Bismark Processing Report


Data processed at 01:47 on 2018-09-13


Sequences analysed in total 9365330
Single-end alignments with a unique best hit 4066105
Sequences without alignments under any condition 2378548
Sequences that did not map uniquely 2920677
Genomic sequence context not extractable (edges of chromosomes) 7494

Cytosine Methylation

Total C's analysed 31606927
Methylated C's in CpG context 1332201
Methylated C's in CHG context 73999
Methylated C's in CHH context 573400
Methylated C's in Unknown context 1354
Unmethylated C's in CpG context 3374891
Unmethylated C's in CHG context 6217392
Unmethylated C's in CHH context 20035044
Unmethylated C's in Unknown context 27054
Percentage methylation (CpG context) 28.3%
Percentage methylation (CHG context) 1.2%
Percentage methylation (CHH context) 2.8%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 2002168 original top strand
CTOT 27767 complementary to original top strand
CTOB 28854 complementary to original bottom strand
OB 1999822 original bottom strand