Basic Statistics
Measure | Value |
---|---|
Filename | 5_ACAGTG_L001_R1_001_trimmed.fq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 12502181 |
Sequences flagged as poor quality | 0 |
Sequence length | 20-43 |
%GC | 24 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTTAAGC | 50 | 2.2919266E-10 | 36.177937 | 19 |
CCTGAAC | 60 | 1.8189894E-12 | 35.931072 | 13 |
AGACTAC | 55 | 6.87578E-10 | 32.66069 | 4 |
TGTGCTC | 740 | 0.0 | 31.31454 | 1 |
GCATATC | 60 | 1.4424586E-9 | 30.477724 | 24 |
GCCCTGA | 65 | 1.2369128E-10 | 30.406378 | 11 |
ACGCCCT | 65 | 1.2369128E-10 | 30.406254 | 9 |
CGAGACT | 60 | 1.7444108E-9 | 29.938967 | 2 |
CGCCCTG | 70 | 2.928573E-10 | 28.234379 | 10 |
CTACGCC | 65 | 4.092726E-9 | 27.64194 | 7 |
TTGTTCC | 45 | 0.008036081 | 27.386711 | 37 |
CACTAAG | 75 | 4.4019544E-10 | 27.251774 | 30 |
CCCTGAA | 80 | 4.7293724E-11 | 26.950891 | 12 |
TACGCCC | 75 | 6.511982E-10 | 26.352087 | 8 |
GTGCTCT | 950 | 0.0 | 24.581467 | 2 |
GACGCTC | 220 | 0.0 | 24.49552 | 1 |
ACACGAC | 45 | 1.6145474E-4 | 23.956444 | 10 |
GACTACG | 85 | 2.7848728E-9 | 23.24738 | 5 |
GATCTCA | 70 | 2.5536428E-7 | 23.100761 | 12 |
TGCTCTT | 1015 | 0.0 | 23.007284 | 3 |