Bismark Processing Report


Data processed at 01:47 on 2018-09-13


Sequences analysed in total 11879398
Single-end alignments with a unique best hit 5123570
Sequences without alignments under any condition 3005093
Sequences that did not map uniquely 3750735
Genomic sequence context not extractable (edges of chromosomes) 9610

Cytosine Methylation

Total C's analysed 39860399
Methylated C's in CpG context 1631498
Methylated C's in CHG context 150007
Methylated C's in CHH context 987546
Methylated C's in Unknown context 1682
Unmethylated C's in CpG context 4275154
Unmethylated C's in CHG context 7751150
Unmethylated C's in CHH context 25065044
Unmethylated C's in Unknown context 32864
Percentage methylation (CpG context) 27.6%
Percentage methylation (CHG context) 1.9%
Percentage methylation (CHH context) 3.8%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 2501682 original top strand
CTOT 58688 complementary to original top strand
CTOB 56574 complementary to original bottom strand
OB 2497016 original bottom strand