FastQCFastQC Report
Tue 11 Sep 2018
8_ACTTGA_L001_R1_001_trimmed.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename8_ACTTGA_L001_R1_001_trimmed.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14269815
Sequences flagged as poor quality0
Sequence length20-43
%GC24

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCTGAA352.9298635E-530.7832812
GCCCTGA352.9299337E-530.78317311
TGTGCTC13200.030.0594841
CCTGAAC304.2900033E-429.92640713
GACGCTC2550.028.1632631
ACTACGC407.285147E-526.9335756
AGACAGC350.001056952225.6486871
CACTAAG451.2768709E-424.7993930
ACGCCCT451.6211206E-423.942139
CGCCCTG451.6211206E-423.9421310
CTACGCC451.621159E-423.9420477
GACAGCA400.002299746322.44262
CTCTTCG653.4836557E-622.097645
TACGCCC503.3080825E-421.5479188
GACTACG503.3109036E-421.5451985
AGACTAC503.3112173E-421.5448974
CGAGACT503.3112173E-421.5448972
GTGCTCT18950.021.0332762
ACGCTCT3450.019.7755092
TGCTCTT19850.019.4464863