Lane | Sample ID | Sample Ref | Index | Description | Control | Project | Yield (Mbases) | % PF | # Reads | % of raw clusters per lane | % Perfect Index Reads | % One Mismatch Reads (Index) | % of >= Q30 Bases (PF) | Mean Quality Score (PF) |
---|
1 | HC1-4 | NA | GGCTAC-TCATG | N | UofWashington | 117 | 100.00 | 2,294,290 | 1.13 | 98.27 | 1.70 | 94.58 | 37.87 | |
1 | HC1-9 | NA | GGCTAC-GACGT | N | UofWashington | 152 | 100.00 | 2,973,594 | 1.47 | 97.92 | 2.04 | 94.22 | 37.77 | |
1 | HC3-14 | NA | TTAGGC-GACGT | N | UofWashington | 158 | 100.00 | 3,103,529 | 1.53 | 98.63 | 1.35 | 94.37 | 37.80 | |
1 | HC5-10 | NA | TTAGGC-TCATG | N | UofWashington | 110 | 100.00 | 2,152,891 | 1.06 | 98.46 | 1.52 | 94.47 | 37.83 | |
1 | HC5-11 | NA | ACAGTG-GACGT | N | UofWashington | 173 | 100.00 | 3,397,537 | 1.68 | 98.42 | 1.55 | 94.56 | 37.87 | |
1 | HC5-13 | NA | CGATGT-GACGT | N | UofWashington | 253 | 100.00 | 4,969,598 | 2.46 | 98.69 | 1.29 | 94.61 | 37.88 | |
1 | HC5-4 | NA | CAGATC-TCATG | N | UofWashington | 79 | 100.00 | 1,540,960 | 0.76 | 98.08 | 1.89 | 94.55 | 37.86 | |
1 | NF3-1 | NA | ACTTGA-GACGT | N | UofWashington | 134 | 100.00 | 2,629,046 | 1.30 | 98.25 | 1.72 | 94.60 | 37.88 | |
1 | NF5-10 | NA | TGACCA-GACGT | N | UofWashington | 126 | 100.00 | 2,461,189 | 1.22 | 98.22 | 1.75 | 94.59 | 37.88 | |
1 | NF5-13 | NA | TAGCTT-GACGT | N | UofWashington | 151 | 100.00 | 2,955,623 | 1.46 | 98.37 | 1.60 | 94.59 | 37.88 | |
1 | NF5-3 | NA | CGATGT-TCATG | N | UofWashington | 163 | 100.00 | 3,199,912 | 1.58 | 98.52 | 1.45 | 94.70 | 37.91 | |
1 | NF5-4 | NA | GATCAG-TCATG | N | UofWashington | 126 | 100.00 | 2,466,597 | 1.22 | 98.43 | 1.54 | 94.69 | 37.90 | |
1 | NF5-6 | NA | GCCAAT-GACGT | N | UofWashington | 150 | 100.00 | 2,931,830 | 1.45 | 98.16 | 1.80 | 94.53 | 37.86 | |
1 | SS2-14 | NA | CTTGTA-GACGT | N | UofWashington | 2 | 100.00 | 29,745 | 0.01 | 54.15 | 44.47 | 90.87 | 36.91 | |
1 | SS5-11 | NA | GATCAG-GACGT | N | UofWashington | 97 | 100.00 | 1,910,813 | 0.94 | 98.48 | 1.49 | 94.66 | 37.90 | |
1 | SS5-12 | NA | CAGATC-GACGT | N | UofWashington | 100 | 100.00 | 1,959,580 | 0.97 | 98.17 | 1.79 | 94.50 | 37.85 | |
1 | SS5-13A | NA | CTTGTA-TCATG | N | UofWashington | 60 | 100.00 | 1,179,562 | 0.58 | 98.14 | 1.84 | 94.68 | 37.90 | |
1 | SS5-16 | NA | TGACCA-TCATG | N | UofWashington | 38 | 100.00 | 737,739 | 0.36 | 97.88 | 2.09 | 94.68 | 37.90 | |
1 | SS5-3 | NA | ACTTGA-TCATG | N | UofWashington | 0 | 100.00 | 7,304 | 0.00 | 79.59 | 19.46 | 91.47 | 37.02 | |
1 | SS5-7 | NA | ATCACG-TCATG | N | UofWashington | 184 | 100.00 | 3,605,544 | 1.78 | 98.31 | 1.66 | 94.64 | 37.89 | |
