Bismark Processing Report


Data processed at 22:30 on 2018-09-13


Sequences analysed in total 14269815
Single-end alignments with a unique best hit 7450760
Sequences without alignments under any condition 1807284
Sequences that did not map uniquely 5011771
Genomic sequence context not extractable (edges of chromosomes) 19179

Cytosine Methylation

Total C's analysed 57476895
Methylated C's in CpG context 2072002
Methylated C's in CHG context 165895
Methylated C's in CHH context 1839579
Methylated C's in Unknown context 31780
Unmethylated C's in CpG context 6356294
Unmethylated C's in CHG context 11147692
Unmethylated C's in CHH context 35895433
Unmethylated C's in Unknown context 174320
Percentage methylation (CpG context) 24.6%
Percentage methylation (CHG context) 1.5%
Percentage methylation (CHH context) 4.9%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 3567172 original top strand
CTOT 149624 complementary to original top strand
CTOB 148072 complementary to original bottom strand
OB 3566713 original bottom strand