Bismark Processing Report


Data processed at 22:30 on 2018-09-13


Sequences analysed in total 11879398
Single-end alignments with a unique best hit 6229488
Sequences without alignments under any condition 1480776
Sequences that did not map uniquely 4169134
Genomic sequence context not extractable (edges of chromosomes) 15981

Cytosine Methylation

Total C's analysed 48108016
Methylated C's in CpG context 1870637
Methylated C's in CHG context 202679
Methylated C's in CHH context 1823533
Methylated C's in Unknown context 26029
Unmethylated C's in CpG context 5123537
Unmethylated C's in CHG context 9169356
Unmethylated C's in CHH context 29918274
Unmethylated C's in Unknown context 143090
Percentage methylation (CpG context) 26.7%
Percentage methylation (CHG context) 2.2%
Percentage methylation (CHH context) 5.7%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 2964533 original top strand
CTOT 140820 complementary to original top strand
CTOB 138730 complementary to original bottom strand
OB 2969424 original bottom strand