Basic Statistics
Measure | Value |
---|---|
Filename | 6_GCCAAT_L001_R1_001_trimmed.fq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 12409649 |
Sequences flagged as poor quality | 0 |
Sequence length | 20-43 |
%GC | 24 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTTAAGC | 80 | 0.0 | 33.954926 | 19 |
CGAGACT | 80 | 0.0 | 33.749847 | 2 |
TGTGCTC | 840 | 0.0 | 32.785564 | 1 |
CACTAAG | 85 | 0.0 | 32.709652 | 30 |
CTACGCC | 90 | 0.0 | 32.00424 | 7 |
ACGCCCT | 85 | 0.0 | 31.769167 | 9 |
ACTACGC | 85 | 0.0 | 31.767889 | 6 |
GAGACTA | 90 | 0.0 | 30.000225 | 3 |
GCATATC | 95 | 0.0 | 28.84962 | 24 |
TCTGCCG | 25 | 0.0062839654 | 28.801958 | 14 |
CCCTGAA | 95 | 0.0 | 28.425161 | 12 |
GACTACG | 95 | 0.0 | 28.421953 | 5 |
AGACTAC | 95 | 0.0 | 28.421267 | 4 |
CGCCCTG | 100 | 0.0 | 27.003468 | 10 |
CCTGAAC | 100 | 0.0 | 27.002815 | 13 |
CGAAACT | 50 | 8.76573E-6 | 26.025352 | 31 |
TACGCCC | 105 | 0.0 | 25.717897 | 8 |
GCCCTGA | 105 | 0.0 | 25.717897 | 11 |
CTGAACT | 110 | 0.0 | 24.547121 | 14 |
CTACACG | 60 | 1.6978065E-6 | 24.003372 | 8 |