1 | lane1 | unknown | Undetermined | Clusters with unmatched barcodes for lane 1 | N | Undetermined_indices | 7,942 | 100.00 | 155,722,611 | 77.00 | 0.00 | 0.00 | 94.52 | 37.86 |
SampleID | Recipe | Operator | Directory |
---|
HC1-4 | /ngs-seqdata/HiSeq/151221_SN1123_0457_AHCTV7BCXX/UnalignedDual5/Project_UofWashington/Sample_HC1-4 | ||
HC1-9 | /ngs-seqdata/HiSeq/151221_SN1123_0457_AHCTV7BCXX/UnalignedDual5/Project_UofWashington/Sample_HC1-9 | ||
HC3-14 | /ngs-seqdata/HiSeq/151221_SN1123_0457_AHCTV7BCXX/UnalignedDual5/Project_UofWashington/Sample_HC3-14 | ||
HC5-10 | /ngs-seqdata/HiSeq/151221_SN1123_0457_AHCTV7BCXX/UnalignedDual5/Project_UofWashington/Sample_HC5-10 | ||
HC5-11 | /ngs-seqdata/HiSeq/151221_SN1123_0457_AHCTV7BCXX/UnalignedDual5/Project_UofWashington/Sample_HC5-11 | ||
HC5-13 | /ngs-seqdata/HiSeq/151221_SN1123_0457_AHCTV7BCXX/UnalignedDual5/Project_UofWashington/Sample_HC5-13 | ||
HC5-4 | /ngs-seqdata/HiSeq/151221_SN1123_0457_AHCTV7BCXX/UnalignedDual5/Project_UofWashington/Sample_HC5-4 | ||
NF3-1 | /ngs-seqdata/HiSeq/151221_SN1123_0457_AHCTV7BCXX/UnalignedDual5/Project_UofWashington/Sample_NF3-1 | ||
NF5-10 | /ngs-seqdata/HiSeq/151221_SN1123_0457_AHCTV7BCXX/UnalignedDual5/Project_UofWashington/Sample_NF5-10 | ||
NF5-13 | /ngs-seqdata/HiSeq/151221_SN1123_0457_AHCTV7BCXX/UnalignedDual5/Project_UofWashington/Sample_NF5-13 | ||
NF5-3 | /ngs-seqdata/HiSeq/151221_SN1123_0457_AHCTV7BCXX/UnalignedDual5/Project_UofWashington/Sample_NF5-3 | ||
NF5-4 | /ngs-seqdata/HiSeq/151221_SN1123_0457_AHCTV7BCXX/UnalignedDual5/Project_UofWashington/Sample_NF5-4 | ||
NF5-6 | /ngs-seqdata/HiSeq/151221_SN1123_0457_AHCTV7BCXX/UnalignedDual5/Project_UofWashington/Sample_NF5-6 | ||
SS2-14 | /ngs-seqdata/HiSeq/151221_SN1123_0457_AHCTV7BCXX/UnalignedDual5/Project_UofWashington/Sample_SS2-14 | ||
SS5-11 | /ngs-seqdata/HiSeq/151221_SN1123_0457_AHCTV7BCXX/UnalignedDual5/Project_UofWashington/Sample_SS5-11 | ||
SS5-12 | /ngs-seqdata/HiSeq/151221_SN1123_0457_AHCTV7BCXX/UnalignedDual5/Project_UofWashington/Sample_SS5-12 | ||
SS5-13A | /ngs-seqdata/HiSeq/151221_SN1123_0457_AHCTV7BCXX/UnalignedDual5/Project_UofWashington/Sample_SS5-13A | ||
SS5-16 | /ngs-seqdata/HiSeq/151221_SN1123_0457_AHCTV7BCXX/UnalignedDual5/Project_UofWashington/Sample_SS5-16 | ||
SS5-3 | /ngs-seqdata/HiSeq/151221_SN1123_0457_AHCTV7BCXX/UnalignedDual5/Project_UofWashington/Sample_SS5-3 | ||
SS5-7 | /ngs-seqdata/HiSeq/151221_SN1123_0457_AHCTV7BCXX/UnalignedDual5/Project_UofWashington/Sample_SS5-7 | ||
lane1 | /ngs-seqdata/HiSeq/151221_SN1123_0457_AHCTV7BCXX/UnalignedDual5/Undetermined_indices/Sample_lane1 |
bcl2fastq-1.8.4