nightingales/E5-coral-deep-dive-expression/genohub2216545 Whole genome bisulfite sequencing data. Part of https://github.com/urol-e5/deep-dive-expression | Number | Species | Timepoint | Collection Date | Site | colony_id | Extraction Date | Extraction notebook post | DNA (ng/uL) | Volume eluted | Total DNA (ng) | Primer | Date Prepped | Library concentration (ng/uL) | bp peak | Library volume (uL) | Prep notebook post | Notes | |--------|--------------------------|-----------|-----------------|-------|-----------|-----------------|------------------------------------------------------------------------------------------------------------------------------|-------------|---------------|----------------|--------|--------------|-------------------------------|---------|---------------------|-------------------------------------------------------------------------------------------------------------------------------|-----------------------------------------------------------------------------------------------------------------------------------------------------------------| | 403 | Pocillopora tuahiniensis | TP2 | 20200305 | Site1 | POC-48 | 20211129 | https://github.com/Kterpis/Putnam_Lab_Notebook/blob/master/_posts/2021-11-29-20211129-RNA-DNA-extractions-from-E5-project.md | 29.1 | 90 | 2619 | 25 | 20240613 | 8.67 | 253 | 14 | https://github.com/JillAshey/JillAshey_Putnam_Lab_Notebook/blob/master/_posts/2024-06-13-Zymo-Pico-Methyl-Seq-Library-Prep.md | Labeled as POC-55 in KXT extraction post | | 413 | Acropora pulchra | TP2 | 20200305 | Site1 | ACR-178 | 20210902 | https://github.com/Kterpis/Putnam_Lab_Notebook/blob/master/_posts/2021-09-02-20210902-RNA-DNA-extractions-from-E5-project.md | 19.9 | 90 | 1791 | 26 | 20240613 | 9.64 | 269 | 14 | https://github.com/JillAshey/JillAshey_Putnam_Lab_Notebook/blob/master/_posts/2024-06-13-Zymo-Pico-Methyl-Seq-Library-Prep.md | | | 417 | Pocillopora tuahiniensis | TP2 | 20200305 | Site1 | POC-57 | 20211020 | https://kterpis.github.io/Putnam_Lab_Notebook/20211020-RNA-DNA-extractions-from-E5-project/ | 51.4 | 90 | 4626 | 27 | 20240613 | 9.3 | 256 | 14 | https://github.com/JillAshey/JillAshey_Putnam_Lab_Notebook/blob/master/_posts/2024-06-13-Zymo-Pico-Methyl-Seq-Library-Prep.md | Labeled as POC-238 in KXT extraction post | | 423 | Acropora pulchra | TP2 | 20200305 | Site1 | ACR-150 | 20210903 | https://github.com/Kterpis/Putnam_Lab_Notebook/blob/master/_posts/2021-09-03-20210903-RNA-DNA-extractions-from-E5-project.md | 17.7 | 90 | 1593 | 29 | 20240613 | 8.61 | 267 | 14 | https://github.com/JillAshey/JillAshey_Putnam_Lab_Notebook/blob/master/_posts/2024-06-13-Zymo-Pico-Methyl-Seq-Library-Prep.md | Labeled as POR-75 in KXT extraction post | | 427 | Acropora pulchra | TP2 | 20200305 | Site1 | ACR-145 | 20211012 | https://kterpis.github.io/Putnam_Lab_Notebook/20211012-RNA-DNA-extractions-from-E5-project/ | 19.6 | 90 | 1764 | 30 | 20240613 | 8.82 | 271 | 14 | https://github.com/JillAshey/JillAshey_Putnam_Lab_Notebook/blob/master/_posts/2024-06-13-Zymo-Pico-Methyl-Seq-Library-Prep.md | | | 439 | Acropora pulchra | TP2 | 20200305 | Site1 | ACR-173 | 20211102 | https://kterpis.github.io/Putnam_Lab_Notebook/20211102-RNA-DNA-extractions-from-E5-project/ | 19.9 | 90 | 1791 | 31 | 20240613 | 11.9 | 264 | 14 | https://github.com/JillAshey/JillAshey_Putnam_Lab_Notebook/blob/master/_posts/2024-06-13-Zymo-Pico-Methyl-Seq-Library-Prep.md | | | 467 | Acropora pulchra | TP2 | 20200305 | Site1 | ACR-140 | 