# This file contains information about your system that is useful for # diagnosing a problem you may have. For technical assistance, please # contact the Illumina Customer Support team # and send them this file. $_System = { 'PID' : '78563', 'OS' : 'linux', 'PERL_VERSION' : 'v5.10.1', 'PERL_EXECUTABLE' : '/usr/bin/perl' }; $_ID-string = 'bcl2fastq-1.8.4'; $_Program = '/usr/local/bin/configureBclToFastq.pl'; $_Command-line = [ '--input-dir', './Data/Intensities/BaseCalls', '--output-dir', './UnalignedDual5', '--mismatches', '1', '--use-bases-mask=Y*,I6n*,I5n*,Y*', '--no-eamss', '--ignore-missing-stats', '--ignore-missing-bcl', '--ignore-missing-control', '--sample-sheet', './Data/Intensities/BaseCalls/SampleSheet5.csv', '--fastq-cluster-count', '0' ]; $_Locations = [ '/usr/local/lib/bcl2fastq-1.8.4/perl', '/usr/local/lib64/perl5', '/usr/local/share/perl5', '/usr/lib64/perl5/vendor_perl', '/usr/share/perl5/vendor_perl', '/usr/lib64/perl5', '/usr/share/perl5', '.' ]; $_Modules = [ '/usr/lib64/perl5/Config.pm', '/usr/lib64/perl5/Config_git.pl', '/usr/lib64/perl5/Config_heavy.pl', '/usr/lib64/perl5/Cwd.pm', '/usr/lib64/perl5/Data/Dumper.pm', '/usr/lib64/perl5/DynaLoader.pm', '/usr/lib64/perl5/Fcntl.pm', '/usr/lib64/perl5/File/Glob.pm', '/usr/lib64/perl5/File/Spec.pm', '/usr/lib64/perl5/File/Spec/Unix.pm', '/usr/lib64/perl5/IO.pm', '/usr/lib64/perl5/IO/File.pm', '/usr/lib64/perl5/IO/Handle.pm', '/usr/lib64/perl5/IO/Seekable.pm', '/usr/lib64/perl5/List/Util.pm', '/usr/lib64/perl5/POSIX.pm', '/usr/lib64/perl5/Scalar/Util.pm', '/usr/lib64/perl5/XML/LibXML.pm', '/usr/lib64/perl5/XML/LibXML/Boolean.pm', '/usr/lib64/perl5/XML/LibXML/Error.pm', '/usr/lib64/perl5/XML/LibXML/Literal.pm', '/usr/lib64/perl5/XML/LibXML/NodeList.pm', '/usr/lib64/perl5/XML/LibXML/Number.pm', '/usr/lib64/perl5/XML/LibXML/SAX.pm', '/usr/lib64/perl5/XML/LibXML/XPathContext.pm', '/usr/lib64/perl5/XSLoader.pm', '/usr/lib64/perl5/auto/POSIX/autosplit.ix', '/usr/lib64/perl5/auto/POSIX/load_imports.al', '/usr/lib64/perl5/lib.pm', '/usr/lib64/perl5/re.pm', '/usr/local/lib/bcl2fastq-1.8.4/perl/Casava/Alignment.pm', '/usr/local/lib/bcl2fastq-1.8.4/perl/Casava/Alignment/Config.pm', '/usr/local/lib/bcl2fastq-1.8.4/perl/Casava/BaseCalls.pm', '/usr/local/lib/bcl2fastq-1.8.4/perl/Casava/Common/IOLib.pm', '/usr/local/lib/bcl2fastq-1.8.4/perl/Casava/Common/Log.pm', '/usr/local/lib/bcl2fastq-1.8.4/perl/Casava/Common/Utils.pm', '/usr/local/lib/bcl2fastq-1.8.4/perl/Casava/Demultiplex.pm', '/usr/local/lib/bcl2fastq-1.8.4/perl/Casava/Demultiplex/DemultiplexConfig.pm', '/usr/local/lib/bcl2fastq-1.8.4/perl/Casava/Demultiplex/Dx.pm', '/usr/local/lib/bcl2fastq-1.8.4/perl/Casava/Demultiplex/SampleSheet.pm', '/usr/local/lib/bcl2fastq-1.8.4/perl/Casava/Demultiplex/SampleSheet/Csv.pm', '/usr/local/lib/bcl2