Bismark Processing Report


Data processed at 01:47 on 2018-09-13


Sequences analysed in total 14269815
Single-end alignments with a unique best hit 6097629
Sequences without alignments under any condition 3681763
Sequences that did not map uniquely 4490423
Genomic sequence context not extractable (edges of chromosomes) 11428

Cytosine Methylation

Total C's analysed 47411889
Methylated C's in CpG context 1798021
Methylated C's in CHG context 112507
Methylated C's in CHH context 860463
Methylated C's in Unknown context 1784
Unmethylated C's in CpG context 5295215
Unmethylated C's in CHG context 9386854
Unmethylated C's in CHH context 29958829
Unmethylated C's in Unknown context 39384
Percentage methylation (CpG context) 25.3%
Percentage methylation (CHG context) 1.2%
Percentage methylation (CHH context) 2.8%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 2996945 original top strand
CTOT 49453 complementary to original top strand
CTOB 47964 complementary to original bottom strand
OB 2991839 original bottom strand