FastQCFastQC Report
Thu 6 Aug 2026
lib_213517_sample_1703693_S6_L001_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filenamelib_213517_sample_1703693_S6_L001_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32943990
Total Bases3.3 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGAACGGCCATATCTCGT818690.24850966746893743TruSeq Adapter, Index 9 (97% over 37bp)
GGAAAAATGGTTTGTTTAAATAAACTCTAGTGTACTTAGGGGGTATTAAT420140.12753160743431502No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGAACGGCCATATCGCGT345280.10480819111467676TruSeq Adapter, Index 9 (97% over 37bp)

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)