File Total Reads Aligned Reads Unaligned Reads Ambiguously Aligned Reads No Genomic Sequence Duplicate Reads (removed) Unique Reads (remaining) Total Cs Methylated CpGs Unmethylated CpGs Methylated CpHs Unmethylated CpHs Methylated CHHs Unmethylated CHHs 1_ATCACG_L001_R1_001_trimmed_bismark_bt2.bam 9365330 4935608 1167257 3249685 12780 659340 4276268 33065514 1293575 3446362 83939 6279932 923939 21037767 2_CGATGT_L001_R1_001_trimmed_bismark_bt2.bam 11879398 6213507 1480776 4169134 15981 914553 5298954 40962986 1562313 4277543 168829 7678029 1402349 25873923 3_TTAGGC_L001_R1_001_trimmed_bismark_bt2.bam 11758842 6190855 1478224 4074106 15657 956462 5234393 40389791 1578160 4204481 96667 7678499 1114187 25717797 4_TGACCA_L001_R1_001_trimmed_bismark_bt2.bam 11560658 6104568 1415586 4024890 15614 848302 5256266 40459735 1599145 4170310 93164 7658490 1070687 25867939 5_ACAGTG_L001_R1_001_trimmed_bismark_bt2.bam 12502181 6548512 1566378 4370318 16973 1011631 5536881 42722256 1637553 4495929 120623 8119549 1293128 27055474 6_GCCAAT_L001_R1_001_trimmed_bismark_bt2.bam 12409649 6434750 1647581 4310343 16975 954427 5480323 42224295 1571670 4477560 146137 7960792 1398040 26670096 7_CAGATC_L001_R1_001_trimmed_bismark_bt2.bam 10253191 5368125 1289656 3581395 14015 673131 4694994 36167085 1367537 3801524 82509 6865817 984228 23065470 8_ACTTGA_L001_R1_001_trimmed_bismark_bt2.bam 14269815 7431581 1807284 5011771 19179 1144391 6287190 48554921 1709244 5260924 135507 9225191 1406003 30818052