Basic Statistics
Measure | Value |
---|---|
Filename | 7_CAGATC_L001_R1_001_trimmed.fq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 10253191 |
Sequences flagged as poor quality | 0 |
Sequence length | 20-43 |
%GC | 24 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GACGCTC | 230 | 0.0 | 30.619421 | 1 |
CGCTCTT | 240 | 0.0 | 29.343899 | 3 |
ACGCTCT | 245 | 0.0 | 28.007719 | 2 |
TGTGCTC | 260 | 0.0 | 27.780933 | 1 |
GATCTCT | 50 | 3.1818962E-4 | 21.672195 | 12 |
GCTCTTC | 665 | 0.0 | 20.365921 | 4 |
GATCTCA | 45 | 0.0044000703 | 20.066847 | 12 |
CTTTCCC | 45 | 0.004403673 | 20.064009 | 2 |
CTCTTCC | 710 | 0.0 | 19.075495 | 5 |
GTGCTCT | 395 | 0.0 | 18.286184 | 2 |
TCTTCCG | 705 | 0.0 | 18.187628 | 6 |
CGATCTC | 155 | 3.092282E-11 | 17.477577 | 11 |
CTTCCGA | 730 | 0.0 | 16.823 | 7 |
TGCTCTT | 405 | 0.0 | 16.497236 | 3 |
TTCCGAT | 775 | 0.0 | 15.846257 | 8 |
TCCGATC | 725 | 0.0 | 15.444477 | 9 |
CCGATCT | 730 | 0.0 | 15.338544 | 10 |
GTGTGCT | 90 | 9.282031E-4 | 14.173715 | 23 |
CGATCTG | 205 | 2.046363E-9 | 13.214753 | 11 |
CGATCTA | 240 | 1.2187229E-10 | 12.792615 | 11 |