owl/nightingales/C_bairdi High-throughput sequencing data for Tanner crab (Chionoecetes bairdi). --- Facility: Roberts Lab Sequencing: Single-end Read length: N/A Molecule: DNA Sequencer: MinION Date Received: 20200311 Notebook: https://robertslab.github.io/sams-notebook/2020/03/11/NanoPore-Sequencing-C.bairdi-gDNA-6129_403_26.html Genomic DNA of RNAlater-preserved, Hematodinium-infected hemolymph. Files consist of raw Fast5 files (These have NOT been basecalled.) and corresponding FastQ files. Notebook for Fast5 to FastQ conversion: https://robertslab.github.io/sams-notebook/2020/09/04/Data-Wrangling-NanoPore-Fast5-Conversion-to-FastQ-of-C.bairdi-6129_403_26-on-Mox-with-GPU-Node.html FAL86873_fdf29eaa_0.fast5 FAL86873_fdf29eaa_1.fast5 FAL86873_fdf29eaa_2.fast5 FAL86873_fdf29eaa_3.fast5 FAL86873_fdf29eaa_4.fast5 FAL86873_fdf29eaa_5.fast5 FAL86873_fdf29eaa_6.fast5 FAL86873_fdf29eaa_7.fast5 FAL86873_fdf29eaa_8.fast5 FAL86873_fdf29eaa_9.fast5 FAL86873_fdf29eaa_10.fast5 FAL86873_fdf29eaa_11.fast5 FAL86873_fdf29eaa_12.fast5 FAL86873_fdf29eaa_13.fast5 FAL86873_fdf29eaa_14.fast5 FAL86873_fdf29eaa_15.fast5 FAL86873_fdf29eaa_16.fast5 FAL86873_fdf29eaa_17.fast5 FAL86873_fdf29eaa_18.fast5 FAL86873_fdf29eaa_19.fast5 FAL86873_fdf29eaa_20.fast5 FAL86873_fdf29eaa_21.fast5 FAL86873_fdf29eaa_22.fast5 FAL86873_fdf29eaa_23.fast5 FAL86873_fdf29eaa_24.fast5 FAL86873_fdf29eaa_25.fast5 FAL86873_fdf29eaa_26.fast5 FAL86873_fdf29eaa_27.fast5 FAL86873_fdf29eaa_28.fast5 FAL86873_fdf29eaa_29.fast5 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fastq_runid_fdf29eaa281cd82e7d56bc6d018f181c1b354fc5_125_0.fastq fastq_runid_fdf29eaa281cd82e7d56bc6d018f181c1b354fc5_126_0.fastq --- Facility: Roberts Lab Sequencing: Single-end Read length: N/A Molecule: DNA Sequencer: MinION Date Received: 20200111 Notebook: https://robertslab.github.io/sams-notebook/2020/01/09/NanoPore-Sequencing-C.bairdi-gDNA-Sample-20102558-2729.html Genomic DNA of EtOH-preserved, uninfected muscle tissue. Files consist of raw Fast5 files (These have NOT been basecalled.) and corresponding FastQ files. Notebooks for Fast5 to FastQ conversion: https://robertslab.github.io/sams-notebook/2020/09/04/Data-Wrangling-NanoPore-Fast5-Conversion-to-FastQ-of-C.bairdi-20102558-2729-Run-01-on-Mox-with-GPU-Node.html https://robertslab.github.io/sams-notebook/2020/09/04/Data-Wrangling-NanoPore-Fast5-Conversion-to-FastQ-of-C.bairdi-20102558-2729-Run-02-on-Mox-with-GPU-Node.html FAL58500_04bb4d86_0.fast5 FAL58500_04bb4d86_1.fast5 FAL58500_04bb4d86_2.fast5 FAL58500_04bb4d86_3.fast5 FAL58500_04bb4d86_4.fast5 FAL58500_04bb4d86_5.fast5 FAL58500_94244ffd_0.fast5 FAL58500_94244ffd_1.fast5 FAL58500_94244ffd_2.fast5 FAL58500_94244ffd_3.fast5 FAL58500_94244ffd_4.fast5 FAL58500_94244ffd_5.fast5 FAL58500_94244ffd_6.fast5 FAL58500_94244ffd_7.fast5 FAL58500_94244ffd_8.fast5 FAL58500_94244ffd_9.fast5 FAL58500_94244ffd_10.fast5 FAL58500_94244ffd_11.fast5 FAL58500_94244ffd_12.fast5 FAL58500_94244ffd_13.fast5 FAL58500_94244ffd_14.fast5 FAL58500_94244ffd_15.fast5 FAL58500_94244ffd_16.fast5 FAL58500_94244ffd_17.fast5 FAL58500_94244ffd_18.fast5 FAL58500_94244ffd_19.fast5 fastq_runid_94244ffd7d0a9b047dd4a5fd1c2154abef8c9a8c_0_0.fastq fastq_runid_94244ffd7d0a9b047dd4a5fd1c2154abef8c9a8c_1_0.fastq