Basic Statistics
Measure | Value |
---|---|
Filename | 8_ACTTGA_L001_R1_001_trimmed.fq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 14269815 |
Sequences flagged as poor quality | 0 |
Sequence length | 20-43 |
%GC | 24 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CCCTGAA | 35 | 2.9298635E-5 | 30.78328 | 12 |
GCCCTGA | 35 | 2.9299337E-5 | 30.783173 | 11 |
TGTGCTC | 1320 | 0.0 | 30.059484 | 1 |
CCTGAAC | 30 | 4.2900033E-4 | 29.926407 | 13 |
GACGCTC | 255 | 0.0 | 28.163263 | 1 |
ACTACGC | 40 | 7.285147E-5 | 26.933575 | 6 |
AGACAGC | 35 | 0.0010569522 | 25.648687 | 1 |
CACTAAG | 45 | 1.2768709E-4 | 24.79939 | 30 |
ACGCCCT | 45 | 1.6211206E-4 | 23.94213 | 9 |
CGCCCTG | 45 | 1.6211206E-4 | 23.94213 | 10 |
CTACGCC | 45 | 1.621159E-4 | 23.942047 | 7 |
GACAGCA | 40 | 0.0022997463 | 22.4426 | 2 |
CTCTTCG | 65 | 3.4836557E-6 | 22.09764 | 5 |
TACGCCC | 50 | 3.3080825E-4 | 21.547918 | 8 |
GACTACG | 50 | 3.3109036E-4 | 21.545198 | 5 |
AGACTAC | 50 | 3.3112173E-4 | 21.544897 | 4 |
CGAGACT | 50 | 3.3112173E-4 | 21.544897 | 2 |
GTGCTCT | 1895 | 0.0 | 21.033276 | 2 |
ACGCTCT | 345 | 0.0 | 19.775509 | 2 |
TGCTCTT | 1985 | 0.0 | 19.446486 | 3 |