Bismark Processing Report


Data processed at 22:30 on 2018-09-13


Sequences analysed in total 10253191
Single-end alignments with a unique best hit 5382140
Sequences without alignments under any condition 1289656
Sequences that did not map uniquely 3581395
Genomic sequence context not extractable (edges of chromosomes) 14015

Cytosine Methylation

Total C's analysed 41275205
Methylated C's in CpG context 1610454
Methylated C's in CHG context 98157
Methylated C's in CHH context 1236583
Methylated C's in Unknown context 21382
Unmethylated C's in CpG context 4341462
Unmethylated C's in CHG context 7971801
Unmethylated C's in CHH context 26016748
Unmethylated C's in Unknown context 121435
Percentage methylation (CpG context) 27.1%
Percentage methylation (CHG context) 1.2%
Percentage methylation (CHH context) 4.5%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 2588855 original top strand
CTOT 95465 complementary to original top strand
CTOB 94923 complementary to original bottom strand
OB 2588882 original bottom strand