Bismark Processing Report


Data processed at 22:30 on 2018-09-13


Sequences analysed in total 11758842
Single-end alignments with a unique best hit 6206512
Sequences without alignments under any condition 1478224
Sequences that did not map uniquely 4074106
Genomic sequence context not extractable (edges of chromosomes) 15657

Cytosine Methylation

Total C's analysed 48057963
Methylated C's in CpG context 1896372
Methylated C's in CHG context 135635
Methylated C's in CHH context 1558137
Methylated C's in Unknown context 26480
Unmethylated C's in CpG context 5264793
Unmethylated C's in CHG context 9257683
Unmethylated C's in CHH context 29945343
Unmethylated C's in Unknown context 154704
Percentage methylation (CpG context) 26.5%
Percentage methylation (CHG context) 1.4%
Percentage methylation (CHH context) 4.9%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 2980075 original top strand
CTOT 115504 complementary to original top strand
CTOB 117239 complementary to original bottom strand
OB 2978037 original bottom strand