Basic Statistics
Measure | Value |
---|---|
Filename | 4_TGACCA_L001_R1_001_trimmed.fq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 11560658 |
Sequences flagged as poor quality | 0 |
Sequence length | 20-43 |
%GC | 24 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ACTCGGC | 20 | 0.0017981592 | 37.184517 | 33 |
CGAACTC | 20 | 0.0018648722 | 36.909668 | 30 |
CATTCCG | 25 | 1.3161398E-4 | 36.598568 | 25 |
CCCTGAA | 45 | 3.3051037E-9 | 36.13756 | 12 |
GGCTGCA | 20 | 0.002068852 | 36.137405 | 10 |
TCAGGGC | 20 | 0.0020692914 | 36.13584 | 13 |
GACTACG | 50 | 2.3283064E-10 | 36.13365 | 5 |
AGACTAC | 50 | 2.3283064E-10 | 36.132717 | 4 |
CACTAAG | 55 | 5.14774E-10 | 33.554245 | 30 |
CGGCCGT | 25 | 0.0031633005 | 33.13993 | 36 |
TACGCCC | 55 | 6.4574124E-10 | 32.85219 | 8 |
CGAGACT | 55 | 6.4574124E-10 | 32.847923 | 2 |
GCCCTGA | 50 | 9.244104E-9 | 32.52395 | 11 |
ACGCCCT | 50 | 9.244104E-9 | 32.523663 | 9 |
GCATATC | 60 | 1.4533725E-9 | 30.45411 | 24 |
CTTAAGC | 60 | 1.5697879E-9 | 30.236399 | 19 |
CTACGCC | 60 | 1.6389095E-9 | 30.1145 | 7 |
ACTACGC | 60 | 1.6407284E-9 | 30.112938 | 6 |
AACTCGG | 25 | 0.0054344637 | 29.670885 | 32 |
GAACTCG | 25 | 0.0055040387 | 29.593761 | 31 |