Basic Statistics
Measure | Value |
---|---|
Filename | 1_ATCACG_L001_R1_001_trimmed.fq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 9365330 |
Sequences flagged as poor quality | 0 |
Sequence length | 20-43 |
%GC | 24 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCATCGT | 20 | 0.001975994 | 36.477013 | 23 |
TAATTCC | 20 | 0.00202406 | 36.29885 | 19 |
CCCTGAA | 20 | 0.0020645394 | 36.152702 | 12 |
GCCCTGA | 20 | 0.0020647016 | 36.152122 | 11 |
TCCGTTC | 20 | 0.0020647016 | 36.152122 | 8 |
CCTGAAC | 20 | 0.00206481 | 36.151737 | 13 |
ACTACGC | 20 | 0.002065351 | 36.149807 | 6 |
CGAGACT | 20 | 0.0020662171 | 36.146717 | 2 |
CACTAAG | 25 | 0.005591246 | 29.498674 | 30 |
TGTGCTC | 345 | 0.0 | 29.336468 | 1 |
GCATATC | 25 | 0.005859623 | 29.217026 | 24 |
CTTAAGC | 25 | 0.0060371654 | 29.03908 | 19 |
TACGCCC | 25 | 0.006157817 | 28.9217 | 8 |
GTTCCAT | 25 | 0.006157817 | 28.9217 | 11 |
CGTTCCA | 25 | 0.0061579775 | 28.921545 | 10 |
GACGCTC | 90 | 0.0 | 28.114115 | 1 |
GACTTAC | 35 | 0.0010159872 | 25.822947 | 9 |
ACTAAGG | 50 | 2.7271232E-4 | 22.172188 | 31 |
ACGCTCT | 120 | 1.4551915E-11 | 21.085585 | 2 |
GTGCTCT | 500 | 0.0 | 20.60363 | 2 |