owl/Athaliana/20180919_oly_transcriptome_bowtie2/

Mapping Olympia oyster transcriptome assembly (Trinity; 20180827) to Olympia oyster genome v081.

In preparation for making bedgraphs of transcriptome.

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FILES:

- 20180919_Olurida_v081.bam: Converted SAM file to BAM file.

- 20180919_Olurida_v081.sam: Default SAM file output by bowtie2.

- 20180919_Olurida_v081.sorted.bam: Sorted BAM file.

- 20180919_Olurida_v081.sorted.bam.bai: Sorted BAM file indexed for use in IGV.

- 20180919_oly_transcriptome_bowtie2.sh: Mox batch script file for running commands for bowtie2 and samtools.

- slurm-313230.out: The Mox standard output file.

- system_path.log: A text file attempting to document various program versions being used by Mox.