTGGAC506.566552E-1042.6209221
CAGCGGT451.2305463E-842.094741
CTACTGG451.2305463E-842.094741
TCACGGG402.3193388E-741.4370081
CTTGACG402.3193388E-741.4370081
CCAAGGT1450.040.8246421
CTCGTAA354.4040844E-640.591361
Produced by FastQC (version 0.11.5)