Bismark Processing Report


Data processed at 01:47 on 2018-09-13


Sequences analysed in total 11560658
Single-end alignments with a unique best hit 5038185
Sequences without alignments under any condition 2902106
Sequences that did not map uniquely 3620367
Genomic sequence context not extractable (edges of chromosomes) 9284

Cytosine Methylation

Total C's analysed 39013786
Methylated C's in CpG context 1647867
Methylated C's in CHG context 75737
Methylated C's in CHH context 679888
Methylated C's in Unknown context 1531
Unmethylated C's in CpG context 4125544
Unmethylated C's in CHG context 7644415
Unmethylated C's in CHH context 24840335
Unmethylated C's in Unknown context 32365
Percentage methylation (CpG context) 28.5%
Percentage methylation (CHG context) 1.0%
Percentage methylation (CHH context) 2.7%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 2483585 original top strand
CTOT 33228 complementary to original top strand
CTOB 33566 complementary to original bottom strand
OB 2478522 original bottom strand