7_CAGATC_L001_R1_001_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 3929969 lines in total Total number of methylation call strings processed: 3929969 Final Cytosine Methylation Report ================================= Total number of C's analysed: 30439239 Total methylated C's in CpG context: 1204918 Total methylated C's in CHG context: 55273 Total methylated C's in CHH context: 425007 Total C to T conversions in CpG context: 3248204 Total C to T conversions in CHG context: 5929753 Total C to T conversions in CHH context: 19576084 C methylated in CpG context: 27.1% C methylated in CHG context: 0.9% C methylated in CHH context: 2.1%