Bismark Processing Report


Data processed at 01:47 on 2018-09-13


Sequences analysed in total 10253191
Single-end alignments with a unique best hit 4435070
Sequences without alignments under any condition 2594667
Sequences that did not map uniquely 3223454
Genomic sequence context not extractable (edges of chromosomes) 8355

Cytosine Methylation

Total C's analysed 34295566
Methylated C's in CpG context 1401145
Methylated C's in CHG context 63667
Methylated C's in CHH context 555550
Methylated C's in Unknown context 1202
Unmethylated C's in CpG context 3661318
Unmethylated C's in CHG context 6758906
Unmethylated C's in CHH context 21854980
Unmethylated C's in Unknown context 27615
Percentage methylation (CpG context) 27.7%
Percentage methylation (CHG context) 0.9%
Percentage methylation (CHH context) 2.5%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 2187545 original top strand
CTOT 27236 complementary to original top strand
CTOB 27130 complementary to original bottom strand
OB 2184804 original bottom strand