fastq-1.8.4/perl/Casava/Demultiplex/SampleSheet/Make.pm', '/usr/local/lib/bcl2fastq-1.8.4/perl/Casava/Demultiplex/SampleSheet/Xml.pm', '/usr/local/lib/bcl2fastq-1.8.4/perl/Casava/Intensities.pm', '/usr/share/perl5/AutoLoader.pm', '/usr/share/perl5/Carp.pm', '/usr/share/perl5/Exporter.pm', '/usr/share/perl5/Exporter/Heavy.pm', '/usr/share/perl5/File/Basename.pm', '/usr/share/perl5/File/Copy.pm', '/usr/share/perl5/File/Path.pm', '/usr/share/perl5/Getopt/Long.pm', '/usr/share/perl5/Pod/Escapes.pm', '/usr/share/perl5/Pod/InputObjects.pm', '/usr/share/perl5/Pod/Parser.pm', '/usr/share/perl5/Pod/Select.pm', '/usr/share/perl5/Pod/Simple.pm', '/usr/share/perl5/Pod/Simple/BlackBox.pm', '/usr/share/perl5/Pod/Simple/LinkSection.pm', '/usr/share/perl5/Pod/Text.pm', '/usr/share/perl5/Pod/Usage.pm', '/usr/share/perl5/SelectSaver.pm', '/usr/share/perl5/Symbol.pm', '/usr/share/perl5/Term/ANSIColor.pm', '/usr/share/perl5/Text/ParseWords.pm', '/usr/share/perl5/Tie/Hash.pm', '/usr/share/perl5/UNIVERSAL.pm', '/usr/share/perl5/XML/SAX.pm', '/usr/share/perl5/XML/SAX/Base.pm', '/usr/share/perl5/XML/SAX/Exception.pm', '/usr/share/perl5/XML/SAX/ParserFactory.pm', '/usr/share/perl5/XML/Simple.pm', '/usr/share/perl5/base.pm', '/usr/share/perl5/bytes.pm', '/usr/share/perl5/constant.pm', '/usr/share/perl5/integer.pm', '/usr/share/perl5/overload.pm', '/usr/share/perl5/strict.pm', '/usr/share/perl5/unicore/Canonical.pl', '/usr/share/perl5/unicore/Exact.pl', '/usr/share/perl5/unicore/PVA.pl', '/usr/share/perl5/unicore/To/Fold.pl', '/usr/share/perl5/unicore/lib/gc_sc/Digit.pl', '/usr/share/perl5/unicore/lib/gc_sc/SpacePer.pl', '/usr/share/perl5/utf8.pm', '/usr/share/perl5/utf8_heavy.pl', '/usr/share/perl5/vars.pm', '/usr/share/perl5/warnings.pm', '/usr/share/perl5/warnings/register.pm' ]; $_Environment = { 'HOME' : '/home/yogesh.dhungana', 'QTINC' : '/usr/lib64/qt-3.3/include', 'SSH_CLIENT' : '10.105.0.130 50043 22', 'SSH_ASKPASS' : '/usr/libexec/openssh/gnome-ssh-askpass', 'CVS_RSH' : 'ssh', 'SSH_CONNECTION' : '10.105.0.130 50043 10.105.0.220 22', 'AWS_ACCESS_KEY_ID' : 'AKIAJYPS7P4VYPSF6AWQ', 'DISPLAY' : 'localhost:10.0', 'AWS_SECRET_ACCESS_KEY' : '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', 'LESSOPEN' : '|/usr/bin/lesspipe.sh %s', 'MAIL' : '/var/spool/mail/yogesh.dhungana', 'SSH_AUTH_SOCK' : '/tmp/ssh-IaJzN40379/agent.40379', 'PWD' : '/ngs-seqdata/HiSeq/151218_SN1123_0456_AHFYH7BCXX', 'QTDIR' : '/usr/lib64/qt-3.3', 'LANG' : 'en_US.UTF-8', 'USER' : 'yogesh.dhungana', 'G_BROKEN_FILENAMES' : '1', 'LOGNAME' : 'yogesh.dhungana', 'SHLVL' : '1', 'HOSTNAME' : 'GWLINUX02', 'OLDPWD' : '/ngs-seqdata/HiSeq/151218_SN1123_0456_AHFYH7BCXX/UnalignedDual7', '_' : '/usr/local/bin/configureBclToFastq.pl', 'QTLIB' : '/usr/lib64/qt-3.3/lib', 