Bismark Processing Report


Data processed at 22:30 on 2018-09-13


Sequences analysed in total 12409649
Single-end alignments with a unique best hit 6451725
Sequences without alignments under any condition 1647581
Sequences that did not map uniquely 4310343
Genomic sequence context not extractable (edges of chromosomes) 16975

Cytosine Methylation

Total C's analysed 49744541
Methylated C's in CpG context 1895479
Methylated C's in CHG context 178428
Methylated C's in CHH context 1839322
Methylated C's in Unknown context 28097
Unmethylated C's in CpG context 5436344
Unmethylated C's in CHG context 9548299
Unmethylated C's in CHH context 30846669
Unmethylated C's in Unknown context 154404
Percentage methylation (CpG context) 25.9%
Percentage methylation (CHG context) 1.8%
Percentage methylation (CHH context) 5.6%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 3070334 original top strand
CTOT 143812 complementary to original top strand
CTOB 138701 complementary to original bottom strand
OB 3081903 original bottom strand