Basic Statistics
Measure | Value |
---|---|
Filename | 2_CGATGT_L001_R1_001_trimmed.fq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 11879398 |
Sequences flagged as poor quality | 0 |
Sequence length | 20-43 |
%GC | 24 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AGACTAC | 55 | 6.712071E-10 | 32.729107 | 4 |
GACTACG | 60 | 1.7062121E-9 | 30.00206 | 5 |
CGAGACT | 60 | 1.7062121E-9 | 30.001553 | 2 |
CCTGAAC | 75 | 2.0008883E-11 | 28.804766 | 13 |
ACTACGC | 65 | 4.0090526E-9 | 27.695375 | 6 |
TGTGCTC | 1140 | 0.0 | 27.475107 | 1 |
CTTAAGC | 60 | 5.3216354E-8 | 27.166395 | 19 |
ACGCCCT | 70 | 8.827556E-9 | 25.718758 | 9 |
CTACGCC | 70 | 8.827556E-9 | 25.718649 | 7 |
CGCCCTG | 70 | 8.827556E-9 | 25.718649 | 10 |
CACTAAG | 80 | 9.622454E-10 | 25.481895 | 30 |
TACGCCC | 75 | 1.8382707E-8 | 24.004173 | 8 |
GCCCTGA | 75 | 1.8382707E-8 | 24.004072 | 11 |
TTGATCC | 40 | 0.002205277 | 22.60516 | 18 |
GAGACTA | 85 | 6.931441E-8 | 21.177656 | 3 |
GTGCTCT | 1535 | 0.0 | 20.756775 | 2 |
GACGCTC | 165 | 0.0 | 20.728346 | 1 |
CGCTCTT | 170 | 0.0 | 20.118773 | 3 |
CTGAACT | 100 | 1.7689672E-8 | 19.802443 | 14 |
TGCTCTT | 1565 | 0.0 | 19.668833 | 3 |