'PATH' : '/usr/lib64/qt-3.3/bin:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/opt/dell/srvadmin/bin:/home/yogesh.dhungana/bin', 'LS_COLORS' : 'rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;05;37;41:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lz=01;31:*.xz=01;31:*.bz2=01;31:*.tbz=01;31:*.tbz2=01;31:*.bz=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.rar=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.axv=01;35:*.anx=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.axa=01;36:*.oga=01;36:*.spx=01;36:*.xspf=01;36:', 'SHELL' : '/bin/bash', 'ROOTSYS' : '/usr/local/src/root/', 'HISTSIZE' : '1000', 'TERM' : 'xterm', 'SSH_TTY' : '/dev/pts/0', 'HISTCONTROL' : 'ignoredups' }; $_Mask = 'yyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyy,iiiiiinn,iiiiinnn'; $_Barcodes/Lanes = { '1' => { 'ATCACG-TCATG' => { 'CONTROL' => 'N', 'SPECIES' => 'NA', 'DESCRIPTION' => '', 'SAMPLE_ID' => 'SS3-15w', 'PROJECT_ID' => 'UofWashington' }, 'GATCAG-TCATG' => { 'CONTROL' => 'N', 'SPECIES' => 'NA', 'DESCRIPTION' => '', 'SAMPLE_ID' => 'NF4-10', 'PROJECT_ID' => 'UofWashington' }, 'ACAGTG-GACGT' => { 'CONTROL' => 'N', 'SPECIES' => 'NA', 'DESCRIPTION' => '', 'SAMPLE_ID' => 'HC4-5w', 'PROJECT_ID' => 'UofWashington' }, 'TGACCA-TCATG' => { 'CONTROL' => 'N', 'SPECIES' => 'NA', 'DESCRIPTION' => '', 'SAMPLE_ID' => 'HC4-18', 'PROJECT_ID' => 'UofWashington' }, 'Undetermined' => { 'CONTROL' => 'N', 'SPECIES' => 'unknown', 'DESCRIPTION' => 'Clusters with unmatched barcodes for lane 1', 'SAMPLE_ID' => 'lane1', 'PROJECT_ID' => 'Undetermined_indices' }, 'GGCTAC-GACGT' => { 'CONTROL' => 'N', 'SPECIES' => 'NA', 'DESCRIPTION' => '', 'SAMPLE_ID' => 'HC4-12w', 'PROJECT_ID' => 'UofWashington' }, 'GGCTAC-TCATG' => { 'CONTROL' => 'N', 'SPECIES' => 'NA', 'DESCRIPTION' => '', 'SAMPLE_ID' => 'SS4-9', 'PROJECT_ID' => 'UofWashington' }, 'TTAGGC-TCATG' => { 'CONTROL' => 'N', 'SPECIES' => 'NA', 'DESCRIPTION' => '', 'SAMPLE_ID' => 'NF4-6', 'PROJECT_ID' => 'UofWashington' }, 'GCCAAT-TCATG' => { 'CONTROL' => 'N', 'SPECIES' => 'NA', 'DESCRIPTION' => '', 'SAMPLE_ID' => 'NF4-12', 'PROJECT_ID' => 'UofWashington' }, 'GATCAG-GACGT' => { 'CONTROL' => 'N', 'SPECIES' => 'NA', 'DESCRIPTION' => '', 'SAMPLE_ID' => 'HC4-1w', 'PROJECT_ID' => 'UofWashington' }, 'CAGATC-GACGT' => { 'CONTROL' => 'N', 'SPECIES' => 'NA', 'DESCRIPTION' => '', 'SAMPLE_ID' => 'HC4-13w', 'PROJECT_ID' => 'UofWashington' }, 'ACTTGA-GACGT' => { 'CONTROL' => 'N', 'SPECIES' => 'NA', 'DESCRIPTION' => '', 'SAMPLE_ID' => 'SS4-1Aw', 'PROJECT_ID' => 'UofWashington' }, 'TTAGGC-GACGT' => { 'CONTROL' => 'N', 'SPECIES' => 'NA', 'DESCRIPTION' => '', 'SAMPLE_ID' => 'NF4-3', 'PROJECT_ID' => 'UofWashington' }, 'TAGCTT-TCATG' => { 'CONTROL' => 'N', 'SPECIES' => 'NA', 'DESCRIPTION' => '', 'SAMPLE_ID' => 'SS3-16w', 'PROJECT_ID' => 'UofWashington' } } };