FastQCFastQC Report
Tue 11 Sep 2018
6_GCCAAT_L001_R1_001_trimmed.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename6_GCCAAT_L001_R1_001_trimmed.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12409649
Sequences flagged as poor quality0
Sequence length20-43
%GC24

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTAAGC800.033.95492619
CGAGACT800.033.7498472
TGTGCTC8400.032.7855641
CACTAAG850.032.70965230
CTACGCC900.032.004247
ACGCCCT850.031.7691679
ACTACGC850.031.7678896
GAGACTA900.030.0002253
GCATATC950.028.8496224
TCTGCCG250.006283965428.80195814
CCCTGAA950.028.42516112
GACTACG950.028.4219535
AGACTAC950.028.4212674
CGCCCTG1000.027.00346810
CCTGAAC1000.027.00281513
CGAAACT508.76573E-626.02535231
TACGCCC1050.025.7178978
GCCCTGA1050.025.71789711
CTGAACT1100.024.54712114
CTACACG601.6978065E-624.0033728