20210921 | https://github.com/Kterpis/Putnam_Lab_Notebook/blob/master/_posts/2021-09-21-20210921-RNA-DNA-extractions-from-E5-project.md | 21.9 | 90 | 1971 | 32 | 20240613 | 16 | 270 | 14 | https://github.com/JillAshey/JillAshey_Putnam_Lab_Notebook/blob/master/_posts/2024-06-13-Zymo-Pico-Methyl-Seq-Library-Prep.md | DNA 1 and 2 Qubit readings are 27.6 and 27.4 but average is reported as 4.79 on github and on master sample sheet; JA re-qubited on 20240229 and got 21.9 ul/ng | | 471 | Porites evermanni | TP2 | 20200305 | Site1 | POR-76 | 20211015 | https://kterpis.github.io/Putnam_Lab_Notebook/20211015-RNA-DNA-extractions-from-E5-project/ | 2.7 | 90 | 243 | 33 | 20240613 | 5.25 | 245 | 14 | https://github.com/JillAshey/JillAshey_Putnam_Lab_Notebook/blob/master/_posts/2024-06-13-Zymo-Pico-Methyl-Seq-Library-Prep.md | | | 491 | Porites evermanni | TP2 | 20200305 | Site1 | POR-73 | 20211101 | https://kterpis.github.io/Putnam_Lab_Notebook/20211101-RNA-DNA-extractions-from-E5-project/ | 2.11 | 90 | 189.9 | 36 | 20240613 | 4.65 | 315 | 14 | https://github.com/JillAshey/JillAshey_Putnam_Lab_Notebook/blob/master/_posts/2024-06-13-Zymo-Pico-Methyl-Seq-Library-Prep.md | | | 385 | Pocillopora tuahiniensis | TP2 | 20200305 | Site1 | POC-47 | 20211012 | https://kterpis.github.io/Putnam_Lab_Notebook/20211012-RNA-DNA-extractions-from-E5-project/ | 25.5 | 90 | 2295 | 22 | 20241015 | 4.95 | 1477 | 14 | https://github.com/JillAshey/JillAshey_Putnam_Lab_Notebook/blob/master/_posts/2024-10-15-Zymo-Pico-Methyl-Seq-Library-Prep.md | | | 393 | Pocillopora tuahiniensis | TP2 | 20200305 | Site1 | POC-50 | 20210903 | https://github.com/Kterpis/Putnam_Lab_Notebook/blob/master/_posts/2021-09-03-20210903-RNA-DNA-extractions-from-E5-project.md | 29.4 | 90 | 2646 | 23 | 20241015 | 0.05 | 411 | 14 | https://github.com/JillAshey/JillAshey_Putnam_Lab_Notebook/blob/master/_posts/2024-10-15-Zymo-Pico-Methyl-Seq-Library-Prep.md | | | 401 | Pocillopora tuahiniensis | TP2 | 20200305 | Site1 | POC-53 | 20211118 | https://kterpis.github.io/Putnam_Lab_Notebook/20211118-RNA-DNA-extractions-from-E5-project/ | 30.8 | 90 | 2772 | 24 | 20240807 | 3.82 | 282 | 14 | https://github.com/JillAshey/JillAshey_Putnam_Lab_Notebook/blob/master/_posts/2024-08-07-Zymo-Pico-Methyl-Seq-Library-Prep.md | | | 421 | Porites evermanni | TP2 | 20200305 | Site1 | POR-82 | 20240925 | https://github.com/JillAshey/JillAshey_Putnam_Lab_Notebook/blob/master/_posts/2024-09-25-MiniprepPlus-DNA-extractions-E5.md | 0.116 | 75 | 8.7 | 28 | 20241015 | 1.96 | 485 | 14 | https://github.com/JillAshey/JillAshey_Putnam_Lab_Notebook/blob/master/_posts/2024-10-15-Zymo-Pico-Methyl-Seq-Library-Prep.md | | | 487 | Porites evermanni | TP2 | 20200305 | Site1 | POR-71 | 20211122 | https://github.com/Kterpis/Putnam_Lab_Notebook/blob/master/_posts/2021-11-22-20211122-RNA-DNA-extractions-from-E5-project.md | 0.954 | 80 | 76.32 | 34 | 20241015 | 4.26 | 496 | 14 | https://github.com/JillAshey/JillAshey_Putnam_Lab_Notebook/blob/master/_posts/2024-10-15-Zymo-Pico-Methyl-Seq-Library-Prep.md | Another large peak at 1616 | | 489 | Porites evermanni | TP2 | 20200305 | Site1 | POR-79 | 20211129 | https://github.com/Kterpis/Putnam_Lab_Notebook/blob/master/_posts/2021-11-29-20211129-RNA-DNA-extractions-from-E5-project.md | 0.804 | 80 | 64.32 | 35 | 20241015 | 3.87 | 495 | 14 | https://github.com/JillAshey/JillAshey_Putnam_Lab_Notebook/blob/master/_posts/2024-10-15-Zymo-Pico-Methyl-Seq-Library-Prep.md | Another large peak at 1447 |