fastq_runid_94244ffd7d0a9b047dd4a5fd1c2154abef8c9a8c_2_0.fastq fastq_runid_94244ffd7d0a9b047dd4a5fd1c2154abef8c9a8c_3_0.fastq fastq_runid_94244ffd7d0a9b047dd4a5fd1c2154abef8c9a8c_4_0.fastq fastq_runid_94244ffd7d0a9b047dd4a5fd1c2154abef8c9a8c_5_0.fastq fastq_runid_94244ffd7d0a9b047dd4a5fd1c2154abef8c9a8c_6_0.fastq fastq_runid_94244ffd7d0a9b047dd4a5fd1c2154abef8c9a8c_7_0.fastq fastq_runid_94244ffd7d0a9b047dd4a5fd1c2154abef8c9a8c_8_0.fastq fastq_runid_94244ffd7d0a9b047dd4a5fd1c2154abef8c9a8c_9_0.fastq fastq_runid_94244ffd7d0a9b047dd4a5fd1c2154abef8c9a8c_10_0.fastq fastq_runid_94244ffd7d0a9b047dd4a5fd1c2154abef8c9a8c_11_0.fastq fastq_runid_94244ffd7d0a9b047dd4a5fd1c2154abef8c9a8c_12_0.fastq fastq_runid_94244ffd7d0a9b047dd4a5fd1c2154abef8c9a8c_13_0.fastq fastq_runid_94244ffd7d0a9b047dd4a5fd1c2154abef8c9a8c_14_0.fastq fastq_runid_94244ffd7d0a9b047dd4a5fd1c2154abef8c9a8c_15_0.fastq fastq_runid_94244ffd7d0a9b047dd4a5fd1c2154abef8c9a8c_16_0.fastq fastq_runid_94244ffd7d0a9b047dd4a5fd1c2154abef8c9a8c_17_0.fastq fastq_runid_94244ffd7d0a9b047dd4a5fd1c2154abef8c9a8c_18_0.fastq fastq_runid_94244ffd7d0a9b047dd4a5fd1c2154abef8c9a8c_19_0.fastq --- Facility: Northwest Genomics Center (UW) Sequencing: Paired-end Read length: 100bp Molecule: RNA Sequencer: NovaSeq Date Received: 20181015 304428_S1_L001_R1_001.fastq.gz 304428_S1_L001_R2_001.fastq.gz 304428_S1_L002_R1_001.fastq.gz 304428_S1_L002_R2_001.fastq.gz --- Facility: Northwest Genomics Center (UW) Sequencing: Paired-end Read lenght: 100bp Molecule: RNA Sequencer: NovaSeq Date Received: 20191024 Notebook: https://robertslab.github.io/sams-notebook/2019/10/24/Data-Received-C.bairdi-RNAseq-Day9-12-26-Infected-Uninfected.html Pool RNA to compare Day 12/26 and infected/uninfected status. 329774_S1_L001_R1_001.fastq.gz 329774_S1_L001_R2_001.fastq.gz 329774_S1_L002_R1_001.fastq.gz 329774_S1_L002_R2_001.fastq.gz 329775_S2_L001_R1_001.fastq.gz 329775_S2_L001_R2_001.fastq.gz 329775_S2_L002_R1_001.fastq.gz 329775_S2_L002_R2_001.fastq.gz 329776_S3_L001_R1_001.fastq.gz 329776_S3_L001_R2_001.fastq.gz 329776_S3_L002_R1_001.fastq.gz 329776_S3_L002_R2_001.fastq.gz 329777_S4_L001_R1_001.fastq.gz 329777_S4_L001_R2_001.fastq.gz 329777_S4_L002_R1_001.fastq.gz 329777_S4_L002_R2_001.fastq.gz ID Sample Pool 329774 D12_infected 329775 D12_uninfected 329776 D26_infected 329777 D26_uninfected --- Facility: Genewiz Sequencing: Paired-end Read lenght: 150bp Molecule: RNA Sequencer: HiSeq4000 Date Received: 202020318 Notebook: https://robertslab.github.io/sams-notebook/2020/03/18/Data-Received-C.bairdi-RNAseq-Data-from-Genewiz.html Set of samples to compare day, temp, and infection statuses Sample_ID Day_infection-status_temp 113 D9_uninfected_cold 118 D9_infected_ambient 127 D9_infected_warm 132 D9_infected_ambient 151 D9_infected_cold 173 D9_infected_warm 178 D9_infected_ambient 221 D12_uninfected_cold 222 D12_uninfected_cold 254 D12_infected_cold 272 D12_infected_warm 280 D12_infected_warm 294 D12_infected_warm 334 D12_infected_ambient 349 D12_infected_ambient 359 D12_infected_ambient 425 D26_uninfected_cold 427 D26_uninfected_cold 445 D26_infected_cold 463 D26_infected_ambient 481 D26_infected_ambient 485 D26_infected_ambient 72 D9_infected_warm 73 D9_uninfected_cold ---