Bismark Processing Report


Data processed at 01:47 on 2018-09-13


Sequences analysed in total 11758842
Single-end alignments with a unique best hit 5067939
Sequences without alignments under any condition 3039170
Sequences that did not map uniquely 3651733
Genomic sequence context not extractable (edges of chromosomes) 9309

Cytosine Methylation

Total C's analysed 39478511
Methylated C's in CpG context 1646056
Methylated C's in CHG context 90688
Methylated C's in CHH context 743142
Methylated C's in Unknown context 1690
Unmethylated C's in CpG context 4315310
Unmethylated C's in CHG context 7765500
Unmethylated C's in CHH context 24917815
Unmethylated C's in Unknown context 35401
Percentage methylation (CpG context) 27.6%
Percentage methylation (CHG context) 1.2%
Percentage methylation (CHH context) 2.9%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 2497983 original top strand
CTOT 35769 complementary to original top strand
CTOB 36911 complementary to original bottom strand
OB 2487967 original bottom strand