FastQCFastQC Report
Thu 6 Aug 2026
lib_213512_sample_1703764_S142_L002_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filenamelib_213512_sample_1703764_S142_L002_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31375017
Total Bases3.1 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATAGAACACGATCTCGG1032700.3291472320158424TruSeq Adapter, Index 3 (97% over 37bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATAGAACACGATCGCGG404600.12895610542617394TruSeq Adapter, Index 3 (97% over 37bp)
GGAAAAATGGTTTGTTTAAATAAACTCTAGTGTACTTAGGGGGTATTAAT390390.12442702421483946No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)