Basic Statistics
Measure | Value |
---|---|
Filename | 7_CAGATC_L001_R1_001.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 10295293 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 26 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTAGAAC | 25 | 2.8795672E-5 | 47.356583 | 1 |
CCCCTGT | 30 | 1.5248843E-6 | 47.356583 | 1 |
CCTAGAC | 20 | 5.4711313E-4 | 47.356583 | 1 |
CTAAGTC | 25 | 2.8795672E-5 | 47.356583 | 1 |
CTAAGCA | 25 | 2.8795672E-5 | 47.356583 | 1 |
CTAAGAC | 25 | 2.8795672E-5 | 47.356583 | 1 |
CCTCGTG | 20 | 5.4711313E-4 | 47.356583 | 1 |
CCAGAAA | 20 | 5.4711313E-4 | 47.356583 | 1 |
CTAACGC | 30 | 1.5248843E-6 | 47.356583 | 1 |
ACTAGCG | 20 | 5.4711313E-4 | 47.356583 | 1 |
CTAGGTC | 20 | 5.4711313E-4 | 47.356583 | 1 |
CTGTGAC | 75 | 0.0 | 47.356583 | 1 |
CTCAGTA | 55 | 3.45608E-11 | 43.05144 | 1 |
CCTGGAC | 50 | 6.566552E-10 | 42.620922 | 1 |
CAGCGGT | 45 | 1.2305463E-8 | 42.09474 | 1 |
CTACTGG | 45 | 1.2305463E-8 | 42.09474 | 1 |
TCACGGG | 40 | 2.3193388E-7 | 41.437008 | 1 |
CTTGACG | 40 | 2.3193388E-7 | 41.437008 | 1 |
CCAAGGT | 145 | 0.0 | 40.824642 | 1 |
CTCGTAA | 35 | 4.4040844E-6 | 40.59136 | 1 |