FastQCFastQC Report
Thu 6 Aug 2026
lib_213488_sample_1703762_S140_L002_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filenamelib_213488_sample_1703762_S140_L002_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35933524
Total Bases3.6 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTTCTTCTGTATCTCGT638830.17778106038249963TruSeq Adapter, Index 9 (97% over 37bp)
GGAAAAATGGTTTGTTTAAATAAACTCTAGTGTACTTAGGGGGTATTAAT435940.12131846573133212No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTTCTTCTGTATCGCGT383930.10684451655785278TruSeq Adapter, Index 9 (97% over 37bp)

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)