4_TGACCA_L001_R1_001_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 4403635 lines in total Total number of methylation call strings processed: 4403635 Final Cytosine Methylation Report ================================= Total number of C's analysed: 34066959 Total methylated C's in CpG context: 1413462 Total methylated C's in CHG context: 62408 Total methylated C's in CHH context: 464293 Total C to T conversions in CpG context: 3554680 Total C to T conversions in CHG context: 6618660 Total C to T conversions in CHH context: 21953456 C methylated in CpG context: 28.5% C methylated in CHG context: 0.9% C methylated in CHH context: 2.1%