FastQCFastQC Report
Thu 6 Aug 2026
lib_213490_sample_1703778_S58_L001_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filenamelib_213490_sample_1703778_S58_L001_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23942475
Total Bases2.4 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCTCGGAACTATCTCGT1487440.621255739016121TruSeq Adapter, Index 9 (97% over 37bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCTCGGAACTATCGCGT704730.2943430033862414TruSeq Adapter, Index 9 (97% over 37bp)
GGAAAAATGGTTTGTTTAAATAAACTCTAGTGTACTTAGGGGGTATTAAT274780.11476674821629759No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)