All statistics are based on contigs of size >= 500 bp, unless otherwise noted (e.g., "# contigs (>= 0 bp)" and "Total length (>= 0 bp)" include all contigs). Suggestion: assembly jelly.out contains continuous fragments of N's of length >= 10 bp. You may consider rerunning QUAST using --scaffolds (-s) option! Assembly jelly.out # contigs (>= 0 bp) 696946 # contigs (>= 1000 bp) 159429 # contigs (>= 5000 bp) 68750 # contigs (>= 10000 bp) 35320 # contigs (>= 25000 bp) 7048 # contigs (>= 50000 bp) 894 Total length (>= 0 bp) 1253001795 Total length (>= 1000 bp) 1140787867 Total length (>= 5000 bp) 932263178 Total length (>= 10000 bp) 691523275 Total length (>= 25000 bp) 261425921 Total length (>= 50000 bp) 57741906 # contigs 213264 Largest contig 194507 Total length 1180563613 GC (%) 36.57 N50 12433 N75 5983 L50 26241 L75 60202 # N's per 100 kbp 6580.58