FastQCFastQC Report
Tue 11 Sep 2018
7_CAGATC_L001_R1_001_trimmed.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename7_CAGATC_L001_R1_001_trimmed.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10253191
Sequences flagged as poor quality0
Sequence length20-43
%GC24

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACGCTC2300.030.6194211
CGCTCTT2400.029.3438993
ACGCTCT2450.028.0077192
TGTGCTC2600.027.7809331
GATCTCT503.1818962E-421.67219512
GCTCTTC6650.020.3659214
GATCTCA450.004400070320.06684712
CTTTCCC450.00440367320.0640092
CTCTTCC7100.019.0754955
GTGCTCT3950.018.2861842
TCTTCCG7050.018.1876286
CGATCTC1553.092282E-1117.47757711
CTTCCGA7300.016.8237
TGCTCTT4050.016.4972363
TTCCGAT7750.015.8462578
TCCGATC7250.015.4444779
CCGATCT7300.015.33854410
GTGTGCT909.282031E-414.17371523
CGATCTG2052.046363E-913.21475311
CGATCTA2401.2187229E-1012.79261511