FastQCFastQC Report
Tue 19 May 2026
lib_212404_sample_1703681_S101_L001_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filenamelib_212404_sample_1703681_S101_L001_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7904342
Total Bases798.3 Mbp
Sequences flagged as poor quality0
Sequence length101
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGGTGGCTACATCTCGT594510.7521309174122274TruSeq Adapter, Index 14 (97% over 37bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGGTGGCTACATCGCGT283960.3592455893229316TruSeq Adapter, Index 14 (97% over 37bp)
GCGAGACTTGCGTGATAAAAAGCTCAGAAGAAGCCCAAGAAGAAGAATAC100240.12681637510117857No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)